Clone BS01433 Report

Search the DGRC for BS01433

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:14
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptMED6-RA
Protein status:BS01433.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01433.3prime Sequence

782 bp (735 high quality bases) assembled on 2005-11-29

> BS01433.3prime
ATGGTCTAGAAAGCTTCGTCACTTGCTCTTCTTTTCGGGCGGTGGCTTCA
TGTCCACACCCTCGGTTTTGATATCTAGCGGTCCTGTGGCATTGTTCATT
TCGGAGGCATTTCTCGCTGTGTTCAGATCATCGCCCGCTGGTGGCGGCTG
CTGGAGATTCTGCAGCATGGGCGGTATTGGTGGGGGAAATTTACGCAAAA
GCTCTGCCAGCAGCATGTCCACACGCTGCTTCTGGAACAGTGTGCCGCTG
TTCTCATCCTTCGCTGAGTTGGCGTCCTTCTTATCTGACTTGGATCTATC
TGAAAAAACTTTATTGGAAGAGAAGTCCCACGTGTAGCCCTTGTTGGGAT
GGTAGCGGGCATAGCTACTAGCCTCCTCGAAGGCGGATTGCAGGTTCACC
ACGGTGTTGAGAATGCGGGAATTGATGACGTTGGCAAGATCTGGCGCCTT
GTAGACGGTGCCACCAATGATGTAGTAATCGGCAATCGGCGTGGCTTCCG
AGGGATTATGACGGTGCTGCTTGCGGATTACATACAGGATGGGCTCCGCC
ACGTGCAGCAGTATGTATTCCAGACCGATCATGTTGTGCAGATGCTCGGG
ACCAAGGCGCTGCATCCGAACAGTCTCGTTGTTGCACATGTGATCATAGA
AGGGATTCGACTTGCGGCAGAAGTAGTCCATGACGGTCTGCGGGCTGAGG
GTGGCCATCATCTGGGTGTCGTGCCAGGAAAGGCGCAGGTGGTCATTGGT
CATCTGTCGGCTGGCCATGTCGACTGATAACT

BS01433.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9473-PB 750 MED6-RB 1..750 768..19 3750 100 Minus
CG9473-PA 750 MED6-RA 1..750 768..19 3750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
MED6-RE 1617 CG9473-RE 458..1207 768..19 3750 100 Minus
MED6-RD 1814 CG9473-RD 655..1404 768..19 3750 100 Minus
MED6-RC 1770 CG9473-RC 611..1360 768..19 3750 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9766441..9766727 19..305 1435 100 Plus
3R 32079331 3R 9767177..9767358 587..768 910 100 Plus
3R 32079331 3R 9766948..9767122 412..586 875 100 Plus
3R 32079331 3R 9766788..9766893 306..411 530 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:12:50 has no hits.

BS01433.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:58 Download gff for BS01433.3prime
Subject Subject Range Query Range Percent Splice Strand
MED6-PA 1..750 19..768 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:57 Download gff for BS01433.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9473-PA 1..750 19..768 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:16:47 Download gff for BS01433.3prime
Subject Subject Range Query Range Percent Splice Strand
MED6-RC 603..1360 19..776 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:37:05 Download gff for BS01433.3prime
Subject Subject Range Query Range Percent Splice Strand
MED6-RC 603..1360 19..776 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:37:05 Download gff for BS01433.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9766441..9766727 19..305 100 <- Plus
3R 9766788..9766893 306..411 100 <- Plus
3R 9766948..9767122 412..586 100 <- Plus
3R 9767177..9767366 587..776 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:16:47 Download gff for BS01433.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5592163..5592449 19..305 100 <- Plus
arm_3R 5592510..5592615 306..411 100 <- Plus
arm_3R 5592670..5592844 412..586 100 <- Plus
arm_3R 5592899..5593088 587..776 98   Plus

