Clone Sequence Records
BS01446.3prime Sequence
845 bp (745 high quality bases) assembled on 2005-11-29
> BS01446.3prime
ATGGTCTAGAAAGCTTCGTTACACATCTTGGAATTTCGATAGACGTGCAC
GCAAGTCCATGTTCTCCTGTTTCAACTGCTCCACCTCCTGATGTAATGTT
GCATTTTCCTTCTCCAAGTAGCGTGCCCGCATCGCAATCTGGTTCTCCTT
CTGGCGCCGGGCATCGCGGGATCGCTTGGCGGCAATGTTGTTCTTCCGGC
GACGTGCCCAGTACTTGTCGTCCTTGAGCTCATCTGGAACGAATTGCTTG
CGTGACTTTTTGATCATCGGCTGCGGCTTGAGCTCCTCGTCGGAGAAGGC
TCTGGTTCGCGGATCAAAGTCACGGCCCGAGGAGGCGAACGAAAATGTTG
ACTCGGCCGGCGATGGCGGATTTAGCGTGTCCGGACTGATGCAGTCGGAT
GGCGAGGGCGACCGCTCTCGCTTTGTGGTTATGTGGCCAAGACCAAGAGA
CAGACCCGCTGCGTGACCCAGGGAATCGGACCGGTGGCCCAGGCCACTGG
AGTGGCCCAGATGCGTGCCGGGCAGGCCATCAGGTATGTTGTTCTCCGAC
AGGAATTCGTCTAGGTCGGCATATTGTGTTACCTTGAGGTCGGCATCATA
GGGCAGGGTCTTGTCCCACAGATTTGGGCCGAGAAACGCTGTTTGCGCCT
CAACATTCCAGATGTCGCCCTCCTCCTTGTATTTGTCATCTGGGCAGATG
ATCTCTTTGCTATTCGATGTGGATTTGCCATTAATGCCGCTGATCAGTGG
GTAATTACCATCACGGCCGCCAATTAAGTTTTTTAAACCAGTTTCGATCA
GTGTTGGGGACGATCGCTCCCTGTCGCTCATGTCGACTGATAACT
BS01446.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17888-PB | 813 | Pdp1-RB | 1..813 | 831..19 | 4065 | 100 | Minus |
CG17888-PA | 813 | Pdp1-RA | 1..813 | 831..19 | 4065 | 100 | Minus |
CG17888-PG | 855 | Pdp1-RG | 145..855 | 729..19 | 3555 | 100 | Minus |
CG17888-PE | 855 | Pdp1-RE | 145..855 | 729..19 | 3555 | 100 | Minus |
CG17888-PF | 753 | Pdp1-RF | 43..753 | 729..19 | 3555 | 100 | Minus |
CG17888-PD | 1944 | Pdp1-RD | 1234..1944 | 729..19 | 3555 | 100 | Minus |
CG17888-PH | 1062 | Pdp1-RH | 352..1062 | 729..19 | 3555 | 100 | Minus |
CG17888-PC | 1713 | Pdp1-RC | 1003..1713 | 729..19 | 3555 | 100 | Minus |
CG17888-PG | 855 | Pdp1-RG | 1..106 | 831..726 | 530 | 100 | Minus |
CG17888-PE | 855 | Pdp1-RE | 1..106 | 831..726 | 530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdp1-RK | 6855 | CG17888-RK | 1175..1987 | 831..19 | 4065 | 100 | Minus |
Pdp1-RP | 6398 | CG17888-RP | 1175..1987 | 831..19 | 4065 | 100 | Minus |
Pdp1-RB | 5065 | CG17888-RB | 2264..3076 | 831..19 | 4065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7816484..7816725 | 106..347 | 1210 | 100 | Plus |
3L | 28110227 | 3L | 7817437..7817662 | 348..573 | 1130 | 100 | Plus |
3L | 28110227 | 3L | 7818069..7818224 | 574..729 | 780 | 100 | Plus |
3L | 28110227 | 3L | 7853182..7853285 | 728..831 | 520 | 100 | Plus |
3L | 28110227 | 3L | 7816326..7816412 | 19..105 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:37:37 has no hits.
