Clone BS01438 Report

Search the DGRC for BS01438

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:14
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptAdf1-RA
Protein status:BS01438.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01438.3prime Sequence

753 bp (752 high quality bases) assembled on 2005-11-29

> BS01438.3prime
ATGGTCTAGAAAGCTTCGTTAGTACTTGTTGTGCTGTGCCAGAAGCTGCA
TGTCCGTCAGATACTTGATGATGTGCACCTTCGCCTCTGCCTTTTGTCGC
ACGCCCAGCGTGTTGAGCATGTCCGTGACTACCATGCCGAACGACTGGTC
CTCGGCGCTGACCGCCTGCGAGACGTTGTTTTGGAAAATCTTGATGGTGT
TGAGCATGTTGTCGCTGTGCTCCTCCTCACTGCGCTCTCGCTTGAGCGGC
GGCTCGTAGAAGTATGGCTTTTGGTCCTTGCCCACGGCAGTGGCCAGCTG
TGCATCGCTGGTGACAGTAATTTCATGCGGATGGGTCAGTGCCTGGGCCG
AGGTTGTGGCGCTGCCGTTGAAGGGCTGTGCAAATATATCCACGACGGTC
TGTTGCTGCGCCTGCTGCTGCTGCGACGGATCGGCCACCTGGTTGGCGCT
TTGACTCCCATTGGCGCACTTGCCGAGCAGCGACTCTCGATACTGGCGGA
TGGAGTCAACCAGGAATTGCATCTGCTTGAAGTAACGCCAGCGCGATTCC
TGACATAGTTTCATCTCGCGGGCGAACTTGTCGCGCAGACTCTTCCAGCG
CTTCGTACATTTTTGTTCAGGCACACCGAGCGTTTCGGCGATTTGTTTCC
AGGTCTGGGCCTTGCGCACAAAGTGCTTGTAATTGTAGTGCGACCTGTCG
TATATCACTGGGTTCAGCTTGACAGCCTCGATGAGATTGAGATCAAACTG
CTG

BS01438.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15845-PA 762 Adf1-RA 28..762 753..19 3675 100 Minus
CG15845-PB 762 Adf1-RB 28..762 753..19 3675 100 Minus
CG15845-PC 789 Adf1-RC 55..789 753..19 3675 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
Adf1-RE 1668 CG15845-RE 226..961 753..18 3680 100 Minus
Adf1-RC 1675 CG15845-RC 233..968 753..18 3680 100 Minus
Adf1-RB 1795 CG15845-RB 353..1088 753..18 3680 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6667072..6667378 324..18 1535 100 Minus
2R 25286936 2R 6666719..6667013 618..324 1475 100 Minus
2R 25286936 2R 6662622..6662757 753..618 680 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:46:06 has no hits.

BS01438.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:06 Download gff for BS01438.3prime
Subject Subject Range Query Range Percent Splice Strand
Adf1-PB 28..762 19..753 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:08 Download gff for BS01438.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15845-PC 55..789 19..753 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:05:01 Download gff for BS01438.3prime
Subject Subject Range Query Range Percent Splice Strand
Adf1-RB 353..1088 18..753 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:17:39 Download gff for BS01438.3prime
Subject Subject Range Query Range Percent Splice Strand
Adf1-RB 353..1088 18..753 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:17:39 Download gff for BS01438.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6662622..6662757 618..753 100 -> Minus
2R 6666720..6667013 324..617 100 -> Minus
2R 6667073..6667378 18..323 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:05:01 Download gff for BS01438.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2550127..2550262 618..753 100 -> Minus
arm_2R 2554225..2554518 324..617 100 -> Minus
arm_2R 2554578..2554883 18..323 100   Minus

