Clone Sequence Records
BS01412.3prime Sequence
485 bp (484 high quality bases) assembled on 2005-11-29
> BS01412.3prime
ATGGTCTAGAAAGCTTCGCTAACTCCGGCTGTCGTTGCTCTCGCTGAAGC
TCTGCTCACTGGATTCGCGTCGGCTGCTCACCGGCTTGGCCTTGTACTCT
GTGATGAACACGGTCACCGAGTTGACCGTCACCTCTCGCGTCTGTGCCGT
CGATCGGTCCACGTTTTTCAACCGTGCCGGATACCGCTTGTGCCTCTGCC
GGTCGTGCCCACTGCCATGCCGTGATCCGGAGGCGGACTTCCCGTTGGGC
ATGTTGACACTGGCTCCTGGCAAAGTGGCGGCCTGCTGGGCGACTAGCGC
TGAGTTCAGGCGTGGCTTTCGCGTGGAGGTTCCTTTCCGCACGTCGCACA
TGCGACACTTGAAGGCCTCCGCCGAGTTTCTATATGTGCAGACGCTGCAG
TCCCAGAAGTTCTCCTCGATCACCTTCGCCTGCCGCTTTTGTCGTCGCAC
CGGCGAGGATTTCTTGTCCATGTCGACTGATAACT
BS01412.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12190-PA | 453 | CG12190-RA | 1..453 | 471..19 | 2265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RYBP-RB | 2242 | CG12190-RB | 521..973 | 471..19 | 2265 | 100 | Minus |
RYBP-RA | 2064 | CG12190-RA | 343..795 | 471..19 | 2265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:54:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22671628..22671943 | 334..19 | 1580 | 100 | Minus |
2R | 25286936 | 2R | 22671107..22671246 | 471..332 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:54:47 has no hits.
BS01412.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:50 Download gff for
BS01412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12190-PA | 1..453 | 19..471 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:47 Download gff for
BS01412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12190-PA | 1..453 | 19..471 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:09:52 Download gff for
BS01412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RYBP-RA | 356..818 | 14..477 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:19:49 Download gff for
BS01412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RYBP-RA | 338..800 | 14..477 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:19:49 Download gff for
BS01412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22671102..22671245 | 333..477 | 97 | -> | Minus |
2R | 22671630..22671948 | 14..332 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:09:52 Download gff for
BS01412.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18558607..18558750 | 333..477 | 97 | -> | Minus |
arm_2R | 18559135..18559453 | 14..332 | 99 | | Minus |
BS01412.5prime Sequence
485 bp (484 high quality bases) assembled on 2005-11-29
> BS01412.5prime
GAAGTTATCAGTCGACATGGACAAGAAATCCTCGCCGGTGCGACGACAAA
AGCGGCAGGCGAAGGTGATCGAGGAGAACTTCTGGGACTGCAGCGTCTGC
ACATATAGAAACTCGGCGGAGGCCTTCAAGTGTCGCATGTGCGACGTGCG
GAAAGGAACCTCCACGCGAAAGCCACGCCTGAACTCAGCGCTAGTCGCCC
AGCAGGCCGCCACTTTGCCAGGAGCCAGTGTCAACATGCCCAACGGGAAG
TCCGCCTCCGGATCACGGCATGGCAGTGGGCACGACCGGCAGAGGCACAA
GCGGTATCCGGCACGGTTGAAAAACGTGGACCGATCGACGGCACAGACGC
GAGAGGTGACGGTCAACTCGGTGACCGTGTTCATCACAGAGTACAAGGCC
AAGCCGGTGAGCAGCCGACGCGAATCCAGTGAGCAGAGCTTCAGCGAGAG
CAACGACAGCCGGAGTTAGCGAAGCTTTCTAGACC
BS01412.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12190-PA | 453 | CG12190-RA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:13:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RYBP-RB | 2242 | CG12190-RB | 521..973 | 17..469 | 2265 | 100 | Plus |
RYBP-RA | 2064 | CG12190-RA | 343..795 | 17..469 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:13:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22671628..22671943 | 154..469 | 1580 | 100 | Plus |
2R | 25286936 | 2R | 22671107..22671246 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:13:35 has no hits.
