Clone Sequence Records
BS01433.3prime Sequence
782 bp (735 high quality bases) assembled on 2005-11-29
> BS01433.3prime
ATGGTCTAGAAAGCTTCGTCACTTGCTCTTCTTTTCGGGCGGTGGCTTCA
TGTCCACACCCTCGGTTTTGATATCTAGCGGTCCTGTGGCATTGTTCATT
TCGGAGGCATTTCTCGCTGTGTTCAGATCATCGCCCGCTGGTGGCGGCTG
CTGGAGATTCTGCAGCATGGGCGGTATTGGTGGGGGAAATTTACGCAAAA
GCTCTGCCAGCAGCATGTCCACACGCTGCTTCTGGAACAGTGTGCCGCTG
TTCTCATCCTTCGCTGAGTTGGCGTCCTTCTTATCTGACTTGGATCTATC
TGAAAAAACTTTATTGGAAGAGAAGTCCCACGTGTAGCCCTTGTTGGGAT
GGTAGCGGGCATAGCTACTAGCCTCCTCGAAGGCGGATTGCAGGTTCACC
ACGGTGTTGAGAATGCGGGAATTGATGACGTTGGCAAGATCTGGCGCCTT
GTAGACGGTGCCACCAATGATGTAGTAATCGGCAATCGGCGTGGCTTCCG
AGGGATTATGACGGTGCTGCTTGCGGATTACATACAGGATGGGCTCCGCC
ACGTGCAGCAGTATGTATTCCAGACCGATCATGTTGTGCAGATGCTCGGG
ACCAAGGCGCTGCATCCGAACAGTCTCGTTGTTGCACATGTGATCATAGA
AGGGATTCGACTTGCGGCAGAAGTAGTCCATGACGGTCTGCGGGCTGAGG
GTGGCCATCATCTGGGTGTCGTGCCAGGAAAGGCGCAGGTGGTCATTGGT
CATCTGTCGGCTGGCCATGTCGACTGATAACT
BS01433.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9473-PB | 750 | MED6-RB | 1..750 | 768..19 | 3750 | 100 | Minus |
CG9473-PA | 750 | MED6-RA | 1..750 | 768..19 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:12:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED6-RE | 1617 | CG9473-RE | 458..1207 | 768..19 | 3750 | 100 | Minus |
MED6-RD | 1814 | CG9473-RD | 655..1404 | 768..19 | 3750 | 100 | Minus |
MED6-RC | 1770 | CG9473-RC | 611..1360 | 768..19 | 3750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:12:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9766441..9766727 | 19..305 | 1435 | 100 | Plus |
3R | 32079331 | 3R | 9767177..9767358 | 587..768 | 910 | 100 | Plus |
3R | 32079331 | 3R | 9766948..9767122 | 412..586 | 875 | 100 | Plus |
3R | 32079331 | 3R | 9766788..9766893 | 306..411 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:12:50 has no hits.
BS01433.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:58 Download gff for
BS01433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-PA | 1..750 | 19..768 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:57 Download gff for
BS01433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9473-PA | 1..750 | 19..768 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:16:47 Download gff for
BS01433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-RC | 603..1360 | 19..776 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:37:05 Download gff for
BS01433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-RC | 603..1360 | 19..776 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:37:05 Download gff for
BS01433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9766441..9766727 | 19..305 | 100 | <- | Plus |
3R | 9766788..9766893 | 306..411 | 100 | <- | Plus |
3R | 9766948..9767122 | 412..586 | 100 | <- | Plus |
3R | 9767177..9767366 | 587..776 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:16:47 Download gff for
BS01433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5592163..5592449 | 19..305 | 100 | <- | Plus |
arm_3R | 5592510..5592615 | 306..411 | 100 | <- | Plus |
arm_3R | 5592670..5592844 | 412..586 | 100 | <- | Plus |
arm_3R | 5592899..5593088 | 587..776 | 98 | | Plus |
BS01433.5prime Sequence
782 bp (680 high quality bases) assembled on 2005-11-29
> BS01433.5prime
GAAGTTATCAGTCGACATGGCCAGCCGACAGATGACCAATGACCACCTGC
GCCTTTCCTGGCACGACACCCAGATGATGGCCACCCTCAGCCCGCAGACC
