Clone BS01423 Report

Search the DGRC for BS01423

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:14
Well:23
Vector:pDNR-Dual
Associated Gene/Transcriptemc-RA
Protein status:BS01423.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01423.3prime Sequence

632 bp (631 high quality bases) assembled on 2005-11-29

> BS01423.3prime
ATGGTCTAGAAAGCTTCGTTACGACTGTCTGCTGTCTTTCTCCGCATTCT
GTGGCGTTGCTAAACTGTTGGACAGTTGCTGCTGTGATTGCAGTTGTTGC
TGCTGCAGTTGCAGTTGCTGCTGCTGCTGATGCTGCTGCGGATGGGCGGG
CGCCACAAGAGTGTTGGGCGTTTGGCGATCGGTAAGCGGGAGACGGGCGG
CGGGACTAGAGACTTTCGCCGGCTGCTCGGCATTCAGGCGCTGGGCGAGG
ATATCTGGATCGACTTCCGCTTCTGCCTCGGCATCCGCATCCTCCATGTC
GCTGTCCTCGTCCTCGTGGAGTCCGTTCACCGCCGTCAGAGCGGCTGCCG
CATCGAAGTTGCCCATCTCGGGGTGCGTCTCCAGCTCGGTCTGCAGGTCG
CAGATGTAGTCGATGACGTGCTGGATGATCTCCAGCTTGGTGAGCTTCCT
GTTCTTGGGCATGAACGGAACGAGGTCCTTCAGTTTGGACAGATACATCT
TCATCTCGGCGTTCTCCCCGTCGCCGCGGTGCGTGGGATGGCGCTGGATG
CGCCCGCTGGCATTCAAGGCCGGCATTCCGGAGGCACCTGTCTGGCAGAC
GGCCGTCAGGGACTTCATGTCGACTGATAACT

BS01423.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1007-PA 600 emc-RA 1..600 618..19 3000 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
emc-RA 2049 CG1007-RA 265..864 618..19 3000 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 749664..750227 618..55 2820 100 Minus
3L 28110227 3L 752271..752307 55..19 185 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:47:46 has no hits.

BS01423.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:54 Download gff for BS01423.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1007-PA 1..600 19..618 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:53 Download gff for BS01423.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1007-PA 1..600 19..618 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:29:42 Download gff for BS01423.3prime
Subject Subject Range Query Range Percent Splice Strand
emc-RA 261..864 19..626 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:30 Download gff for BS01423.3prime
Subject Subject Range Query Range Percent Splice Strand
emc-RA 261..864 19..626 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:30 Download gff for BS01423.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 752272..752307 19..54 100   Minus
3L 749660..750227 55..626 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:29:42 Download gff for BS01423.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 749660..750227 55..626 99 -> Minus
arm_3L 752272..752307 19..54 100   Minus

BS01423.5prime Sequence

632 bp (631 high quality bases) assembled on 2005-11-29

> BS01423.5prime
GAAGTTATCAGTCGACATGAAGTCCCTGACGGCCGTCTGCCAGACAGGTG
CCTCCGGAATGCCGGCCTTGAATGCCAGCGGGCGCATCCAGCGCCATCCC
ACGCACCGCGGCGACGGGGAGAACGCCGAGATGAAGATGTATCTGTCCAA
ACTGAAGGACCTCGTTCCGTTCATGCCCAAGAACAGGAAGCTCACCAAGC
TGGAGATCATCCAGCACGTCATCGACTACATCTGCGACCTGCAGACCGAG
CTGGAGACGCACCCCGAGATGGGCAACTTCGATGCGGCAGCCGCTCTGAC
GGCGGTGAACGGACTCCACGAGGACGAGGACAGCGACATGGAGGATGCGG
ATGCCGAGGCAGAAGCGGAAGTCGATCCAGATATCCTCGCCCAGCGCCTG
AATGCCGAGCAGCCGGCGAAAGTCTCTAGTCCCGCCGCCCGTCTCCCGCT
TACCGATCGCCAAACGCCCAACACTCTTGTGGCGCCCGCCCATCCGCAGC
AGCATCAGCAGCAGCAGCAACTGCAACTGCAGCAGCAACAACTGCAATCA
CAGCAGCAACTGTCCAACAGTTTAGCAACGCCACAGAATGCGGAGAAAGA
CAGCAGACAGTCGTAACGAAGCTTTCTAGACC

BS01423.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1007-PA 600 emc-RA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
emc-RA 2049 CG1007-RA 265..864 17..616 3000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 749664..750227 17..580 2820 100 Plus
3L 28110227 3L 752271..752307 580..616 185 100 Plus
Blast to na_te.dros performed on 2015-02-10 03:24:15 has no hits.