BS01446.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:19 Download gff for
BS01446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-PB | 1..813 | 19..831 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:22 Download gff for
BS01446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17888-PA | 1..813 | 19..831 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:27:36 Download gff for
BS01446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 2264..3079 | 16..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:21 Download gff for
BS01446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 2264..3079 | 16..831 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:21 Download gff for
BS01446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7816323..7816412 | 16..105 | 98 | <- | Plus |
3L | 7816484..7816725 | 106..347 | 100 | <- | Plus |
3L | 7817437..7817662 | 348..573 | 100 | <- | Plus |
3L | 7818069..7818223 | 574..728 | 100 | <- | Plus |
3L | 7853183..7853285 | 729..831 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:27:36 Download gff for
BS01446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7809423..7809512 | 16..105 | 98 | <- | Plus |
arm_3L | 7809584..7809825 | 106..347 | 100 | <- | Plus |
arm_3L | 7810537..7810762 | 348..573 | 100 | <- | Plus |
arm_3L | 7811169..7811323 | 574..728 | 100 | <- | Plus |
arm_3L | 7846283..7846385 | 729..831 | 100 | | Plus |
BS01446.5prime Sequence
845 bp (734 high quality bases) assembled on 2005-11-29
> BS01446.5prime
GAAGTTATCAGTCGACATGAGCGACAGGGAGCGATCGTCCCCAACACTGA
TCGAAACTGGTTTAAAAAACTTAATTGGCGGCCGTGATGGTAATTACCCA
CTGATCAGCGGCATTAATGGCAAATCCACATCGAATAGCAAAGAGATCAT
CTGCCCAGATGACAAATACAAGGAGGAGGGCGACATCTGGAATGTTGAGG
CGCAAACAGCGTTTCTCGGCCCAAATCTGTGGGACAAGACCCTGCCCTAT
GATGCCGACCTCAAGGTAACACAATATGCCGACCTAGACGAATTCCTGTC
GGAGAACAACATACCTGATGGCCTGCCCGGCACGCATCTGGGCCACTCCA
GTGGCCTGGGCCACCGGTCCGATTCCCTGGGTCACGCAGCGGGTCTGTCT
CTTGGTCTTGGCCACATAACCACAAAGCGAGAGCGGTCGCCCTCGCCATC
CGACTGCATCAGTCCGGACACGCTAAATCCGCCATCGCCGGCCGAGTCAA
CATTTTCGTTCGCCTCCTCGGGCCGTGACTTTGATCCGCGAACCAGAGCC
TTCTCCGACGAGGAGCTCAAGCCGCAGCCGATGATCAAAAAGTCACGCAA
GCAATTCGTTCCAGATGAGCTCAAGGACGACAAGTACTGGGCACGTCGCC
GGAAGAACAACATTGCCGCCAAGCGATCCCGCGATGCCCGGCGCCAGAAG
GAGAACCAGATTGCGATGCGGGCACGCTACTTGGAGAAGGAAAATGCAAC
ATTACATCAGGAGGTGGAGCAGTTGAAACAGGAGAACATGGACTTGCGTG
CACGTCTATCGAAATTCCCAGATGTGTAACGAAGCTTTCTAGACC
BS01446.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17888-PB | 813 | Pdp1-RB | 1..813 | 17..829 | 4040 | 99.8 | Plus |
CG17888-PA | 813 | Pdp1-RA | 1..813 | 17..829 | 4040 | 99.8 | Plus |
CG17888-PG | 855 | Pdp1-RG | 145..855 | 119..829 | 3530 | 99.8 | Plus |
CG17888-PE | 855 | Pdp1-RE | 145..855 | 119..829 | 3530 | 99.8 | Plus |
CG17888-PF | 753 | Pdp1-RF | 43..753 | 119..829 | 3530 | 99.8 | Plus |
CG17888-PD | 1944 | Pdp1-RD | 1234..1944 | 119..829 | 3530 | 99.8 | Plus |
CG17888-PH | 1062 | Pdp1-RH | 352..1062 | 119..829 | 3530 | 99.8 | Plus |
CG17888-PC | 1713 | Pdp1-RC | 1003..1713 | 119..829 | 3530 | 99.8 | Plus |
CG17888-PG | 855 | Pdp1-RG | 1..106 | 17..122 | 530 | 100 | Plus |
