Clone Sequence Records
BS01431.3prime Sequence
707 bp (706 high quality bases) assembled on 2005-11-29
> BS01431.3prime
ATGGTCTAGAAAGCTTCGTTACCAGGGCCTCCAGACGGGCTCAGAGGCGC
CGGACTCCTGCGAGCTAACCGACGCCGTCTCGGATAACGCATTGCCATCG
ACGGATGTCACATCGATCAGTTCGTCCTTGCTGGTCAGGAAGGAGCTGTA
ACTAATGGCGGCAGCGGCGGCTGCCGGTCCATATCCTCCCAGCAGCGGGA
AGGCTAGGCGGCCTGATGATTGCGGTATTTGCTGCTGCTGGTGTTGTTGC
TGTTGCTGCTGCTGCTGGAGCAACTGCGTCTGCAGCTCAATTAGTCGCGT
CGATAGGAATTTCATTATCTTGCGCCCAATCTCATCGGTTTGCTGTGTCT
GCAGCAGGACCTGGGTAATCTGATCGGCAGCATGCACATAGCCGGAGCGA
AAGGACTCCACGTGGGCGGTACTGGTTGAGGTGGGTGGGCTGCCAACACC
AGCCACTACTCCCTGCAGCGAAAGACCACCCCGCTGCTTGAGTTTCCTCA
TGTGATCCACGGTCAACTCCAGGATATCCGCCTTCTCCAGCCGGGTGACG
TGCTCGCCCTCCTGCTGCAGGCACTCCACCATCAGATCCTTGAGATCGTC
CAGACACTTGTTGATCCTGGCTCGCCGTTTGCGCTCCAGCAGCGGCTTCA
TCACCTTGCGGTACTGATACGTCTTGGACATCTCCATGACCATGTCGACT
GATAACT
BS01431.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8346-PA | 675 | HLHm3-RA | 1..675 | 693..19 | 3375 | 100 | Minus |
CG14548-PA | 588 | HLHmbeta-RA | 13..113 | 687..587 | 255 | 90 | Minus |
CG8361-PA | 561 | HLHm7-RA | 31..121 | 669..579 | 255 | 91.2 | Minus |
CG14548-PA | 588 | HLHmbeta-RA | 136..202 | 564..498 | 210 | 92.5 | Minus |
CG8333-PA | 618 | HLHmgamma-RA | 22..62 | 684..644 | 180 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:52:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m3-HLH-RA | 1305 | CG8346-RA | 197..872 | 694..19 | 3380 | 100 | Minus |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 143..336 | 687..494 | 640 | 88.7 | Minus |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 114..280 | 684..518 | 430 | 83.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:52:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26022019..26022694 | 694..19 | 3380 | 100 | Minus |
3R | 32079331 | 3R | 26005688..26005881 | 494..687 | 640 | 88.7 | Plus |
3R | 32079331 | 3R | 25999964..26000130 | 684..518 | 430 | 83.8 | Minus |
3R | 32079331 | 3R | 26037178..26037291 | 684..571 | 375 | 88.6 | Minus |
3R | 32079331 | 3R | 25997756..25997928 | 681..509 | 235 | 75.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:52:26 has no hits.
