Clone BS01412 Report

Search the DGRC for BS01412

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:14
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptRYBP-RA
Protein status:BS01412.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01412.3prime Sequence

485 bp (484 high quality bases) assembled on 2005-11-29

> BS01412.3prime
ATGGTCTAGAAAGCTTCGCTAACTCCGGCTGTCGTTGCTCTCGCTGAAGC
TCTGCTCACTGGATTCGCGTCGGCTGCTCACCGGCTTGGCCTTGTACTCT
GTGATGAACACGGTCACCGAGTTGACCGTCACCTCTCGCGTCTGTGCCGT
CGATCGGTCCACGTTTTTCAACCGTGCCGGATACCGCTTGTGCCTCTGCC
GGTCGTGCCCACTGCCATGCCGTGATCCGGAGGCGGACTTCCCGTTGGGC
ATGTTGACACTGGCTCCTGGCAAAGTGGCGGCCTGCTGGGCGACTAGCGC
TGAGTTCAGGCGTGGCTTTCGCGTGGAGGTTCCTTTCCGCACGTCGCACA
TGCGACACTTGAAGGCCTCCGCCGAGTTTCTATATGTGCAGACGCTGCAG
TCCCAGAAGTTCTCCTCGATCACCTTCGCCTGCCGCTTTTGTCGTCGCAC
CGGCGAGGATTTCTTGTCCATGTCGACTGATAACT

BS01412.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12190-PA 453 CG12190-RA 1..453 471..19 2265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
RYBP-RB 2242 CG12190-RB 521..973 471..19 2265 100 Minus
RYBP-RA 2064 CG12190-RA 343..795 471..19 2265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22671628..22671943 334..19 1580 100 Minus
2R 25286936 2R 22671107..22671246 471..332 700 100 Minus
Blast to na_te.dros performed on 2015-02-09 02:54:47 has no hits.

BS01412.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:50 Download gff for BS01412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12190-PA 1..453 19..471 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:47 Download gff for BS01412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12190-PA 1..453 19..471 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:09:52 Download gff for BS01412.3prime
Subject Subject Range Query Range Percent Splice Strand
RYBP-RA 356..818 14..477 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:19:49 Download gff for BS01412.3prime
Subject Subject Range Query Range Percent Splice Strand
RYBP-RA 338..800 14..477 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:19:49 Download gff for BS01412.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22671102..22671245 333..477 97 -> Minus
2R 22671630..22671948 14..332 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:09:52 Download gff for BS01412.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18558607..18558750 333..477 97 -> Minus
arm_2R 18559135..18559453 14..332 99   Minus

BS01412.5prime Sequence

485 bp (484 high quality bases) assembled on 2005-11-29

> BS01412.5prime
GAAGTTATCAGTCGACATGGACAAGAAATCCTCGCCGGTGCGACGACAAA
AGCGGCAGGCGAAGGTGATCGAGGAGAACTTCTGGGACTGCAGCGTCTGC
ACATATAGAAACTCGGCGGAGGCCTTCAAGTGTCGCATGTGCGACGTGCG
GAAAGGAACCTCCACGCGAAAGCCACGCCTGAACTCAGCGCTAGTCGCCC
AGCAGGCCGCCACTTTGCCAGGAGCCAGTGTCAACATGCCCAACGGGAAG
TCCGCCTCCGGATCACGGCATGGCAGTGGGCACGACCGGCAGAGGCACAA
GCGGTATCCGGCACGGTTGAAAAACGTGGACCGATCGACGGCACAGACGC
GAGAGGTGACGGTCAACTCGGTGACCGTGTTCATCACAGAGTACAAGGCC
AAGCCGGTGAGCAGCCGACGCGAATCCAGTGAGCAGAGCTTCAGCGAGAG
CAACGACAGCCGGAGTTAGCGAAGCTTTCTAGACC

BS01412.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12190-PA 453 CG12190-RA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
RYBP-RB 2242 CG12190-RB 521..973 17..469 2265 100 Plus
RYBP-RA 2064 CG12190-RA 343..795 17..469 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22671628..22671943 154..469 1580 100 Plus
2R 25286936 2R 22671107..22671246 17..156 700 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:13:35 has no hits.

