Clone Sequence Records
BS01416.3prime Sequence
536 bp (535 high quality bases) assembled on 2005-11-29
> BS01416.3prime
ATGGTCTAGAAAGCTTCGCTAAACGAAATACTGCGGCTTGCGCATGGTGA
TGCCGTGGTCCGCGAGTGCCGGCACCAGGTCCTCCATGGCCAGCGTGTAC
TTCCTGTCCTTGGGGTTTTTCTTGTCCTTGCTGGAACTGTGTCCGCTGGA
ATGCTGGATGTTCGTGGTGCGCGTCTTGCAGTGCTGCAGTGCGTCGTTGG
CAATATCCGAGATGAACTTCTGCGCGGACACCGAGACGAGGCGCACTATC
TTGGGGTCCACTGTGCAGAAGCCAGCCGTTTTCAAGATGTGCATGGTGAG
GGCGTCTGGTATGGTGGGCGAGTAGTCCTCCAGCTGCTTTATCAGCTCAT
CCATCTCCGATTCCTCCGTCGTCAGAGGAACCTCCTCCACGTCCGGTTGC
TCCTCGTCGGAATGCAGTTCGGACTGCATTAGTGGCGAGTCTATATCCTC
CTCCTCGGTGTCCGTGGCCGATGTTACGGATTCTGCGGGTGTAACACTGA
TGTCCTCGCCATCGGAAGCCATGTCGACTGATAACT
BS01416.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2859-PA | 504 | Taf10-RA | 1..504 | 522..19 | 2520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf10-RA | 664 | CG2859-RA | 92..595 | 522..19 | 2520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2768285..2768543 | 277..19 | 1295 | 100 | Minus |
2L | 23513712 | 2L | 2767981..2768227 | 522..276 | 1235 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 20:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader3 | 5484 | invader3 INVADER3 5484bp | 4126..4175 | 442..393 | 106 | 68 | Minus |
BS01416.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:52 Download gff for
BS01416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-PA | 1..504 | 19..522 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:50 Download gff for
BS01416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2859-PA | 1..504 | 19..522 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:35:57 Download gff for
BS01416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-RA | 92..595 | 19..522 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:25:29 Download gff for
BS01416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-RA | 92..595 | 19..522 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:25:29 Download gff for
BS01416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2767981..2768226 | 277..522 | 100 | -> | Minus |
2L | 2768286..2768543 | 19..276 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:35:57 Download gff for
BS01416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2767981..2768226 | 277..522 | 100 | -> | Minus |
arm_2L | 2768286..2768543 | 19..276 | 100 | | Minus |
BS01416.5prime Sequence
536 bp (535 high quality bases) assembled on 2005-11-29
> BS01416.5prime
GAAGTTATCAGTCGACATGGCTTCCGATGGCGAGGACATCAGTGTTACAC
CCGCAGAATCCGTAACATCGGCCACGGACACCGAGGAGGAGGATATAGAC
TCGCCACTAATGCAGTCCGAACTGCATTCCGACGAGGAGCAACCGGACGT
GGAGGAGGTTCCTCTGACGACGGAGGAATCGGAGATGGATGAGCTGATAA
AGCAGCTGGAGGACTACTCGCCCACCATACCAGACGCCCTCACCATGCAC
ATCTTGAAAACGGCTGGCTTCTGCACAGTGGACCCCAAGATAGTGCGCCT
CGTCTCGGTGTCCGCGCAGAAGTTCATCTCGGATATTGCCAACGACGCAC
TGCAGCACTGCAAGACGCGCACCACGAACATCCAGCATTCCAGCGGACAC
AGTTCCAGCAAGGACAAGAAAAACCCCAAGGACAGGAAGTACACGCTGGC
CATGGAGGACCTGGTGCCGGCACTCGCGGACCACGGCATCACCATGCGCA
AGCCGCAGTATTTCGTTTAGCGAAGCTTTCTAGACC
BS01416.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2859-PA | 504 | Taf10-RA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf10-RA | 664 | CG2859-RA | 92..595 | 17..520 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2768285..2768543 | 262..520 | 1295 | 100 | Plus |
2L | 23513712 | 2L | 2767981..2768227 | 17..263 | 1235 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 10:35:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader3 | 5484 | invader3 INVADER3 5484bp | 4126..4175 | 97..146 | 106 | 68 | Plus |
BS01416.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:53 Download gff for
BS01416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-PA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:51 Download gff for