BS01433.5prime Sequence

782 bp (680 high quality bases) assembled on 2005-11-29

> BS01433.5prime
GAAGTTATCAGTCGACATGGCCAGCCGACAGATGACCAATGACCACCTGC
GCCTTTCCTGGCACGACACCCAGATGATGGCCACCCTCAGCCCGCAGACC
GTCATGGACTACTTCTGCCGCAAGTCGAATCCCTTCTATGATCACATGTG
CAACAACGAGACTGTTCGGATGCAGCGCCTTGGTCCCGAGCATCTGCACA
ACATGATCGGTCTGGAATACATACTGCTGCACGTGGCGGAGCCCATCCTG
TATGTAATCCGCAAGCAGCACCGTCATAATCCCTCGGAAGCCACGCCGAT
TGCCGATTACTACATCATTGGTGGCACCGTCTACAAGGCGCCAGATCTTG
CCAACGTCATCAATTCCCGCATTCTCAACACCGTGGTGAACCTGCAATCC
GCCTTCGAGGAGGCTAGTAGCTATGCCCGCTACCATCCCAACAAGGGCTA
CACGTGGGACTTCTCTTCCAATAAAGTTTTTTCAGATAGATCCAAGTCAG
ATAAGAAGGACGCCAACTCAGCGAAGGATGAGAACAGCGGCACACTGTTC
CAGAAGCAGCGTGTGGACATGCTGCTGGCAGAGCTTTTGCGTAAATTTCC
CCCACCAATACCGCCCATGCTGCAGAATCTCCAGCAGCCGCCACCAGCGG
GCGATGATCTGAACACAGCGAGAAATGCCTCCGAAATGAACAATGCCACA
GGACCGCTAGATATCAAAACCGAGGGTGTGGACATGAAGCCACCGCCCGA
AAAGAAGAGCAAGTGACGAAGCTTTCTAGACC

BS01433.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9473-PB 750 MED6-RB 1..750 17..766 3750 100 Plus
CG9473-PA 750 MED6-RA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
MED6-RE 1617 CG9473-RE 458..1207 17..766 3750 100 Plus
MED6-RD 1814 CG9473-RD 655..1404 17..766 3750 100 Plus
MED6-RC 1770 CG9473-RC 611..1360 17..766 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9766441..9766727 766..480 1435 100 Minus
3R 32079331 3R 9767177..9767358 198..17 910 100 Minus
3R 32079331 3R 9766948..9767122 373..199 875 100 Minus
3R 32079331 3R 9766788..9766893 479..374 530 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:14:30 has no hits.

BS01433.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:59 Download gff for BS01433.5prime
Subject Subject Range Query Range Percent Splice Strand
MED6-PA 1..750 17..766 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:59 Download gff for BS01433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9473-PA 1..750 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:00 Download gff for BS01433.5prime
Subject Subject Range Query Range Percent Splice Strand
MED6-RC 603..1360 9..766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:30:20 Download gff for BS01433.5prime
Subject Subject Range Query Range Percent Splice Strand
MED6-RC 603..1360 9..766 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:30:20 Download gff for BS01433.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9766441..9766727 480..766 100 <- Minus
3R 9766788..9766893 374..479 100 <- Minus
3R 9766948..9767122 199..373 100 <- Minus
3R 9767177..9767366 9..198 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:00 Download gff for BS01433.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5592163..5592449 480..766 100 <- Minus
arm_3R 5592510..5592615 374..479 100 <- Minus
arm_3R 5592670..5592844 199..373 100 <- Minus
arm_3R 5592899..5593088 9..198 98   Minus