BS01438.5prime Sequence

794 bp (793 high quality bases) assembled on 2005-11-29

> BS01438.5prime
GAAGTTATCAGTCGACATGGACAAGCTGGATGCCAATCTTGAGCAGCAGT
TTGATCTCAATCTCATCGAGGCTGTCAAGCTGAACCCAGTGATATACGAC
AGGTCGCACTACAATTACAAGCACTTTGTGCGCAAGGCCCAGACCTGGAA
ACAAATCGCCGAAACGCTCGGTGTGCCTGAACAAAAATGTACGAAGCGCT
GGAAGAGTCTGCGCGACAAGTTCGCCCGCGAGATGAAACTATGTCAGGAA
TCGCGCTGGCGTTACTTCAAGCAGATGCAATTCCTGGTTGACTCCATCCG
CCAGTATCGAGAGTCGCTGCTCGGCAAGTGCGCCAATGGGAGTCAAAGCG
CCAACCAGGTGGCCGATCCGTCGCAGCAGCAGCAGGCGCAGCAACAGACC
GTCGTGGATATATTTGCACAGCCCTTCAACGGCAGCGCCACAACCTCGGC
CCAGGCACTGACCCATCCGCATGAAATTACTGTCACCAGCGATGCACAGC
TGGCCACTGCCGTGGGCAAGGACCAAAAGCCATACTTCTACGAGCCGCCG
CTCAAGCGAGAGCGCAGTGAGGAGGAGCACAGCGACAACATGCTCAACAC
CATCAAGATTTTCCAAAACAACGTCTCGCAGGCGGTCAGCGCCGAGGACC
AGTCGTTCGGCATGGTAGTCACGGACATGCTCAACACGCTGGGCGTGCGA
CAAAAGGCAGAGGCGAAGGTGCACATCATCAAGTATCTGACGGACATGCA
GCTTCTGGCACAGCACAACAAGTACTAACGAAGCTTTCTAGACC

BS01438.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG15845-PA 762 Adf1-RA 1..762 17..778 3810 100 Plus
CG15845-PB 762 Adf1-RB 1..762 17..778 3810 100 Plus
CG15845-PC 789 Adf1-RC 28..789 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
Adf1-RE 1668 CG15845-RE 199..961 17..779 3815 100 Plus
Adf1-RC 1675 CG15845-RC 206..968 17..779 3815 100 Plus
Adf1-RB 1795 CG15845-RB 326..1088 17..779 3815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6667072..6667378 473..779 1535 100 Plus
2R 25286936 2R 6666719..6667013 179..473 1475 100 Plus
2R 25286936 2R 6662595..6662757 17..179 815 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:06:18 has no hits.

BS01438.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:07 Download gff for BS01438.5prime
Subject Subject Range Query Range Percent Splice Strand
Adf1-PB 1..762 17..778 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:10 Download gff for BS01438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15845-PC 21..789 9..778 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:38 Download gff for BS01438.5prime
Subject Subject Range Query Range Percent Splice Strand
Adf1-RB 319..1088 9..779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:35:29 Download gff for BS01438.5prime
Subject Subject Range Query Range Percent Splice Strand
Adf1-RB 319..1088 9..779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:35:29 Download gff for BS01438.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6667073..6667378 474..779 100   Plus
2R 6662588..6662757 9..179 98 -> Plus
2R 6666720..6667013 180..473 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:38 Download gff for BS01438.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2550093..2550262 9..179 98 -> Plus
arm_2R 2554225..2554518 180..473 100 -> Plus
arm_2R 2554578..2554883 474..779 100   Plus