BS01416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2859-PA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:26:58 Download gff for
BS01416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-RA | 92..595 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:38:10 Download gff for
BS01416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-RA | 92..595 | 17..520 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:38:10 Download gff for
BS01416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2767981..2768226 | 17..262 | 100 | -> | Plus |
2L | 2768286..2768543 | 263..520 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:26:58 Download gff for
BS01416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2767981..2768226 | 17..262 | 100 | -> | Plus |
arm_2L | 2768286..2768543 | 263..520 | 100 | | Plus |
BS01416.complete Sequence
538 bp (538 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634607
> BS01416.complete
GAAGTTATCAGTCGACATGGCTTCCGATGGCGAGGACATCAGTGTTACAC
CCGCAGAATCCGTAACATCGGCCACGGACACCGAGGAGGAGGATATAGAC
TCGCCACTAATGCAGTCCGAACTGCATTCCGACGAGGAGCAACCGGACGT
GGAGGAGGTTCCTCTGACGACGGAGGAATCGGAGATGGATGAGCTGATAA
AGCAGCTGGAGGACTACTCGCCCACCATACCAGACGCCCTCACCATGCAC
ATCTTGAAAACGGCTGGCTTCTGCACAGTGGACCCCAAGATAGTGCGCCT
CGTCTCGGTGTCCGCGCAGAAGTTCATCTCGGATATTGCCAACGACGCAC
TGCAGCACTGCAAGACGCGCACCACGAACATCCAGCATTCCAGCGGACAC
AGTTCCAGCAAGGACAAGAAAAACCCCAAGGACAGGAAGTACACGCTGGC
CATGGAGGACCTGGTGCCGGCACTCGCGGACCACGGCATCACCATGCGCA
AGCCGCAGTATTTCGTTTAGCGAAGCTTTCTAGACCAT
BS01416.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:18:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf10-RA | 504 | CG2859-PA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf10-RA | 664 | CG2859-RA | 92..595 | 17..520 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2768285..2768543 | 262..520 | 1295 | 100 | Plus |
2L | 23513712 | 2L | 2767981..2768227 | 17..263 | 1235 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:18:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader3 | 5484 | invader3 INVADER3 5484bp | 4126..4175 | 97..146 | 106 | 68 | Plus |
BS01416.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:26 Download gff for
BS01416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-RA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:26 Download gff for
BS01416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-RA | 70..573 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:42 Download gff for
BS01416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-RA | 92..595 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:26 Download gff for
BS01416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-RA | 70..573 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:53 Download gff for
BS01416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Taf10-RA | 92..595 | 17..522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:53 Download gff for
BS01416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2767981..2768226 | 17..262 | 100 | -> | Plus |
2L | 2768286..2768543 | 263..522 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:42 Download gff for
BS01416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2767981..2768226 | 17..262 | 100 | -> | Plus |
arm_2L | 2768286..2768543 | 263..522 | 99 | | Plus |
BS01416.pep Sequence
Translation from 16 to 519
> BS01416.pep
MASDGEDISVTPAESVTSATDTEEEDIDSPLMQSELHSDEEQPDVEEVPL
TTEESEMDELIKQLEDYSPTIPDALTMHILKTAGFCTVDPKIVRLVSVSA
QKFISDIANDALQHCKTRTTNIQHSSGHSSSKDKKNPKDRKYTLAMEDLV
PALADHGITMRKPQYFV*
BS01416.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Taf10-PA | 167 | CG2859-PA | 1..167 | 1..167 | 854 | 100 | Plus |
Taf10b-PA | 146 | CG3069-PA | 35..144 | 51..165 | 289 | 53 | Plus |