BS01433.complete Sequence

784 bp (784 high quality bases) assembled on 2005-06-23

> BS01433.complete
GAAGTTATCAGTCGACATGGCCAGCCGACAGATGACCAATGACCACCTGC
GCCTTTCCTGGCACGACACCCAGATGATGGCCACCCTCAGCCCGCAGACC
GTCATGGACTACTTCTGCCGCAAGTCGAATCCCTTCTATGATCACATGTG
CAACAACGAGACTGTTCGGATGCAGCGCCTTGGTCCCGAGCATCTGCACA
ACATGATCGGTCTGGAATACATACTGCTGCACGTGGCGGAGCCCATCCTG
TATGTAATCCGCAAGCAGCACCGTCATAATCCCTCGGAAGCCACGCCGAT
TGCCGATTACTACATCATTGGTGGCACCGTCTACAAGGCGCCAGATCTTG
CCAACGTCATCAATTCCCGCATTCTCAACACCGTGGTGAACCTGCAATCC
GCCTTCGAGGAGGCTAGTAGCTATGCCCGCTACCATCCCAACAAGGGCTA
CACGTGGGACTTCTCTTCCAATAAAGTTTTTTCAGATAGATCCAAGTCAG
ATAAGAAGGACGCCAACTCAGCGAAGGATGAGAACAGCGGCACACTGTTC
CAGAAGCAGCGTGTGGACATGCTGCTGGCAGAGCTTTTGCGTAAATTTCC
CCCACCAATACCGCCCATGCTGCAGAATCTCCAGCAGCCGCCACCAGCGG
GCGATGATCTGAACACAGCGAGAAATGCCTCCGAAATGAACAATGCCACA
GGACCGCTAGATATCAAAACCGAGGGTGTGGACATGAAGCCACCGCCCGA
AAAGAAGAGCAAGTGACGAAGCTTTCTAGACCAT

BS01433.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
MED6-RE 750 CG9473-PE 1..750 17..766 3750 100 Plus
MED6-RD 750 CG9473-PD 1..750 17..766 3750 100 Plus
MED6-RC 750 CG9473-PC 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
MED6-RE 1617 CG9473-RE 458..1207 17..766 3750 100 Plus
MED6-RD 1814 CG9473-RD 655..1404 17..766 3750 100 Plus
MED6-RC 1770 CG9473-RC 611..1360 17..766 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9766441..9766727 766..480 1435 100 Minus
3R 32079331 3R 9767177..9767358 198..17 910 100 Minus
3R 32079331 3R 9766948..9767122 373..199 875 100 Minus
3R 32079331 3R 9766788..9766893 479..374 530 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:41:00 has no hits.

BS01433.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:09 Download gff for BS01433.complete
Subject Subject Range Query Range Percent Splice Strand
MED6-RA 1..750 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:05 Download gff for BS01433.complete
Subject Subject Range Query Range Percent Splice Strand
MED6-RA 628..1385 9..766 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:39 Download gff for BS01433.complete
Subject Subject Range Query Range Percent Splice Strand
MED6-RC 611..1360 17..768 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:09 Download gff for BS01433.complete
Subject Subject Range Query Range Percent Splice Strand
MED6-RA 628..1385 9..766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:38 Download gff for BS01433.complete
Subject Subject Range Query Range Percent Splice Strand
MED6-RC 611..1360 17..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:38 Download gff for BS01433.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9766948..9767122 199..373 100 <- Minus
3R 9767177..9767358 17..198 100   Minus
3R 9766439..9766727 480..768 99 <- Minus
3R 9766788..9766893 374..479 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:39 Download gff for BS01433.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5592510..5592615 374..479 100 <- Minus
arm_3R 5592161..5592449 480..768 99 <- Minus
arm_3R 5592670..5592844 199..373 100 <- Minus
arm_3R 5592899..5593080 17..198 100   Minus

BS01433.pep Sequence

Translation from 16 to 765

> BS01433.pep
MASRQMTNDHLRLSWHDTQMMATLSPQTVMDYFCRKSNPFYDHMCNNETV
RMQRLGPEHLHNMIGLEYILLHVAEPILYVIRKQHRHNPSEATPIADYYI
IGGTVYKAPDLANVINSRILNTVVNLQSAFEEASSYARYHPNKGYTWDFS
SNKVFSDRSKSDKKDANSAKDENSGTLFQKQRVDMLLAELLRKFPPPIPP
MLQNLQQPPPAGDDLNTARNASEMNNATGPLDIKTEGVDMKPPPEKKSK*

BS01433.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
MED6-PE 249 CG9473-PE 1..249 1..249 1325 100 Plus
MED6-PD 249 CG9473-PD 1..249 1..249 1325 100 Plus
MED6-PC 249 CG9473-PC 1..249 1..249 1325 100 Plus
MED6-PA 249 CG9473-PA 1..249 1..249 1325 100 Plus
MED6-PB 249 CG9473-PB 1..249 1..249 1325 100 Plus