GTCATGGACTACTTCTGCCGCAAGTCGAATCCCTTCTATGATCACATGTG
CAACAACGAGACTGTTCGGATGCAGCGCCTTGGTCCCGAGCATCTGCACA
ACATGATCGGTCTGGAATACATACTGCTGCACGTGGCGGAGCCCATCCTG
TATGTAATCCGCAAGCAGCACCGTCATAATCCCTCGGAAGCCACGCCGAT
TGCCGATTACTACATCATTGGTGGCACCGTCTACAAGGCGCCAGATCTTG
CCAACGTCATCAATTCCCGCATTCTCAACACCGTGGTGAACCTGCAATCC
GCCTTCGAGGAGGCTAGTAGCTATGCCCGCTACCATCCCAACAAGGGCTA
CACGTGGGACTTCTCTTCCAATAAAGTTTTTTCAGATAGATCCAAGTCAG
ATAAGAAGGACGCCAACTCAGCGAAGGATGAGAACAGCGGCACACTGTTC
CAGAAGCAGCGTGTGGACATGCTGCTGGCAGAGCTTTTGCGTAAATTTCC
CCCACCAATACCGCCCATGCTGCAGAATCTCCAGCAGCCGCCACCAGCGG
GCGATGATCTGAACACAGCGAGAAATGCCTCCGAAATGAACAATGCCACA
GGACCGCTAGATATCAAAACCGAGGGTGTGGACATGAAGCCACCGCCCGA
AAAGAAGAGCAAGTGACGAAGCTTTCTAGACC
BS01433.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9473-PB | 750 | MED6-RB | 1..750 | 17..766 | 3750 | 100 | Plus |
CG9473-PA | 750 | MED6-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED6-RE | 1617 | CG9473-RE | 458..1207 | 17..766 | 3750 | 100 | Plus |
MED6-RD | 1814 | CG9473-RD | 655..1404 | 17..766 | 3750 | 100 | Plus |
MED6-RC | 1770 | CG9473-RC | 611..1360 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:14:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9766441..9766727 | 766..480 | 1435 | 100 | Minus |
3R | 32079331 | 3R | 9767177..9767358 | 198..17 | 910 | 100 | Minus |
3R | 32079331 | 3R | 9766948..9767122 | 373..199 | 875 | 100 | Minus |
3R | 32079331 | 3R | 9766788..9766893 | 479..374 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:14:30 has no hits.
BS01433.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:07:59 Download gff for
BS01433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-PA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:16:59 Download gff for
BS01433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9473-PA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:18:00 Download gff for
BS01433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-RC | 603..1360 | 9..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:30:20 Download gff for
BS01433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-RC | 603..1360 | 9..766 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:30:20 Download gff for
BS01433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9766441..9766727 | 480..766 | 100 | <- | Minus |
3R | 9766788..9766893 | 374..479 | 100 | <- | Minus |
3R | 9766948..9767122 | 199..373 | 100 | <- | Minus |
3R | 9767177..9767366 | 9..198 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:18:00 Download gff for
BS01433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5592163..5592449 | 480..766 | 100 | <- | Minus |
arm_3R | 5592510..5592615 | 374..479 | 100 | <- | Minus |
arm_3R | 5592670..5592844 | 199..373 | 100 | <- | Minus |
arm_3R | 5592899..5593088 | 9..198 | 98 | | Minus |
BS01433.complete Sequence
784 bp (784 high quality bases) assembled on 2005-06-23
> BS01433.complete
GAAGTTATCAGTCGACATGGCCAGCCGACAGATGACCAATGACCACCTGC
GCCTTTCCTGGCACGACACCCAGATGATGGCCACCCTCAGCCCGCAGACC
GTCATGGACTACTTCTGCCGCAAGTCGAATCCCTTCTATGATCACATGTG
CAACAACGAGACTGTTCGGATGCAGCGCCTTGGTCCCGAGCATCTGCACA
ACATGATCGGTCTGGAATACATACTGCTGCACGTGGCGGAGCCCATCCTG
TATGTAATCCGCAAGCAGCACCGTCATAATCCCTCGGAAGCCACGCCGAT
TGCCGATTACTACATCATTGGTGGCACCGTCTACAAGGCGCCAGATCTTG
CCAACGTCATCAATTCCCGCATTCTCAACACCGTGGTGAACCTGCAATCC
GCCTTCGAGGAGGCTAGTAGCTATGCCCGCTACCATCCCAACAAGGGCTA
