Clone Sequence Records
BS01423.3prime Sequence
632 bp (631 high quality bases) assembled on 2005-11-29
> BS01423.3prime
ATGGTCTAGAAAGCTTCGTTACGACTGTCTGCTGTCTTTCTCCGCATTCT
GTGGCGTTGCTAAACTGTTGGACAGTTGCTGCTGTGATTGCAGTTGTTGC
TGCTGCAGTTGCAGTTGCTGCTGCTGCTGATGCTGCTGCGGATGGGCGGG
CGCCACAAGAGTGTTGGGCGTTTGGCGATCGGTAAGCGGGAGACGGGCGG
CGGGACTAGAGACTTTCGCCGGCTGCTCGGCATTCAGGCGCTGGGCGAGG
ATATCTGGATCGACTTCCGCTTCTGCCTCGGCATCCGCATCCTCCATGTC
GCTGTCCTCGTCCTCGTGGAGTCCGTTCACCGCCGTCAGAGCGGCTGCCG
CATCGAAGTTGCCCATCTCGGGGTGCGTCTCCAGCTCGGTCTGCAGGTCG
CAGATGTAGTCGATGACGTGCTGGATGATCTCCAGCTTGGTGAGCTTCCT
GTTCTTGGGCATGAACGGAACGAGGTCCTTCAGTTTGGACAGATACATCT
TCATCTCGGCGTTCTCCCCGTCGCCGCGGTGCGTGGGATGGCGCTGGATG
CGCCCGCTGGCATTCAAGGCCGGCATTCCGGAGGCACCTGTCTGGCAGAC
GGCCGTCAGGGACTTCATGTCGACTGATAACT
BS01423.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1007-PA | 600 | emc-RA | 1..600 | 618..19 | 3000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
emc-RA | 2049 | CG1007-RA | 265..864 | 618..19 | 3000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:47:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 749664..750227 | 618..55 | 2820 | 100 | Minus |
3L | 28110227 | 3L | 752271..752307 | 55..19 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:47:46 has no hits.
BS01423.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:54 Download gff for
BS01423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1007-PA | 1..600 | 19..618 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:53 Download gff for
BS01423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1007-PA | 1..600 | 19..618 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:29:42 Download gff for
BS01423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emc-RA | 261..864 | 19..626 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:30 Download gff for
BS01423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emc-RA | 261..864 | 19..626 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:30 Download gff for
BS01423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 752272..752307 | 19..54 | 100 | | Minus |
3L | 749660..750227 | 55..626 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:29:42 Download gff for
BS01423.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 749660..750227 | 55..626 | 99 | -> | Minus |
arm_3L | 752272..752307 | 19..54 | 100 | | Minus |
BS01423.5prime Sequence
632 bp (631 high quality bases) assembled on 2005-11-29
> BS01423.5prime
GAAGTTATCAGTCGACATGAAGTCCCTGACGGCCGTCTGCCAGACAGGTG
CCTCCGGAATGCCGGCCTTGAATGCCAGCGGGCGCATCCAGCGCCATCCC
ACGCACCGCGGCGACGGGGAGAACGCCGAGATGAAGATGTATCTGTCCAA
ACTGAAGGACCTCGTTCCGTTCATGCCCAAGAACAGGAAGCTCACCAAGC
TGGAGATCATCCAGCACGTCATCGACTACATCTGCGACCTGCAGACCGAG
CTGGAGACGCACCCCGAGATGGGCAACTTCGATGCGGCAGCCGCTCTGAC
GGCGGTGAACGGACTCCACGAGGACGAGGACAGCGACATGGAGGATGCGG
ATGCCGAGGCAGAAGCGGAAGTCGATCCAGATATCCTCGCCCAGCGCCTG
AATGCCGAGCAGCCGGCGAAAGTCTCTAGTCCCGCCGCCCGTCTCCCGCT
TACCGATCGCCAAACGCCCAACACTCTTGTGGCGCCCGCCCATCCGCAGC
AGCATCAGCAGCAGCAGCAACTGCAACTGCAGCAGCAACAACTGCAATCA
CAGCAGCAACTGTCCAACAGTTTAGCAACGCCACAGAATGCGGAGAAAGA
CAGCAGACAGTCGTAACGAAGCTTTCTAGACC
BS01423.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1007-PA | 600 | emc-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:24:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
emc-RA | 2049 | CG1007-RA | 265..864 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:24:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 749664..750227 | 17..580 | 2820 | 100 | Plus |
3L | 28110227 | 3L | 752271..752307 | 580..616 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:24:15 has no hits.