BS01412.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:51 Download gff for
BS01412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12190-PA | 1..453 | 17..469 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:49 Download gff for
BS01412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12190-PA | 1..453 | 17..469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:43:14 Download gff for
BS01412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RYBP-RA | 356..818 | 11..474 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:21:57 Download gff for
BS01412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RYBP-RA | 338..800 | 11..474 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:21:57 Download gff for
BS01412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22671102..22671245 | 11..155 | 97 | -> | Plus |
2R | 22671630..22671948 | 156..474 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:43:14 Download gff for
BS01412.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18558607..18558750 | 11..155 | 97 | -> | Plus |
arm_2R | 18559135..18559453 | 156..474 | 99 | | Plus |
BS01412.complete Sequence
487 bp (487 high quality bases) assembled on 2005-06-23
> BS01412.complete
GAAGTTATCAGTCGACATGGACAAGAAATCCTCGCCGGTGCGACGACAAA
AGCGGCAGGCGAAGGTGATCGAGGAGAACTTCTGGGACTGCAGCGTCTGC
ACATATAGAAACTCGGCGGAGGCCTTCAAGTGTCGCATGTGCGACGTGCG
GAAAGGAACCTCCACGCGAAAGCCACGCCTGAACTCAGCGCTAGTCGCCC
AGCAGGCCGCCACTTTGCCAGGAGCCAGTGTCAACATGCCCAACGGGAAG
TCCGCCTCCGGATCACGGCATGGCAGTGGGCACGACCGGCAGAGGCACAA
GCGGTATCCGGCACGGTTGAAAAACGTGGACCGATCGACGGCACAGACGC
GAGAGGTGACGGTCAACTCGGTGACCGTGTTCATCACAGAGTACAAGGCC
AAGCCGGTGAGCAGCCGACGCGAATCCAGTGAGCAGAGCTTCAGCGAGAG
CAACGACAGCCGGAGTTAGCGAAGCTTTCTAGACCAT
BS01412.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RYBP-RB | 453 | CG12190-PB | 1..453 | 17..469 | 2265 | 100 | Plus |
RYBP-RA | 453 | CG12190-PA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:40:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RYBP-RB | 2242 | CG12190-RB | 521..973 | 17..469 | 2265 | 100 | Plus |
RYBP-RA | 2064 | CG12190-RA | 343..795 | 17..469 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22671628..22671943 | 154..469 | 1580 | 100 | Plus |
2R | 25286936 | 2R | 22671107..22671246 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:40:20 has no hits.
BS01412.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:24 Download gff for
BS01412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12190-RA | 1..453 | 17..469 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:24 Download gff for
BS01412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12190-RA | 351..813 | 11..474 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:18 Download gff for
BS01412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RYBP-RA | 361..815 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:25 Download gff for
BS01412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12190-RA | 351..813 | 11..474 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:36 Download gff for
BS01412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RYBP-RA | 343..797 | 17..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:36 Download gff for
BS01412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22671107..22671245 | 17..155 | 100 | -> | Plus |
2R | 22671630..22671945 | 156..471 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:18 Download gff for
BS01412.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18558612..18558750 | 17..155 | 100 | -> | Plus |
arm_2R | 18559135..18559450 | 156..471 | 99 | | Plus |
BS01412.pep Sequence
Translation from 16 to 468
> BS01412.pep
MDKKSSPVRRQKRQAKVIEENFWDCSVCTYRNSAEAFKCRMCDVRKGTST
RKPRLNSALVAQQAATLPGASVNMPNGKSASGSRHGSGHDRQRHKRYPAR
LKNVDRSTAQTREVTVNSVTVFITEYKAKPVSSRRESSEQSFSESNDSRS
*
BS01412.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RYBP-PB | 150 | CG12190-PB | 1..150 | 1..150 | 771 | 100 | Plus |
RYBP-PA | 150 | CG12190-PA | 1..150 | 1..150 | 771 | 100 | Plus |