CACGTGGGACTTCTCTTCCAATAAAGTTTTTTCAGATAGATCCAAGTCAG
ATAAGAAGGACGCCAACTCAGCGAAGGATGAGAACAGCGGCACACTGTTC
CAGAAGCAGCGTGTGGACATGCTGCTGGCAGAGCTTTTGCGTAAATTTCC
CCCACCAATACCGCCCATGCTGCAGAATCTCCAGCAGCCGCCACCAGCGG
GCGATGATCTGAACACAGCGAGAAATGCCTCCGAAATGAACAATGCCACA
GGACCGCTAGATATCAAAACCGAGGGTGTGGACATGAAGCCACCGCCCGA
AAAGAAGAGCAAGTGACGAAGCTTTCTAGACCAT
BS01433.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED6-RE | 750 | CG9473-PE | 1..750 | 17..766 | 3750 | 100 | Plus |
MED6-RD | 750 | CG9473-PD | 1..750 | 17..766 | 3750 | 100 | Plus |
MED6-RC | 750 | CG9473-PC | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED6-RE | 1617 | CG9473-RE | 458..1207 | 17..766 | 3750 | 100 | Plus |
MED6-RD | 1814 | CG9473-RD | 655..1404 | 17..766 | 3750 | 100 | Plus |
MED6-RC | 1770 | CG9473-RC | 611..1360 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:40:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9766441..9766727 | 766..480 | 1435 | 100 | Minus |
3R | 32079331 | 3R | 9767177..9767358 | 198..17 | 910 | 100 | Minus |
3R | 32079331 | 3R | 9766948..9767122 | 373..199 | 875 | 100 | Minus |
3R | 32079331 | 3R | 9766788..9766893 | 479..374 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:41:00 has no hits.
BS01433.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:09 Download gff for
BS01433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-RA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:05 Download gff for
BS01433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-RA | 628..1385 | 9..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:39 Download gff for
BS01433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-RC | 611..1360 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:09 Download gff for
BS01433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-RA | 628..1385 | 9..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:38 Download gff for
BS01433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED6-RC | 611..1360 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:38 Download gff for
BS01433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9766948..9767122 | 199..373 | 100 | <- | Minus |
3R | 9767177..9767358 | 17..198 | 100 | | Minus |
3R | 9766439..9766727 | 480..768 | 99 | <- | Minus |
3R | 9766788..9766893 | 374..479 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:39 Download gff for
BS01433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5592510..5592615 | 374..479 | 100 | <- | Minus |
arm_3R | 5592161..5592449 | 480..768 | 99 | <- | Minus |
arm_3R | 5592670..5592844 | 199..373 | 100 | <- | Minus |
arm_3R | 5592899..5593080 | 17..198 | 100 | | Minus |
BS01433.pep Sequence
Translation from 16 to 765
> BS01433.pep
MASRQMTNDHLRLSWHDTQMMATLSPQTVMDYFCRKSNPFYDHMCNNETV
RMQRLGPEHLHNMIGLEYILLHVAEPILYVIRKQHRHNPSEATPIADYYI
IGGTVYKAPDLANVINSRILNTVVNLQSAFEEASSYARYHPNKGYTWDFS
SNKVFSDRSKSDKKDANSAKDENSGTLFQKQRVDMLLAELLRKFPPPIPP
MLQNLQQPPPAGDDLNTARNASEMNNATGPLDIKTEGVDMKPPPEKKSK*
BS01433.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED6-PE | 249 | CG9473-PE | 1..249 | 1..249 | 1325 | 100 | Plus |
MED6-PD | 249 | CG9473-PD | 1..249 | 1..249 | 1325 | 100 | Plus |
MED6-PC | 249 | CG9473-PC | 1..249 | 1..249 | 1325 | 100 | Plus |
MED6-PA | 249 | CG9473-PA | 1..249 | 1..249 | 1325 | 100 | Plus |
MED6-PB | 249 | CG9473-PB | 1..249 | 1..249 | 1325 | 100 | Plus |