Clone BS01431 Report

Search the DGRC for BS01431

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:14
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptE(spl)m3-HLH-RA
Protein status:BS01431.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01431.3prime Sequence

707 bp (706 high quality bases) assembled on 2005-11-29

> BS01431.3prime
ATGGTCTAGAAAGCTTCGTTACCAGGGCCTCCAGACGGGCTCAGAGGCGC
CGGACTCCTGCGAGCTAACCGACGCCGTCTCGGATAACGCATTGCCATCG
ACGGATGTCACATCGATCAGTTCGTCCTTGCTGGTCAGGAAGGAGCTGTA
ACTAATGGCGGCAGCGGCGGCTGCCGGTCCATATCCTCCCAGCAGCGGGA
AGGCTAGGCGGCCTGATGATTGCGGTATTTGCTGCTGCTGGTGTTGTTGC
TGTTGCTGCTGCTGCTGGAGCAACTGCGTCTGCAGCTCAATTAGTCGCGT
CGATAGGAATTTCATTATCTTGCGCCCAATCTCATCGGTTTGCTGTGTCT
GCAGCAGGACCTGGGTAATCTGATCGGCAGCATGCACATAGCCGGAGCGA
AAGGACTCCACGTGGGCGGTACTGGTTGAGGTGGGTGGGCTGCCAACACC
AGCCACTACTCCCTGCAGCGAAAGACCACCCCGCTGCTTGAGTTTCCTCA
TGTGATCCACGGTCAACTCCAGGATATCCGCCTTCTCCAGCCGGGTGACG
TGCTCGCCCTCCTGCTGCAGGCACTCCACCATCAGATCCTTGAGATCGTC
CAGACACTTGTTGATCCTGGCTCGCCGTTTGCGCTCCAGCAGCGGCTTCA
TCACCTTGCGGTACTGATACGTCTTGGACATCTCCATGACCATGTCGACT
GATAACT

BS01431.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8346-PA 675 HLHm3-RA 1..675 693..19 3375 100 Minus
CG14548-PA 588 HLHmbeta-RA 13..113 687..587 255 90 Minus
CG8361-PA 561 HLHm7-RA 31..121 669..579 255 91.2 Minus
CG14548-PA 588 HLHmbeta-RA 136..202 564..498 210 92.5 Minus
CG8333-PA 618 HLHmgamma-RA 22..62 684..644 180 97.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m3-HLH-RA 1305 CG8346-RA 197..872 694..19 3380 100 Minus
E(spl)mbeta-HLH-RA 978 CG14548-RA 143..336 687..494 640 88.7 Minus
E(spl)mgamma-HLH-RA 911 CG8333-RA 114..280 684..518 430 83.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26022019..26022694 694..19 3380 100 Minus
3R 32079331 3R 26005688..26005881 494..687 640 88.7 Plus
3R 32079331 3R 25999964..26000130 684..518 430 83.8 Minus
3R 32079331 3R 26037178..26037291 684..571 375 88.6 Minus
3R 32079331 3R 25997756..25997928 681..509 235 75.7 Minus
Blast to na_te.dros performed on 2015-02-12 11:52:26 has no hits.

BS01431.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:56 Download gff for BS01431.3prime
Subject Subject Range Query Range Percent Splice Strand
HLHm3-PA 1..675 19..693 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:55 Download gff for BS01431.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8346-PA 1..675 19..693 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:29:55 Download gff for BS01431.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m3-HLH-RA 189..878 13..701 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:05 Download gff for BS01431.3prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m3-HLH-RA 189..878 13..701 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:05 Download gff for BS01431.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26022011..26022690 23..701 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:29:55 Download gff for BS01431.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21847733..21848412 23..701 99 -> Minus