BS01431.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:56 Download gff for
BS01431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm3-PA | 1..675 | 19..693 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:55 Download gff for
BS01431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8346-PA | 1..675 | 19..693 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:29:55 Download gff for
BS01431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m3-HLH-RA | 189..878 | 13..701 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:05 Download gff for
BS01431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m3-HLH-RA | 189..878 | 13..701 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:05 Download gff for
BS01431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26022011..26022690 | 23..701 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:29:55 Download gff for
BS01431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21847733..21848412 | 23..701 | 99 | -> | Minus |
BS01431.5prime Sequence
707 bp (706 high quality bases) assembled on 2005-11-29
> BS01431.5prime
GAAGTTATCAGTCGACATGGTCATGGAGATGTCCAAGACGTATCAGTACC
GCAAGGTGATGAAGCCGCTGCTGGAGCGCAAACGGCGAGCCAGGATCAAC
AAGTGTCTGGACGATCTCAAGGATCTGATGGTGGAGTGCCTGCAGCAGGA
GGGCGAGCACGTCACCCGGCTGGAGAAGGCGGATATCCTGGAGTTGACCG
TGGATCACATGAGGAAACTCAAGCAGCGGGGTGGTCTTTCGCTGCAGGGA
GTAGTGGCTGGTGTTGGCAGCCCACCCACCTCAACCAGTACCGCCCACGT
GGAGTCCTTTCGCTCCGGCTATGTGCATGCTGCCGATCAGATTACCCAGG
TCCTGCTGCAGACACAGCAAACCGATGAGATTGGGCGCAAGATAATGAAA
TTCCTATCGACGCGACTAATTGAGCTGCAGACGCAGTTGCTCCAGCAGCA
GCAGCAACAGCAACAACACCAGCAGCAGCAAATACCGCAATCATCAGGCC
GCCTAGCCTTCCCGCTGCTGGGAGGATATGGACCGGCAGCCGCCGCTGCC
GCCATTAGTTACAGCTCCTTCCTGACCAGCAAGGACGAACTGATCGATGT
GACATCCGTCGATGGCAATGCGTTATCCGAGACGGCGTCGGTTAGCTCGC
AGGAGTCCGGCGCCTCTGAGCCCGTCTGGAGGCCCTGGTAACGAAGCTTT
CTAGACC
BS01431.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8346-PA | 675 | HLHm3-RA | 1..675 | 17..691 | 3375 | 100 | Plus |
CG14548-PA | 588 | HLHmbeta-RA | 13..113 | 23..123 | 255 | 90 | Plus |
CG8361-PA | 561 | HLHm7-RA | 31..121 | 41..131 | 255 | 91.2 | Plus |
CG14548-PA | 588 | HLHmbeta-RA | 136..202 | 146..212 | 210 | 92.5 | Plus |
CG8333-PA | 618 | HLHmgamma-RA | 22..62 | 26..66 | 180 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m3-HLH-RA | 1305 | CG8346-RA | 197..872 | 16..691 | 3380 | 100 | Plus |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 143..336 | 23..216 | 640 | 88.7 | Plus |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 114..280 | 26..192 | 430 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26022019..26022694 | 16..691 | 3380 | 100 | Plus |
3R | 32079331 | 3R | 26005688..26005881 | 216..23 | 640 | 88.7 | Minus |
3R | 32079331 | 3R | 25999964..26000130 | 26..192 | 430 | 83.8 | Plus |
3R | 32079331 | 3R | 26037178..26037291 | 26..139 | 375 | 88.6 | Plus |
3R | 32079331 | 3R | 25997756..25997928 | 29..201 | 235 | 75.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:14:54 has no hits.
BS01431.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:57 Download gff for
BS01431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm3-PA | 1..675 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:56 Download gff for
BS01431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8346-PA | 1..675 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:35:45 Download gff for
BS01431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m3-HLH-RA | 189..878 | 9..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:10:18 Download gff for
BS01431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m3-HLH-RA | 189..878 | 9..697 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:10:18 Download gff for
BS01431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26022011..26022690 | 9..687 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:35:45 Download gff for
BS01431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21847733..21848412 | 9..687 | 99 | -> | Plus |