BS01438.complete Sequence

796 bp (796 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634610

> BS01438.complete
GAAGTTATCAGTCGACATGGACAAGCTGGATGCCAATCTTGAGCAGCAGT
TTGATCTCAATCTCATCGAGGCTGTCAAGCTGAACCCAGTGATATACGAC
AGGTCGCACTACAATTACAAGCACTTTGTGCGCAAGGCCCAGACCTGGAA
ACAAATCGCCGAAACGCTCGGTGTGCCTGAACAAAAATGTACGAAGCGCT
GGAAGAGTCTGCGCGACAAGTTCGCCCGCGAGATGAAACTATGTCAGGAA
TCGCGCTGGCGTTACTTCAAGCAGATGCAATTCCTGGTTGACTCCATCCG
CCAGTATCGAGAGTCGCTGCTCGGCAAGTGCGCCAATGGGAGTCAAAGCG
CCAACCAGGTGGCCGATCCGTCGCAGCAGCAGCAGGCGCAGCAACAGACC
GTCGTGGATATATTTGCACAGCCCTTCAACGGCAGCGCCACAACCTCGGC
CCAGGCACTGACCCATCCGCATGAAATTACTGTCACCAGCGATGCACAGC
TGGCCACTGCCGTGGGCAAGGACCAAAAGCCATACTTCTACGAGCCGCCG
CTCAAGCGAGAGCGCAGTGAGGAGGAGCACAGCGACAACATGCTCAACAC
CATCAAGATTTTCCAAAACAACGTCTCGCAGGCGGTCAGCGCCGAGGACC
AGTCGTTCGGCATGGTAGTCACGGACATGCTCAACACGCTGGGCGTGCGA
CAAAAGGCAGAGGCGAAGGTGCACATCATCAAGTATCTGACGGACATGCA
GCTTCTGGCACAGCACAACAAGTACTAACGAAGCTTTCTAGACCAT

BS01438.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
Adf1-RE 825 CG15845-PE 1..763 17..779 3815 100 Plus
Adf1-RC 789 CG15845-PC 28..789 17..778 3810 100 Plus
Adf1-RB 762 CG15845-PB 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
Adf1-RE 1668 CG15845-RE 199..961 17..779 3815 100 Plus
Adf1-RC 1675 CG15845-RC 206..968 17..779 3815 100 Plus
Adf1-RB 1795 CG15845-RB 326..1088 17..779 3815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6667072..6667378 473..779 1535 100 Plus
2R 25286936 2R 6666719..6667013 179..473 1475 100 Plus
2R 25286936 2R 6662595..6662757 17..179 815 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:23:18 has no hits.

BS01438.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:10 Download gff for BS01438.complete
Subject Subject Range Query Range Percent Splice Strand
Adf1-RC 21..789 9..778 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:06 Download gff for BS01438.complete
Subject Subject Range Query Range Percent Splice Strand
Adf1-RC 200..969 9..779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:38 Download gff for BS01438.complete
Subject Subject Range Query Range Percent Splice Strand
Adf1-RB 326..1088 17..780 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:11 Download gff for BS01438.complete
Subject Subject Range Query Range Percent Splice Strand
Adf1-RC 200..969 9..779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:59 Download gff for BS01438.complete
Subject Subject Range Query Range Percent Splice Strand
Adf1-RB 326..1088 17..780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:59 Download gff for BS01438.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6662595..6662757 17..179 100 -> Plus
2R 6666720..6667013 180..473 100 -> Plus
2R 6667073..6667378 474..780 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:38 Download gff for BS01438.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2550100..2550262 17..179 100 -> Plus
arm_2R 2554225..2554518 180..473 100 -> Plus
arm_2R 2554578..2554883 474..780 99   Plus

BS01438.pep Sequence

Translation from 16 to 777

> BS01438.pep
MDKLDANLEQQFDLNLIEAVKLNPVIYDRSHYNYKHFVRKAQTWKQIAET
LGVPEQKCTKRWKSLRDKFAREMKLCQESRWRYFKQMQFLVDSIRQYRES
LLGKCANGSQSANQVADPSQQQQAQQQTVVDIFAQPFNGSATTSAQALTH
PHEITVTSDAQLATAVGKDQKPYFYEPPLKRERSEEEHSDNMLNTIKIFQ
NNVSQAVSAEDQSFGMVVTDMLNTLGVRQKAEAKVHIIKYLTDMQLLAQH
NKY*

BS01438.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
Adf1-PB 253 CG15845-PB 1..253 1..253 1311 100 Plus
Adf1-PA 253 CG15845-PA 1..253 1..253 1311 100 Plus
Adf1-PC 262 CG15845-PC 10..262 1..253 1311 100 Plus
Adf1-PE 274 CG15845-PE 1..253 1..253 1311 100 Plus
CG10949-PB 459 CG10949-PB 131..391 2..236 170 25.6 Plus