BS01431.5prime Sequence

707 bp (706 high quality bases) assembled on 2005-11-29

> BS01431.5prime
GAAGTTATCAGTCGACATGGTCATGGAGATGTCCAAGACGTATCAGTACC
GCAAGGTGATGAAGCCGCTGCTGGAGCGCAAACGGCGAGCCAGGATCAAC
AAGTGTCTGGACGATCTCAAGGATCTGATGGTGGAGTGCCTGCAGCAGGA
GGGCGAGCACGTCACCCGGCTGGAGAAGGCGGATATCCTGGAGTTGACCG
TGGATCACATGAGGAAACTCAAGCAGCGGGGTGGTCTTTCGCTGCAGGGA
GTAGTGGCTGGTGTTGGCAGCCCACCCACCTCAACCAGTACCGCCCACGT
GGAGTCCTTTCGCTCCGGCTATGTGCATGCTGCCGATCAGATTACCCAGG
TCCTGCTGCAGACACAGCAAACCGATGAGATTGGGCGCAAGATAATGAAA
TTCCTATCGACGCGACTAATTGAGCTGCAGACGCAGTTGCTCCAGCAGCA
GCAGCAACAGCAACAACACCAGCAGCAGCAAATACCGCAATCATCAGGCC
GCCTAGCCTTCCCGCTGCTGGGAGGATATGGACCGGCAGCCGCCGCTGCC
GCCATTAGTTACAGCTCCTTCCTGACCAGCAAGGACGAACTGATCGATGT
GACATCCGTCGATGGCAATGCGTTATCCGAGACGGCGTCGGTTAGCTCGC
AGGAGTCCGGCGCCTCTGAGCCCGTCTGGAGGCCCTGGTAACGAAGCTTT
CTAGACC

BS01431.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8346-PA 675 HLHm3-RA 1..675 17..691 3375 100 Plus
CG14548-PA 588 HLHmbeta-RA 13..113 23..123 255 90 Plus
CG8361-PA 561 HLHm7-RA 31..121 41..131 255 91.2 Plus
CG14548-PA 588 HLHmbeta-RA 136..202 146..212 210 92.5 Plus
CG8333-PA 618 HLHmgamma-RA 22..62 26..66 180 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m3-HLH-RA 1305 CG8346-RA 197..872 16..691 3380 100 Plus
E(spl)mbeta-HLH-RA 978 CG14548-RA 143..336 23..216 640 88.7 Plus
E(spl)mgamma-HLH-RA 911 CG8333-RA 114..280 26..192 430 83.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26022019..26022694 16..691 3380 100 Plus
3R 32079331 3R 26005688..26005881 216..23 640 88.7 Minus
3R 32079331 3R 25999964..26000130 26..192 430 83.8 Plus
3R 32079331 3R 26037178..26037291 26..139 375 88.6 Plus
3R 32079331 3R 25997756..25997928 29..201 235 75.7 Plus
Blast to na_te.dros performed on 2015-02-13 08:14:54 has no hits.

BS01431.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:57 Download gff for BS01431.5prime
Subject Subject Range Query Range Percent Splice Strand
HLHm3-PA 1..675 17..691 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:56 Download gff for BS01431.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8346-PA 1..675 17..691 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:35:45 Download gff for BS01431.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m3-HLH-RA 189..878 9..697 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:10:18 Download gff for BS01431.5prime
Subject Subject Range Query Range Percent Splice Strand
E(spl)m3-HLH-RA 189..878 9..697 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:10:18 Download gff for BS01431.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26022011..26022690 9..687 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:35:45 Download gff for BS01431.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21847733..21848412 9..687 99 -> Plus

