Clone BS01416 Report

Search the DGRC for BS01416

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:14
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptTaf10-RA
Protein status:BS01416.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01416.3prime Sequence

536 bp (535 high quality bases) assembled on 2005-11-29

> BS01416.3prime
ATGGTCTAGAAAGCTTCGCTAAACGAAATACTGCGGCTTGCGCATGGTGA
TGCCGTGGTCCGCGAGTGCCGGCACCAGGTCCTCCATGGCCAGCGTGTAC
TTCCTGTCCTTGGGGTTTTTCTTGTCCTTGCTGGAACTGTGTCCGCTGGA
ATGCTGGATGTTCGTGGTGCGCGTCTTGCAGTGCTGCAGTGCGTCGTTGG
CAATATCCGAGATGAACTTCTGCGCGGACACCGAGACGAGGCGCACTATC
TTGGGGTCCACTGTGCAGAAGCCAGCCGTTTTCAAGATGTGCATGGTGAG
GGCGTCTGGTATGGTGGGCGAGTAGTCCTCCAGCTGCTTTATCAGCTCAT
CCATCTCCGATTCCTCCGTCGTCAGAGGAACCTCCTCCACGTCCGGTTGC
TCCTCGTCGGAATGCAGTTCGGACTGCATTAGTGGCGAGTCTATATCCTC
CTCCTCGGTGTCCGTGGCCGATGTTACGGATTCTGCGGGTGTAACACTGA
TGTCCTCGCCATCGGAAGCCATGTCGACTGATAACT

BS01416.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2859-PA 504 Taf10-RA 1..504 522..19 2520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
Taf10-RA 664 CG2859-RA 92..595 522..19 2520 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2768285..2768543 277..19 1295 100 Minus
2L 23513712 2L 2767981..2768227 522..276 1235 100 Minus
Blast to na_te.dros performed 2015-02-10 20:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 4126..4175 442..393 106 68 Minus

BS01416.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:52 Download gff for BS01416.3prime
Subject Subject Range Query Range Percent Splice Strand
Taf10-PA 1..504 19..522 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:50 Download gff for BS01416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2859-PA 1..504 19..522 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:35:57 Download gff for BS01416.3prime
Subject Subject Range Query Range Percent Splice Strand
Taf10-RA 92..595 19..522 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:25:29 Download gff for BS01416.3prime
Subject Subject Range Query Range Percent Splice Strand
Taf10-RA 92..595 19..522 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:25:29 Download gff for BS01416.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2767981..2768226 277..522 100 -> Minus
2L 2768286..2768543 19..276 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:35:57 Download gff for BS01416.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2767981..2768226 277..522 100 -> Minus
arm_2L 2768286..2768543 19..276 100   Minus

BS01416.5prime Sequence

536 bp (535 high quality bases) assembled on 2005-11-29

> BS01416.5prime
GAAGTTATCAGTCGACATGGCTTCCGATGGCGAGGACATCAGTGTTACAC
CCGCAGAATCCGTAACATCGGCCACGGACACCGAGGAGGAGGATATAGAC
TCGCCACTAATGCAGTCCGAACTGCATTCCGACGAGGAGCAACCGGACGT
GGAGGAGGTTCCTCTGACGACGGAGGAATCGGAGATGGATGAGCTGATAA
AGCAGCTGGAGGACTACTCGCCCACCATACCAGACGCCCTCACCATGCAC
ATCTTGAAAACGGCTGGCTTCTGCACAGTGGACCCCAAGATAGTGCGCCT
CGTCTCGGTGTCCGCGCAGAAGTTCATCTCGGATATTGCCAACGACGCAC
TGCAGCACTGCAAGACGCGCACCACGAACATCCAGCATTCCAGCGGACAC
AGTTCCAGCAAGGACAAGAAAAACCCCAAGGACAGGAAGTACACGCTGGC
CATGGAGGACCTGGTGCCGGCACTCGCGGACCACGGCATCACCATGCGCA
AGCCGCAGTATTTCGTTTAGCGAAGCTTTCTAGACC