BS01431.complete Sequence
709 bp (709 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634609
> BS01431.complete
GAAGTTATCAGTCGACATGGTCATGGAGATGTCCAAGACGTATCAGTACC
GCAAGGTGATGAAGCCGCTGCTGGAGCGCAAACGGCGAGCCAGGATCAAC
AAGTGTCTGGACGATCTCAAGGATCTGATGGTGGAGTGCCTGCAGCAGGA
GGGCGAGCACGTCACCCGGCTGGAGAAGGCGGATATCCTGGAGTTGACCG
TGGATCACATGAGGAAACTCAAGCAGCGGGGTGGTCTTTCGCTGCAGGGA
GTAGTGGCTGGTGTTGGCAGCCCACCCACCTCAACCAGTACCGCCCACGT
GGAGTCCTTTCGCTCCGGCTATGTGCATGCTGCCGATCAGATTACCCAGG
TCCTGCTGCAGACACAGCAAACCGATGAGATTGGGCGCAAGATAATGAAA
TTCCTATCGACGCGACTAATTGAGCTGCAGACGCAGTTGCTCCAGCAGCA
GCAGCAACAGCAACAACACCAGCAGCAGCAAATACCGCAATCATCAGGCC
GCCTAGCCTTCCCGCTGCTGGGAGGATATGGACCGGCAGCCGCCGCTGCC
GCCATTAGTTACAGCTCCTTCCTGACCAGCAAGGACGAACTGATCGATGT
GACATCCGTCGATGGCAATGCGTTATCCGAGACGGCGTCGGTTAGCTCGC
AGGAGTCCGGCGCCTCTGAGCCCGTCTGGAGGCCCTGGTAACGAAGCTTT
CTAGACCAT
BS01431.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:43:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m3-HLH-RA | 675 | CG8346-PA | 1..675 | 17..691 | 3375 | 100 | Plus |
E(spl)mbeta-HLH-RA | 588 | CG14548-PA | 13..206 | 23..216 | 640 | 88.7 | Plus |
E(spl)mgamma-HLH-RA | 618 | CG8333-PA | 22..188 | 26..192 | 430 | 83.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:43:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m3-HLH-RA | 1305 | CG8346-RA | 197..872 | 16..691 | 3380 | 100 | Plus |
E(spl)mbeta-HLH-RA | 978 | CG14548-RA | 143..336 | 23..216 | 640 | 88.7 | Plus |
E(spl)mgamma-HLH-RA | 911 | CG8333-RA | 114..280 | 26..192 | 430 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:43:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26022019..26022694 | 16..691 | 3380 | 100 | Plus |
3R | 32079331 | 3R | 26005688..26005881 | 216..23 | 640 | 88.7 | Minus |
3R | 32079331 | 3R | 25999964..26000130 | 26..192 | 430 | 83.8 | Plus |
3R | 32079331 | 3R | 26037178..26037291 | 26..139 | 375 | 88.6 | Plus |
3R | 32079331 | 3R | 25997756..25997928 | 29..201 | 235 | 75.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:43:18 has no hits.
BS01431.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:08 Download gff for
BS01431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm3-RA | 1..675 | 17..691 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:03 Download gff for
BS01431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm3-RA | 297..986 | 9..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:31 Download gff for
BS01431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m3-HLH-RA | 198..872 | 17..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:08 Download gff for
BS01431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLHm3-RA | 297..986 | 9..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:05 Download gff for
BS01431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E(spl)m3-HLH-RA | 198..872 | 17..693 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:05 Download gff for
BS01431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26022020..26022694 | 17..693 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:31 Download gff for
BS01431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21847742..21848416 | 17..693 | 99 | | Plus |
BS01431.pep Sequence
Translation from 16 to 690
> BS01431.pep
MVMEMSKTYQYRKVMKPLLERKRRARINKCLDDLKDLMVECLQQEGEHVT
RLEKADILELTVDHMRKLKQRGGLSLQGVVAGVGSPPTSTSTAHVESFRS
GYVHAADQITQVLLQTQQTDEIGRKIMKFLSTRLIELQTQLLQQQQQQQQ
HQQQQIPQSSGRLAFPLLGGYGPAAAAAAISYSSFLTSKDELIDVTSVDG
NALSETASVSSQESGASEPVWRPW*
BS01431.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E(spl)m3-HLH-PA | 224 | CG8346-PA | 1..224 | 1..224 | 1125 | 100 | Plus |
E(spl)mbeta-HLH-PA | 195 | CG14548-PA | 5..195 | 3..224 | 422 | 45.5 | Plus |
E(spl)mgamma-HLH-PA | 205 | CG8333-PA | 8..205 | 4..224 | 353 | 42 | Plus |
E(spl)m7-HLH-PA | 186 | CG8361-PA | 6..186 | 4..224 | 323 | 38.5 | Plus |
E(spl)mdelta-HLH-PA | 173 | CG8328-PA | 9..136 | 5..140 | 252 | 42.3 | Plus |