BS01423.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:55 Download gff for BS01423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1007-PA 1..600 17..616 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:54 Download gff for BS01423.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1007-PA 1..600 17..616 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:25 Download gff for BS01423.5prime
Subject Subject Range Query Range Percent Splice Strand
emc-RA 261..864 9..616 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:15:58 Download gff for BS01423.5prime
Subject Subject Range Query Range Percent Splice Strand
emc-RA 261..864 9..616 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:15:58 Download gff for BS01423.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 749660..750227 9..580 99 -> Plus
3L 752272..752307 581..616 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:25 Download gff for BS01423.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 749660..750227 9..580 99 -> Plus
arm_3L 752272..752307 581..616 100   Plus

BS01423.complete Sequence

634 bp (634 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634608

> BS01423.complete
GAAGTTATCAGTCGACATGAAGTCCCTGACGGCCGTCTGCCAGACAGGTG
CCTCCGGAATGCCGGCCTTGAATGCCAGCGGGCGCATCCAGCGCCATCCC
ACGCACCGCGGCGACGGGGAGAACGCCGAGATGAAGATGTATCTGTCCAA
ACTGAAGGACCTCGTTCCGTTCATGCCCAAGAACAGGAAGCTCACCAAGC
TGGAGATCATCCAGCACGTCATCGACTACATCTGCGACCTGCAGACCGAG
CTGGAGACGCACCCCGAGATGGGCAACTTCGATGCGGCAGCCGCTCTGAC
GGCGGTGAACGGACTCCACGAGGACGAGGACAGCGACATGGAGGATGCGG
ATGCCGAGGCAGAAGCGGAAGTCGATCCAGATATCCTCGCCCAGCGCCTG
AATGCCGAGCAGCCGGCGAAAGTCTCTAGTCCCGCCGCCCGTCTCCCGCT
TACCGATCGCCAAACGCCCAACACTCTTGTGGCGCCCGCCCATCCGCAGC
AGCATCAGCAGCAGCAGCAACTGCAACTGCAGCAGCAACAACTGCAATCA
CAGCAGCAACTGTCCAACAGTTTAGCAACGCCACAGAATGCGGAGAAAGA
CAGCAGACAGTCGTAACGAAGCTTTCTAGACCAT

BS01423.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
emc-RA 600 CG1007-PA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
emc-RA 2049 CG1007-RA 265..864 17..616 3000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 749664..750227 17..580 2820 100 Plus
3L 28110227 3L 752271..752307 580..616 185 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:33:20 has no hits.

BS01423.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:04 Download gff for BS01423.complete
Subject Subject Range Query Range Percent Splice Strand
emc-RA 1..600 17..616 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:59 Download gff for BS01423.complete
Subject Subject Range Query Range Percent Splice Strand
emc-RA 255..858 9..616 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:52 Download gff for BS01423.complete
Subject Subject Range Query Range Percent Splice Strand
emc-RA 265..865 17..618 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:04 Download gff for BS01423.complete
Subject Subject Range Query Range Percent Splice Strand
emc-RA 255..858 9..616 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:55 Download gff for BS01423.complete
Subject Subject Range Query Range Percent Splice Strand
emc-RA 265..865 17..618 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:55 Download gff for BS01423.complete
Subject Subject Range Query Range Percent Splice Strand
3L 749664..750227 17..580 100 -> Plus
3L 752272..752308 581..618 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:52 Download gff for BS01423.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 749664..750227 17..580 100 -> Plus
arm_3L 752272..752308 581..618 97   Plus

BS01423.pep Sequence

Translation from 16 to 615

> BS01423.pep
MKSLTAVCQTGASGMPALNASGRIQRHPTHRGDGENAEMKMYLSKLKDLV
PFMPKNRKLTKLEIIQHVIDYICDLQTELETHPEMGNFDAAAALTAVNGL
HEDEDSDMEDADAEAEAEVDPDILAQRLNAEQPAKVSSPAARLPLTDRQT
PNTLVAPAHPQQHQQQQQLQLQQQQLQSQQQLSNSLATPQNAEKDSRQS*

BS01423.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
emc-PA 199 CG1007-PA 1..199 1..199 1017 100 Plus