CG17888-PE | 855 | Pdp1-RE | 1..106 | 17..122 | 530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdp1-RK | 6855 | CG17888-RK | 1175..1987 | 17..829 | 4050 | 99.9 | Plus |
Pdp1-RP | 6398 | CG17888-RP | 1175..1987 | 17..829 | 4050 | 99.9 | Plus |
Pdp1-RB | 5065 | CG17888-RB | 2264..3076 | 17..829 | 4050 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:13:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7816484..7816725 | 742..501 | 1210 | 100 | Minus |
3L | 28110227 | 3L | 7817437..7817662 | 500..275 | 1130 | 100 | Minus |
3L | 28110227 | 3L | 7818069..7818224 | 274..119 | 780 | 100 | Minus |
3L | 28110227 | 3L | 7853182..7853285 | 120..17 | 520 | 100 | Minus |
3L | 28110227 | 3L | 7816326..7816412 | 829..743 | 420 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:13:18 has no hits.
BS01446.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:20 Download gff for
BS01446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-PB | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:24 Download gff for
BS01446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17888-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:35:43 Download gff for
BS01446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 2264..3079 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:09:29 Download gff for
BS01446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 2264..3079 | 17..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:09:29 Download gff for
BS01446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7816323..7816412 | 743..832 | 97 | <- | Minus |
3L | 7816484..7816725 | 501..742 | 100 | <- | Minus |
3L | 7817437..7817662 | 275..500 | 100 | <- | Minus |
3L | 7818069..7818223 | 120..274 | 100 | <- | Minus |
3L | 7853183..7853285 | 17..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:35:43 Download gff for
BS01446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7809423..7809512 | 743..832 | 97 | <- | Minus |
arm_3L | 7809584..7809825 | 501..742 | 100 | <- | Minus |
arm_3L | 7810537..7810762 | 275..500 | 100 | <- | Minus |
arm_3L | 7811169..7811323 | 120..274 | 100 | <- | Minus |
arm_3L | 7846283..7846385 | 17..119 | 100 | | Minus |
BS01446.complete Sequence
847 bp (847 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634612
> BS01446.complete
GAAGTTATCAGTCGACATGAGCGACAGGGAGCGATCGTCCCCAACACTGA
TCGAAACTGGTTTAAAAAACTTAATTGGCGGCCGTGATGGTAATTACCCA
CTGATCAGCGGCATTAATGGCAAATCCACATCGAATAGCAAAGAGATCAT
CTGCCCAGATGACAAATACAAGGAGGAGGGCGACATCTGGAATGTTGAGG
CGCAAACAGCGTTTCTCGGCCCAAATCTGTGGGACAAGACCCTGCCCTAT
GATGCCGACCTCAAGGTAACACAATATGCCGACCTAGACGAATTCCTGTC
GGAGAACAACATACCTGATGGCCTGCCCGGCACGCATCTGGGCCACTCCA
GTGGCCTGGGCCACCGGTCCGATTCCCTGGGTCACGCAGCGGGTCTGTCT
CTTGGTCTTGGCCACATAACCACAAAGCGAGAGCGGTCGCCCTCGCCATC
CGACTGCATCAGTCCGGACACGCTAAATCCGCCATCGCCGGCCGAGTCAA
CATTTTCGTTCGCCTCCTCGGGCCGTGACTTTGATCCGCGAACCAGAGCC
TTCTCCGACGAGGAGCTCAAGCCGCAGCCGATGATCAAAAAGTCACGCAA
GCAATTCGTTCCAGATGAGCTCAAGGACGACAAGTACTGGGCACGTCGCC
GGAAGAACAACATTGCCGCCAAGCGATCCCGCGATGCCCGGCGCCAGAAG
GAGAACCAGATTGCGATGCGGGCACGCTACTTGGAGAAGGAAAATGCAAC
ATTACATCAGGAGGTGGAGCAGTTGAAACAGGAGAACATGGACTTGCGTG
CACGTCTATCGAAATTCCAAGATGTGTAACGAAGCTTTCTAGACCAT