BS01416.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG2859-PA 504 Taf10-RA 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
Taf10-RA 664 CG2859-RA 92..595 17..520 2520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2768285..2768543 262..520 1295 100 Plus
2L 23513712 2L 2767981..2768227 17..263 1235 100 Plus
Blast to na_te.dros performed 2015-02-04 10:35:19
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 4126..4175 97..146 106 68 Plus

BS01416.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:53 Download gff for BS01416.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf10-PA 1..504 17..520 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:51 Download gff for BS01416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2859-PA 1..504 17..520 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:26:58 Download gff for BS01416.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf10-RA 92..595 17..520 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:38:10 Download gff for BS01416.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf10-RA 92..595 17..520 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:38:10 Download gff for BS01416.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2767981..2768226 17..262 100 -> Plus
2L 2768286..2768543 263..520 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:26:58 Download gff for BS01416.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2767981..2768226 17..262 100 -> Plus
arm_2L 2768286..2768543 263..520 100   Plus

BS01416.complete Sequence

538 bp (538 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634607

> BS01416.complete
GAAGTTATCAGTCGACATGGCTTCCGATGGCGAGGACATCAGTGTTACAC
CCGCAGAATCCGTAACATCGGCCACGGACACCGAGGAGGAGGATATAGAC
TCGCCACTAATGCAGTCCGAACTGCATTCCGACGAGGAGCAACCGGACGT
GGAGGAGGTTCCTCTGACGACGGAGGAATCGGAGATGGATGAGCTGATAA
AGCAGCTGGAGGACTACTCGCCCACCATACCAGACGCCCTCACCATGCAC
ATCTTGAAAACGGCTGGCTTCTGCACAGTGGACCCCAAGATAGTGCGCCT
CGTCTCGGTGTCCGCGCAGAAGTTCATCTCGGATATTGCCAACGACGCAC
TGCAGCACTGCAAGACGCGCACCACGAACATCCAGCATTCCAGCGGACAC
AGTTCCAGCAAGGACAAGAAAAACCCCAAGGACAGGAAGTACACGCTGGC
CATGGAGGACCTGGTGCCGGCACTCGCGGACCACGGCATCACCATGCGCA
AGCCGCAGTATTTCGTTTAGCGAAGCTTTCTAGACCAT

BS01416.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
Taf10-RA 504 CG2859-PA 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
Taf10-RA 664 CG2859-RA 92..595 17..520 2520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2768285..2768543 262..520 1295 100 Plus
2L 23513712 2L 2767981..2768227 17..263 1235 100 Plus
Blast to na_te.dros performed 2014-11-27 15:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 4126..4175 97..146 106 68 Plus

BS01416.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:26 Download gff for BS01416.complete
Subject Subject Range Query Range Percent Splice Strand
Taf10-RA 1..504 17..520 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:26 Download gff for BS01416.complete
Subject Subject Range Query Range Percent Splice Strand
Taf10-RA 70..573 17..520 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:42 Download gff for BS01416.complete
Subject Subject Range Query Range Percent Splice Strand
Taf10-RA 92..595 17..522 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:26 Download gff for BS01416.complete
Subject Subject Range Query Range Percent Splice Strand
Taf10-RA 70..573 17..520 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:53 Download gff for BS01416.complete
Subject Subject Range Query Range Percent Splice Strand
Taf10-RA 92..595 17..522 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:53 Download gff for BS01416.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2767981..2768226 17..262 100 -> Plus
2L 2768286..2768543 263..522 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:42 Download gff for BS01416.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2767981..2768226 17..262 100 -> Plus
arm_2L 2768286..2768543 263..522 99   Plus

BS01416.pep Sequence

Translation from 16 to 519

> BS01416.pep
MASDGEDISVTPAESVTSATDTEEEDIDSPLMQSELHSDEEQPDVEEVPL
TTEESEMDELIKQLEDYSPTIPDALTMHILKTAGFCTVDPKIVRLVSVSA
QKFISDIANDALQHCKTRTTNIQHSSGHSSSKDKKNPKDRKYTLAMEDLV
PALADHGITMRKPQYFV*

BS01416.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Taf10-PA 167 CG2859-PA 1..167 1..167 854 100 Plus
Taf10b-PA 146 CG3069-PA 35..144 51..165 289 53 Plus