BS01431.complete Sequence

709 bp (709 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634609

> BS01431.complete
GAAGTTATCAGTCGACATGGTCATGGAGATGTCCAAGACGTATCAGTACC
GCAAGGTGATGAAGCCGCTGCTGGAGCGCAAACGGCGAGCCAGGATCAAC
AAGTGTCTGGACGATCTCAAGGATCTGATGGTGGAGTGCCTGCAGCAGGA
GGGCGAGCACGTCACCCGGCTGGAGAAGGCGGATATCCTGGAGTTGACCG
TGGATCACATGAGGAAACTCAAGCAGCGGGGTGGTCTTTCGCTGCAGGGA
GTAGTGGCTGGTGTTGGCAGCCCACCCACCTCAACCAGTACCGCCCACGT
GGAGTCCTTTCGCTCCGGCTATGTGCATGCTGCCGATCAGATTACCCAGG
TCCTGCTGCAGACACAGCAAACCGATGAGATTGGGCGCAAGATAATGAAA
TTCCTATCGACGCGACTAATTGAGCTGCAGACGCAGTTGCTCCAGCAGCA
GCAGCAACAGCAACAACACCAGCAGCAGCAAATACCGCAATCATCAGGCC
GCCTAGCCTTCCCGCTGCTGGGAGGATATGGACCGGCAGCCGCCGCTGCC
GCCATTAGTTACAGCTCCTTCCTGACCAGCAAGGACGAACTGATCGATGT
GACATCCGTCGATGGCAATGCGTTATCCGAGACGGCGTCGGTTAGCTCGC
AGGAGTCCGGCGCCTCTGAGCCCGTCTGGAGGCCCTGGTAACGAAGCTTT
CTAGACCAT

BS01431.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m3-HLH-RA 675 CG8346-PA 1..675 17..691 3375 100 Plus
E(spl)mbeta-HLH-RA 588 CG14548-PA 13..206 23..216 640 88.7 Plus
E(spl)mgamma-HLH-RA 618 CG8333-PA 22..188 26..192 430 83.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m3-HLH-RA 1305 CG8346-RA 197..872 16..691 3380 100 Plus
E(spl)mbeta-HLH-RA 978 CG14548-RA 143..336 23..216 640 88.7 Plus
E(spl)mgamma-HLH-RA 911 CG8333-RA 114..280 26..192 430 83.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26022019..26022694 16..691 3380 100 Plus
3R 32079331 3R 26005688..26005881 216..23 640 88.7 Minus
3R 32079331 3R 25999964..26000130 26..192 430 83.8 Plus
3R 32079331 3R 26037178..26037291 26..139 375 88.6 Plus
3R 32079331 3R 25997756..25997928 29..201 235 75.7 Plus
Blast to na_te.dros performed on 2014-11-27 19:43:18 has no hits.

BS01431.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:08 Download gff for BS01431.complete
Subject Subject Range Query Range Percent Splice Strand
HLHm3-RA 1..675 17..691 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:03 Download gff for BS01431.complete
Subject Subject Range Query Range Percent Splice Strand
HLHm3-RA 297..986 9..697 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:31 Download gff for BS01431.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)m3-HLH-RA 198..872 17..693 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:08 Download gff for BS01431.complete
Subject Subject Range Query Range Percent Splice Strand
HLHm3-RA 297..986 9..697 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:05 Download gff for BS01431.complete
Subject Subject Range Query Range Percent Splice Strand
E(spl)m3-HLH-RA 198..872 17..693 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:05 Download gff for BS01431.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26022020..26022694 17..693 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:31 Download gff for BS01431.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21847742..21848416 17..693 99   Plus

BS01431.pep Sequence

Translation from 16 to 690

> BS01431.pep
MVMEMSKTYQYRKVMKPLLERKRRARINKCLDDLKDLMVECLQQEGEHVT
RLEKADILELTVDHMRKLKQRGGLSLQGVVAGVGSPPTSTSTAHVESFRS
GYVHAADQITQVLLQTQQTDEIGRKIMKFLSTRLIELQTQLLQQQQQQQQ
HQQQQIPQSSGRLAFPLLGGYGPAAAAAAISYSSFLTSKDELIDVTSVDG
NALSETASVSSQESGASEPVWRPW*

BS01431.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
E(spl)m3-HLH-PA 224 CG8346-PA 1..224 1..224 1125 100 Plus
E(spl)mbeta-HLH-PA 195 CG14548-PA 5..195 3..224 422 45.5 Plus
E(spl)mgamma-HLH-PA 205 CG8333-PA 8..205 4..224 353 42 Plus
E(spl)m7-HLH-PA 186 CG8361-PA 6..186 4..224 323 38.5 Plus
E(spl)mdelta-HLH-PA 173 CG8328-PA 9..136 5..140 252 42.3 Plus