Clone Sequence Records
BS01438.3prime Sequence
753 bp (752 high quality bases) assembled on 2005-11-29
> BS01438.3prime
ATGGTCTAGAAAGCTTCGTTAGTACTTGTTGTGCTGTGCCAGAAGCTGCA
TGTCCGTCAGATACTTGATGATGTGCACCTTCGCCTCTGCCTTTTGTCGC
ACGCCCAGCGTGTTGAGCATGTCCGTGACTACCATGCCGAACGACTGGTC
CTCGGCGCTGACCGCCTGCGAGACGTTGTTTTGGAAAATCTTGATGGTGT
TGAGCATGTTGTCGCTGTGCTCCTCCTCACTGCGCTCTCGCTTGAGCGGC
GGCTCGTAGAAGTATGGCTTTTGGTCCTTGCCCACGGCAGTGGCCAGCTG
TGCATCGCTGGTGACAGTAATTTCATGCGGATGGGTCAGTGCCTGGGCCG
AGGTTGTGGCGCTGCCGTTGAAGGGCTGTGCAAATATATCCACGACGGTC
TGTTGCTGCGCCTGCTGCTGCTGCGACGGATCGGCCACCTGGTTGGCGCT
TTGACTCCCATTGGCGCACTTGCCGAGCAGCGACTCTCGATACTGGCGGA
TGGAGTCAACCAGGAATTGCATCTGCTTGAAGTAACGCCAGCGCGATTCC
TGACATAGTTTCATCTCGCGGGCGAACTTGTCGCGCAGACTCTTCCAGCG
CTTCGTACATTTTTGTTCAGGCACACCGAGCGTTTCGGCGATTTGTTTCC
AGGTCTGGGCCTTGCGCACAAAGTGCTTGTAATTGTAGTGCGACCTGTCG
TATATCACTGGGTTCAGCTTGACAGCCTCGATGAGATTGAGATCAAACTG
CTG
BS01438.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15845-PA | 762 | Adf1-RA | 28..762 | 753..19 | 3675 | 100 | Minus |
CG15845-PB | 762 | Adf1-RB | 28..762 | 753..19 | 3675 | 100 | Minus |
CG15845-PC | 789 | Adf1-RC | 55..789 | 753..19 | 3675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:46:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adf1-RE | 1668 | CG15845-RE | 226..961 | 753..18 | 3680 | 100 | Minus |
Adf1-RC | 1675 | CG15845-RC | 233..968 | 753..18 | 3680 | 100 | Minus |
Adf1-RB | 1795 | CG15845-RB | 353..1088 | 753..18 | 3680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6667072..6667378 | 324..18 | 1535 | 100 | Minus |
2R | 25286936 | 2R | 6666719..6667013 | 618..324 | 1475 | 100 | Minus |
2R | 25286936 | 2R | 6662622..6662757 | 753..618 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:46:06 has no hits.