BS01412.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:51 Download gff for BS01412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12190-PA 1..453 17..469 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:49 Download gff for BS01412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12190-PA 1..453 17..469 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:43:14 Download gff for BS01412.5prime
Subject Subject Range Query Range Percent Splice Strand
RYBP-RA 356..818 11..474 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:21:57 Download gff for BS01412.5prime
Subject Subject Range Query Range Percent Splice Strand
RYBP-RA 338..800 11..474 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:21:57 Download gff for BS01412.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22671102..22671245 11..155 97 -> Plus
2R 22671630..22671948 156..474 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:43:14 Download gff for BS01412.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18558607..18558750 11..155 97 -> Plus
arm_2R 18559135..18559453 156..474 99   Plus

BS01412.complete Sequence

487 bp (487 high quality bases) assembled on 2005-06-23

> BS01412.complete
GAAGTTATCAGTCGACATGGACAAGAAATCCTCGCCGGTGCGACGACAAA
AGCGGCAGGCGAAGGTGATCGAGGAGAACTTCTGGGACTGCAGCGTCTGC
ACATATAGAAACTCGGCGGAGGCCTTCAAGTGTCGCATGTGCGACGTGCG
GAAAGGAACCTCCACGCGAAAGCCACGCCTGAACTCAGCGCTAGTCGCCC
AGCAGGCCGCCACTTTGCCAGGAGCCAGTGTCAACATGCCCAACGGGAAG
TCCGCCTCCGGATCACGGCATGGCAGTGGGCACGACCGGCAGAGGCACAA
GCGGTATCCGGCACGGTTGAAAAACGTGGACCGATCGACGGCACAGACGC
GAGAGGTGACGGTCAACTCGGTGACCGTGTTCATCACAGAGTACAAGGCC
AAGCCGGTGAGCAGCCGACGCGAATCCAGTGAGCAGAGCTTCAGCGAGAG
CAACGACAGCCGGAGTTAGCGAAGCTTTCTAGACCAT

BS01412.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
RYBP-RB 453 CG12190-PB 1..453 17..469 2265 100 Plus
RYBP-RA 453 CG12190-PA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
RYBP-RB 2242 CG12190-RB 521..973 17..469 2265 100 Plus
RYBP-RA 2064 CG12190-RA 343..795 17..469 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22671628..22671943 154..469 1580 100 Plus
2R 25286936 2R 22671107..22671246 17..156 700 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:40:20 has no hits.

BS01412.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:24 Download gff for BS01412.complete
Subject Subject Range Query Range Percent Splice Strand
CG12190-RA 1..453 17..469 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:24 Download gff for BS01412.complete
Subject Subject Range Query Range Percent Splice Strand
CG12190-RA 351..813 11..474 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:18 Download gff for BS01412.complete
Subject Subject Range Query Range Percent Splice Strand
RYBP-RA 361..815 17..471 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:25 Download gff for BS01412.complete
Subject Subject Range Query Range Percent Splice Strand
CG12190-RA 351..813 11..474 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:36 Download gff for BS01412.complete
Subject Subject Range Query Range Percent Splice Strand
RYBP-RA 343..797 17..471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:36 Download gff for BS01412.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22671107..22671245 17..155 100 -> Plus
2R 22671630..22671945 156..471 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:18 Download gff for BS01412.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18558612..18558750 17..155 100 -> Plus
arm_2R 18559135..18559450 156..471 99   Plus

BS01412.pep Sequence

Translation from 16 to 468

> BS01412.pep
MDKKSSPVRRQKRQAKVIEENFWDCSVCTYRNSAEAFKCRMCDVRKGTST
RKPRLNSALVAQQAATLPGASVNMPNGKSASGSRHGSGHDRQRHKRYPAR
LKNVDRSTAQTREVTVNSVTVFITEYKAKPVSSRRESSEQSFSESNDSRS
*

BS01412.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
RYBP-PB 150 CG12190-PB 1..150 1..150 771 100 Plus
RYBP-PA 150 CG12190-PA 1..150 1..150 771 100 Plus