Clone Sequence Records
BS01439.complete Sequence
808 bp assembled on 2009-07-27
GenBank Submission: KX796016
> BS01439.complete
GAAGTTATCAGTCGACATGACGAGCATTTGCAGCAGCAAATTCCAGCAGC
AGCATTACCAGCTGACCAACAGTAACATTTTCTTGCTGCAACATCAGCAT
CACCATCAAACGCAGCAGCACCAGTTGATTGCTCCGAAAATACCTTTGGG
TACCAGCCAACTGCAGAATATGCAGCAGAGTCAACAGTCCAATGTTGGAC
CCATGTTGTCCTCCCAGAAGAAGAAGTTCAACTACAATAACATGCCCTAT
GGCGAGCAATTGCCATCGGTAGCCAGACGAAATGCCCGTGAACGCAATCG
CGTGAAGCAGGTGAACAATGGATTCGTCAATCTCCGCCAGCATTTGCCTC
AAACTGTGGTAAACTCGCTGTCCAATGGAGGACGTGGTAGCAGCAAGAAG
TTATCCAAGGTGGACACACTGCGAATCGCCGTTGAATATATTCGAGGACT
ACAGGACATGCTTGATGATGGCACTGCTTCATCAACTCGTCACATCTACA
ATTCCGCCGATGAAAGTAGCAACGATGGCAGCAGCTATAACGATTACAAC
GATAGTTTGGACAGTTCGCAACAGTTCTTGACGGGAGCCACCCAGTCTGC
CCAATCCCACTCGTACCACTCCGCCTCGCCCACGCCGTCGTACTCCGGAT
CCGAGATTTCCGGAGGTGGCTATATCAAACAGGAACTACAAGAGCAGGAC
CTCAAATTCGACTCCTTTGATAGCTTCAGTGACGAGCAGCCAGATGACGA
GGAGCTACTCGATTATATTTCATCTTGGCAAGAGCAGTGACGAAGCTTTC
TAGACCAT
BS01439.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)sc-RA | 774 | CG3839-PA | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)sc-RA | 1097 | CG3839-RA | 75..849 | 16..790 | 3875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 409795..410569 | 16..790 | 3875 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:51:58 has no hits.
BS01439.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-27 17:16:44 Download gff for
BS01439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)sc-RA | 74..849 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:13 Download gff for
BS01439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)sc-RA | 74..849 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:44 Download gff for
BS01439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)sc-RA | 74..849 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:16 Download gff for
BS01439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)sc-RA | 76..851 | 17..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:16 Download gff for
BS01439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 409796..410571 | 17..792 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:13 Download gff for
BS01439.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 303829..304604 | 17..792 | 99 | | Plus |
BS01439.3prime Sequence
806 bp (800 high quality bases) assembled on 2005-11-29
> BS01439.3prime
ATGGTCTAGAAAGCTTCGTCACTGCTCTTGCCAAGATGAAATATAATCGA
GTAGCTCCTCGTCATCTGGCTGCTCGTCACTGAAGCTATCAAAGGAGTCG
AATTTGAGGTCCTGCTCTTGTAGTTCCTGTTTGATATAGCCACCTCCGGA
AATCTCGGATCCGGAGTACGACGGCGTGGGCGAGGCGGAGTGGTACGAGT
GGGATTGGGCAGACTGGGTGGCTCCCGTCAAGAACTGTTGCGAACTGTCC
AAACTATCGTTGTAATCGTTATAGCTGCTGCCATCGTTGCTACTTTCATC
GGCGGAATTGTAGATGTGACGAGTTGATGAAGCAGTGCCATCATCAAGCA
TGTCCTGTAGTCCTCGAATATATTCAACGGCGATTCGCAGTGTGTCCACC
TTGGATAACTTCTTGCTGCTACCACGTCCTCCATTGGACAGCGAGTTTAC
CACAGTTTGAGGCAAATGCTGGCGGAGATTGACGAATCCATTGTTCACCT
GCTTCACGCGATTGCGTTCACGGGCATTTCGTCTGGCTACCGATGGCAAT
TGCTCGCCATAGGGCATGTTATTGTAGTTGAACTTCTTCTTCTGGGAGGA
CAACATGGGTCCAACATTGGACTGTTGACTCTGCTGCATATTCTGCAGTT
GGCTGGTACCCAAAGGTATTTTCGGAGCAATCAACTGGTGCTGCTGCGTT
TGATGGTGATGCTGATGTTGCAGCAAGAAAATGTTACTGTTGGTCAGCTG
GTAATGCTGCTGCTGGAATTTGCTGCTGCAAATGCTCGTCATGTCGACTG
ATAACT
BS01439.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3839-PA | 774 | l(1)sc-RA | 1..774 | 792..19 | 3870 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)sc-RA | 1097 | CG3839-RA | 75..849 | 793..19 | 3875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:54:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 409795..410569 | 793..19 | 3875 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:54:58 has no hits.