BS01438.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:06 Download gff for
BS01438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-PB | 28..762 | 19..753 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:08 Download gff for
BS01438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15845-PC | 55..789 | 19..753 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:05:01 Download gff for
BS01438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RB | 353..1088 | 18..753 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:17:39 Download gff for
BS01438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RB | 353..1088 | 18..753 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:17:39 Download gff for
BS01438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6662622..6662757 | 618..753 | 100 | -> | Minus |
2R | 6666720..6667013 | 324..617 | 100 | -> | Minus |
2R | 6667073..6667378 | 18..323 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:05:01 Download gff for
BS01438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2550127..2550262 | 618..753 | 100 | -> | Minus |
arm_2R | 2554225..2554518 | 324..617 | 100 | -> | Minus |
arm_2R | 2554578..2554883 | 18..323 | 100 | | Minus |
BS01438.5prime Sequence
794 bp (793 high quality bases) assembled on 2005-11-29
> BS01438.5prime
GAAGTTATCAGTCGACATGGACAAGCTGGATGCCAATCTTGAGCAGCAGT
TTGATCTCAATCTCATCGAGGCTGTCAAGCTGAACCCAGTGATATACGAC
AGGTCGCACTACAATTACAAGCACTTTGTGCGCAAGGCCCAGACCTGGAA
ACAAATCGCCGAAACGCTCGGTGTGCCTGAACAAAAATGTACGAAGCGCT
GGAAGAGTCTGCGCGACAAGTTCGCCCGCGAGATGAAACTATGTCAGGAA
TCGCGCTGGCGTTACTTCAAGCAGATGCAATTCCTGGTTGACTCCATCCG
CCAGTATCGAGAGTCGCTGCTCGGCAAGTGCGCCAATGGGAGTCAAAGCG
CCAACCAGGTGGCCGATCCGTCGCAGCAGCAGCAGGCGCAGCAACAGACC
GTCGTGGATATATTTGCACAGCCCTTCAACGGCAGCGCCACAACCTCGGC
CCAGGCACTGACCCATCCGCATGAAATTACTGTCACCAGCGATGCACAGC
TGGCCACTGCCGTGGGCAAGGACCAAAAGCCATACTTCTACGAGCCGCCG
CTCAAGCGAGAGCGCAGTGAGGAGGAGCACAGCGACAACATGCTCAACAC
CATCAAGATTTTCCAAAACAACGTCTCGCAGGCGGTCAGCGCCGAGGACC
AGTCGTTCGGCATGGTAGTCACGGACATGCTCAACACGCTGGGCGTGCGA
CAAAAGGCAGAGGCGAAGGTGCACATCATCAAGTATCTGACGGACATGCA
GCTTCTGGCACAGCACAACAAGTACTAACGAAGCTTTCTAGACC
BS01438.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15845-PA | 762 | Adf1-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
CG15845-PB | 762 | Adf1-RB | 1..762 | 17..778 | 3810 | 100 | Plus |
CG15845-PC | 789 | Adf1-RC | 28..789 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:06:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adf1-RE | 1668 | CG15845-RE | 199..961 | 17..779 | 3815 | 100 | Plus |
Adf1-RC | 1675 | CG15845-RC | 206..968 | 17..779 | 3815 | 100 | Plus |
Adf1-RB | 1795 | CG15845-RB | 326..1088 | 17..779 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6667072..6667378 | 473..779 | 1535 | 100 | Plus |
2R | 25286936 | 2R | 6666719..6667013 | 179..473 | 1475 | 100 | Plus |
2R | 25286936 | 2R | 6662595..6662757 | 17..179 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:06:18 has no hits.
BS01438.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:07 Download gff for
BS01438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-PB | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:10 Download gff for
BS01438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15845-PC | 21..789 | 9..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:40:38 Download gff for
BS01438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RB | 319..1088 | 9..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:35:29 Download gff for
BS01438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RB | 319..1088 | 9..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:35:29 Download gff for
BS01438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6667073..6667378 | 474..779 | 100 | | Plus |
2R | 6662588..6662757 | 9..179 | 98 | -> | Plus |
2R | 6666720..6667013 | 180..473 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:40:38 Download gff for