BS01446.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdp1-RK | 813 | CG17888-PK | 1..813 | 17..829 | 4065 | 100 | Plus |
Pdp1-RP | 813 | CG17888-PP | 1..813 | 17..829 | 4065 | 100 | Plus |
Pdp1-RB | 813 | CG17888-PB | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:53:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdp1-RK | 6855 | CG17888-RK | 1175..1987 | 17..829 | 4065 | 100 | Plus |
Pdp1-RP | 6398 | CG17888-RP | 1175..1987 | 17..829 | 4065 | 100 | Plus |
Pdp1-RB | 5065 | CG17888-RB | 2264..3076 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:53:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7816484..7816725 | 742..501 | 1210 | 100 | Minus |
3L | 28110227 | 3L | 7817437..7817662 | 500..275 | 1130 | 100 | Minus |
3L | 28110227 | 3L | 7818069..7818224 | 274..119 | 780 | 100 | Minus |
3L | 28110227 | 3L | 7853182..7853285 | 120..17 | 520 | 100 | Minus |
3L | 28110227 | 3L | 7816326..7816412 | 829..743 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:53:14 has no hits.
BS01446.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:13 Download gff for
BS01446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:26 Download gff for
BS01446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 1173..1987 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:29 Download gff for
BS01446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 2264..3078 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:13 Download gff for
BS01446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 1173..1988 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:03 Download gff for
BS01446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdp1-RB | 2264..3078 | 17..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:03 Download gff for
BS01446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7853183..7853285 | 17..119 | 100 | | Minus |
3L | 7816324..7816412 | 743..831 | 98 | <- | Minus |
3L | 7816484..7816725 | 501..742 | 100 | <- | Minus |
3L | 7817437..7817662 | 275..500 | 100 | <- | Minus |
3L | 7818069..7818223 | 120..274 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:29 Download gff for
BS01446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7809424..7809512 | 743..831 | 98 | <- | Minus |
arm_3L | 7809584..7809825 | 501..742 | 100 | <- | Minus |
arm_3L | 7810537..7810762 | 275..500 | 100 | <- | Minus |
arm_3L | 7811169..7811323 | 120..274 | 100 | <- | Minus |
arm_3L | 7846283..7846385 | 17..119 | 100 | | Minus |
BS01446.pep Sequence
Translation from 16 to 828
> BS01446.pep
MSDRERSSPTLIETGLKNLIGGRDGNYPLISGINGKSTSNSKEIICPDDK
YKEEGDIWNVEAQTAFLGPNLWDKTLPYDADLKVTQYADLDEFLSENNIP
DGLPGTHLGHSSGLGHRSDSLGHAAGLSLGLGHITTKRERSPSPSDCISP
DTLNPPSPAESTFSFASSGRDFDPRTRAFSDEELKPQPMIKKSRKQFVPD
ELKDDKYWARRRKNNIAAKRSRDARRQKENQIAMRARYLEKENATLHQEV
EQLKQENMDLRARLSKFQDV*
BS01446.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdp1-PK | 270 | CG17888-PK | 1..270 | 1..270 | 1417 | 100 | Plus |
Pdp1-PP | 270 | CG17888-PP | 1..270 | 1..270 | 1417 | 100 | Plus |
Pdp1-PB | 270 | CG17888-PB | 1..270 | 1..270 | 1417 | 100 | Plus |
Pdp1-PM | 275 | CG17888-PM | 1..275 | 1..270 | 1396 | 97.8 | Plus |
Pdp1-PG | 284 | CG17888-PG | 1..284 | 1..270 | 1392 | 95.1 | Plus |