BS01439.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:08 Download gff for
BS01439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3839-PA | 1..774 | 19..792 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:11 Download gff for
BS01439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3839-PA | 1..774 | 19..792 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:05:45 Download gff for
BS01439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)sc-RA | 73..856 | 11..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:28:47 Download gff for
BS01439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)sc-RA | 75..858 | 11..793 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:28:47 Download gff for
BS01439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 409795..410578 | 11..793 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:05:45 Download gff for
BS01439.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 303828..304611 | 11..793 | 99 | | Minus |
BS01439.5prime Sequence
806 bp (700 high quality bases) assembled on 2005-11-29
> BS01439.5prime
GAAGTTATCAGTCGACATGACGAGCATTTGCAGCAGCAAATTCCAGCAGC
AGCATTACCAGCTGACCAACAGTAACATTTTCTTGCTGCAACATCAGCAT
CACCATCAAACGCAGCAGCACCAGTTGATTGCTCCGAAAATACCTTTGGG
TACCAGCCAACTGCAGAATATGCAGCAGAGTCAACAGTCCAATGTTGGAC
CCATGTTGTCCTCCCAGAAGAAGAAGTTCAACTACAATAACATGCCCTAT
GGCGAGCAATTGCCATCGGTAGCCAGACGAAATGCCCGTGAACGCAATCG
CGTGAAGCAGGTGAACAATGGATTCGTCAATCTCCGCCAGCATTTGCCTC
AAACTGTGGTAAACTCGCTGTCCAATGGAGGACGTGGTAGCAGCAAGAAG
TTATCCAAGGTGGACACACTGCGAATCGCCGTTGAATATATTCGAGGACT
ACAGGACATGCTTGATGATGGCACTGCTTCATCAACTCGTCACATCTACA
ATTCCGCCGATGAAAGTAGCAACGATGGCAGCAGCTATAACGATTACAAC
GATAGTTTGGACAGTTCGCAACAGTTCTTGACGGGAGCCACCCAGTCTGC
CCAATCCCACTCGTACCACTCCGCCTCGCCCACGCCGTCGTACTCCGGAT
CCGAGATTTCCGGAGGTGGCTATATCAAACAGGAACTACAAGAGCAGGAC
CTCAAATTCGACTCCTTTGATAGCTTCAGTGACGAGCAGCCAGATGACGA
GGAGCTACTCGATTATATTTCATCTTGGCAAGAGCAGTGACGAAGCTTTC
TAGACC
BS01439.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3839-PA | 774 | l(1)sc-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:41:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)sc-RA | 1097 | CG3839-RA | 75..849 | 16..790 | 3875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:41:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 409795..410569 | 16..790 | 3875 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:41:17 has no hits.
BS01439.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:09 Download gff for
BS01439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3839-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:12 Download gff for
BS01439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3839-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:51:29 Download gff for
BS01439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)sc-RA | 73..856 | 16..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:17 Download gff for
BS01439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)sc-RA | 75..858 | 16..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:17 Download gff for
BS01439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 409795..410578 | 16..798 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:51:29 Download gff for
BS01439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 303828..304611 | 16..798 | 99 | | Plus |
BS01439.pep Sequence
Translation from 16 to 789
> BS01439.pep
MTSICSSKFQQQHYQLTNSNIFLLQHQHHHQTQQHQLIAPKIPLGTSQLQ
NMQQSQQSNVGPMLSSQKKKFNYNNMPYGEQLPSVARRNARERNRVKQVN
NGFVNLRQHLPQTVVNSLSNGGRGSSKKLSKVDTLRIAVEYIRGLQDMLD
DGTASSTRHIYNSADESSNDGSSYNDYNDSLDSSQQFLTGATQSAQSHSY
HSASPTPSYSGSEISGGGYIKQELQEQDLKFDSFDSFSDEQPDDEELLDY
ISSWQEQ*
BS01439.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:50:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)sc-PA | 257 | CG3839-PA | 1..257 | 1..257 | 1334 | 100 | Plus |
| sc-PA | 345 | CG3827-PA | 92..345 | 77..257 | 309 | 38.2 | Plus |
| ac-PA | 201 | CG3796-PA | 24..199 | 83..256 | 291 | 41.7 | Plus |
| ase-PA | 486 | CG3258-PA | 96..247 | 25..167 | 222 | 40.1 | Plus |