BS01438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2550093..2550262 | 9..179 | 98 | -> | Plus |
arm_2R | 2554225..2554518 | 180..473 | 100 | -> | Plus |
arm_2R | 2554578..2554883 | 474..779 | 100 | | Plus |
BS01438.complete Sequence
796 bp (796 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634610
> BS01438.complete
GAAGTTATCAGTCGACATGGACAAGCTGGATGCCAATCTTGAGCAGCAGT
TTGATCTCAATCTCATCGAGGCTGTCAAGCTGAACCCAGTGATATACGAC
AGGTCGCACTACAATTACAAGCACTTTGTGCGCAAGGCCCAGACCTGGAA
ACAAATCGCCGAAACGCTCGGTGTGCCTGAACAAAAATGTACGAAGCGCT
GGAAGAGTCTGCGCGACAAGTTCGCCCGCGAGATGAAACTATGTCAGGAA
TCGCGCTGGCGTTACTTCAAGCAGATGCAATTCCTGGTTGACTCCATCCG
CCAGTATCGAGAGTCGCTGCTCGGCAAGTGCGCCAATGGGAGTCAAAGCG
CCAACCAGGTGGCCGATCCGTCGCAGCAGCAGCAGGCGCAGCAACAGACC
GTCGTGGATATATTTGCACAGCCCTTCAACGGCAGCGCCACAACCTCGGC
CCAGGCACTGACCCATCCGCATGAAATTACTGTCACCAGCGATGCACAGC
TGGCCACTGCCGTGGGCAAGGACCAAAAGCCATACTTCTACGAGCCGCCG
CTCAAGCGAGAGCGCAGTGAGGAGGAGCACAGCGACAACATGCTCAACAC
CATCAAGATTTTCCAAAACAACGTCTCGCAGGCGGTCAGCGCCGAGGACC
AGTCGTTCGGCATGGTAGTCACGGACATGCTCAACACGCTGGGCGTGCGA
CAAAAGGCAGAGGCGAAGGTGCACATCATCAAGTATCTGACGGACATGCA
GCTTCTGGCACAGCACAACAAGTACTAACGAAGCTTTCTAGACCAT
BS01438.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adf1-RE | 825 | CG15845-PE | 1..763 | 17..779 | 3815 | 100 | Plus |
Adf1-RC | 789 | CG15845-PC | 28..789 | 17..778 | 3810 | 100 | Plus |
Adf1-RB | 762 | CG15845-PB | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adf1-RE | 1668 | CG15845-RE | 199..961 | 17..779 | 3815 | 100 | Plus |
Adf1-RC | 1675 | CG15845-RC | 206..968 | 17..779 | 3815 | 100 | Plus |
Adf1-RB | 1795 | CG15845-RB | 326..1088 | 17..779 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6667072..6667378 | 473..779 | 1535 | 100 | Plus |
2R | 25286936 | 2R | 6666719..6667013 | 179..473 | 1475 | 100 | Plus |
2R | 25286936 | 2R | 6662595..6662757 | 17..179 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:23:18 has no hits.
BS01438.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:10 Download gff for
BS01438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RC | 21..789 | 9..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:06 Download gff for
BS01438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RC | 200..969 | 9..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:38 Download gff for
BS01438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RB | 326..1088 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:11 Download gff for
BS01438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RC | 200..969 | 9..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:59 Download gff for
BS01438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adf1-RB | 326..1088 | 17..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:59 Download gff for
BS01438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6662595..6662757 | 17..179 | 100 | -> | Plus |
2R | 6666720..6667013 | 180..473 | 100 | -> | Plus |
2R | 6667073..6667378 | 474..780 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:38 Download gff for
BS01438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2550100..2550262 | 17..179 | 100 | -> | Plus |
arm_2R | 2554225..2554518 | 180..473 | 100 | -> | Plus |
arm_2R | 2554578..2554883 | 474..780 | 99 | | Plus |
BS01438.pep Sequence
Translation from 16 to 777
> BS01438.pep
MDKLDANLEQQFDLNLIEAVKLNPVIYDRSHYNYKHFVRKAQTWKQIAET
LGVPEQKCTKRWKSLRDKFAREMKLCQESRWRYFKQMQFLVDSIRQYRES
LLGKCANGSQSANQVADPSQQQQAQQQTVVDIFAQPFNGSATTSAQALTH
PHEITVTSDAQLATAVGKDQKPYFYEPPLKRERSEEEHSDNMLNTIKIFQ
NNVSQAVSAEDQSFGMVVTDMLNTLGVRQKAEAKVHIIKYLTDMQLLAQH
NKY*
BS01438.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:24:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adf1-PB | 253 | CG15845-PB | 1..253 | 1..253 | 1311 | 100 | Plus |
Adf1-PA | 253 | CG15845-PA | 1..253 | 1..253 | 1311 | 100 | Plus |
Adf1-PC | 262 | CG15845-PC | 10..262 | 1..253 | 1311 | 100 | Plus |
Adf1-PE | 274 | CG15845-PE | 1..253 | 1..253 | 1311 | 100 | Plus |
CG10949-PB | 459 | CG10949-PB | 131..391 | 2..236 | 170 | 25.6 | Plus |