BS01423.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:55 Download gff for
BS01423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1007-PA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:54 Download gff for
BS01423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1007-PA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:46:25 Download gff for
BS01423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emc-RA | 261..864 | 9..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:15:58 Download gff for
BS01423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emc-RA | 261..864 | 9..616 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:15:58 Download gff for
BS01423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 749660..750227 | 9..580 | 99 | -> | Plus |
3L | 752272..752307 | 581..616 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:46:25 Download gff for
BS01423.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 749660..750227 | 9..580 | 99 | -> | Plus |
arm_3L | 752272..752307 | 581..616 | 100 | | Plus |
BS01423.complete Sequence
634 bp (634 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634608
> BS01423.complete
GAAGTTATCAGTCGACATGAAGTCCCTGACGGCCGTCTGCCAGACAGGTG
CCTCCGGAATGCCGGCCTTGAATGCCAGCGGGCGCATCCAGCGCCATCCC
ACGCACCGCGGCGACGGGGAGAACGCCGAGATGAAGATGTATCTGTCCAA
ACTGAAGGACCTCGTTCCGTTCATGCCCAAGAACAGGAAGCTCACCAAGC
TGGAGATCATCCAGCACGTCATCGACTACATCTGCGACCTGCAGACCGAG
CTGGAGACGCACCCCGAGATGGGCAACTTCGATGCGGCAGCCGCTCTGAC
GGCGGTGAACGGACTCCACGAGGACGAGGACAGCGACATGGAGGATGCGG
ATGCCGAGGCAGAAGCGGAAGTCGATCCAGATATCCTCGCCCAGCGCCTG
AATGCCGAGCAGCCGGCGAAAGTCTCTAGTCCCGCCGCCCGTCTCCCGCT
TACCGATCGCCAAACGCCCAACACTCTTGTGGCGCCCGCCCATCCGCAGC
AGCATCAGCAGCAGCAGCAACTGCAACTGCAGCAGCAACAACTGCAATCA
CAGCAGCAACTGTCCAACAGTTTAGCAACGCCACAGAATGCGGAGAAAGA
CAGCAGACAGTCGTAACGAAGCTTTCTAGACCAT
BS01423.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
emc-RA | 600 | CG1007-PA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
emc-RA | 2049 | CG1007-RA | 265..864 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 749664..750227 | 17..580 | 2820 | 100 | Plus |
3L | 28110227 | 3L | 752271..752307 | 580..616 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:33:20 has no hits.
BS01423.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:04 Download gff for
BS01423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emc-RA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:59 Download gff for
BS01423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emc-RA | 255..858 | 9..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:52 Download gff for
BS01423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emc-RA | 265..865 | 17..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:04 Download gff for
BS01423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emc-RA | 255..858 | 9..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:55 Download gff for
BS01423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
emc-RA | 265..865 | 17..618 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:55 Download gff for
BS01423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 749664..750227 | 17..580 | 100 | -> | Plus |
3L | 752272..752308 | 581..618 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:52 Download gff for
BS01423.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 749664..750227 | 17..580 | 100 | -> | Plus |
arm_3L | 752272..752308 | 581..618 | 97 | | Plus |
BS01423.pep Sequence
Translation from 16 to 615
> BS01423.pep
MKSLTAVCQTGASGMPALNASGRIQRHPTHRGDGENAEMKMYLSKLKDLV
PFMPKNRKLTKLEIIQHVIDYICDLQTELETHPEMGNFDAAAALTAVNGL
HEDEDSDMEDADAEAEAEVDPDILAQRLNAEQPAKVSSPAARLPLTDRQT
PNTLVAPAHPQQHQQQQQLQLQQQQLQSQQQLSNSLATPQNAEKDSRQS*
BS01423.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:53:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
emc-PA | 199 | CG1007-PA | 1..199 | 1..199 | 1017 | 100 | Plus |