Clone BS01446 Report

Search the DGRC for BS01446

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:14
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptPdp1-RB
Protein status:BS01446.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01446.3prime Sequence

845 bp (745 high quality bases) assembled on 2005-11-29

> BS01446.3prime
ATGGTCTAGAAAGCTTCGTTACACATCTTGGAATTTCGATAGACGTGCAC
GCAAGTCCATGTTCTCCTGTTTCAACTGCTCCACCTCCTGATGTAATGTT
GCATTTTCCTTCTCCAAGTAGCGTGCCCGCATCGCAATCTGGTTCTCCTT
CTGGCGCCGGGCATCGCGGGATCGCTTGGCGGCAATGTTGTTCTTCCGGC
GACGTGCCCAGTACTTGTCGTCCTTGAGCTCATCTGGAACGAATTGCTTG
CGTGACTTTTTGATCATCGGCTGCGGCTTGAGCTCCTCGTCGGAGAAGGC
TCTGGTTCGCGGATCAAAGTCACGGCCCGAGGAGGCGAACGAAAATGTTG
ACTCGGCCGGCGATGGCGGATTTAGCGTGTCCGGACTGATGCAGTCGGAT
GGCGAGGGCGACCGCTCTCGCTTTGTGGTTATGTGGCCAAGACCAAGAGA
CAGACCCGCTGCGTGACCCAGGGAATCGGACCGGTGGCCCAGGCCACTGG
AGTGGCCCAGATGCGTGCCGGGCAGGCCATCAGGTATGTTGTTCTCCGAC
AGGAATTCGTCTAGGTCGGCATATTGTGTTACCTTGAGGTCGGCATCATA
GGGCAGGGTCTTGTCCCACAGATTTGGGCCGAGAAACGCTGTTTGCGCCT
CAACATTCCAGATGTCGCCCTCCTCCTTGTATTTGTCATCTGGGCAGATG
ATCTCTTTGCTATTCGATGTGGATTTGCCATTAATGCCGCTGATCAGTGG
GTAATTACCATCACGGCCGCCAATTAAGTTTTTTAAACCAGTTTCGATCA
GTGTTGGGGACGATCGCTCCCTGTCGCTCATGTCGACTGATAACT

BS01446.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG17888-PB 813 Pdp1-RB 1..813 831..19 4065 100 Minus
CG17888-PA 813 Pdp1-RA 1..813 831..19 4065 100 Minus
CG17888-PG 855 Pdp1-RG 145..855 729..19 3555 100 Minus
CG17888-PE 855 Pdp1-RE 145..855 729..19 3555 100 Minus
CG17888-PF 753 Pdp1-RF 43..753 729..19 3555 100 Minus
CG17888-PD 1944 Pdp1-RD 1234..1944 729..19 3555 100 Minus
CG17888-PH 1062 Pdp1-RH 352..1062 729..19 3555 100 Minus
CG17888-PC 1713 Pdp1-RC 1003..1713 729..19 3555 100 Minus
CG17888-PG 855 Pdp1-RG 1..106 831..726 530 100 Minus
CG17888-PE 855 Pdp1-RE 1..106 831..726 530 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
Pdp1-RK 6855 CG17888-RK 1175..1987 831..19 4065 100 Minus
Pdp1-RP 6398 CG17888-RP 1175..1987 831..19 4065 100 Minus
Pdp1-RB 5065 CG17888-RB 2264..3076 831..19 4065 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7816484..7816725 106..347 1210 100 Plus
3L 28110227 3L 7817437..7817662 348..573 1130 100 Plus
3L 28110227 3L 7818069..7818224 574..729 780 100 Plus
3L 28110227 3L 7853182..7853285 728..831 520 100 Plus
3L 28110227 3L 7816326..7816412 19..105 435 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:37:37 has no hits.

BS01446.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:19 Download gff for BS01446.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdp1-PB 1..813 19..831 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:22 Download gff for BS01446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17888-PA 1..813 19..831 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:27:36 Download gff for BS01446.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdp1-RB 2264..3079 16..831 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:21 Download gff for BS01446.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdp1-RB 2264..3079 16..831 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:21 Download gff for BS01446.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7816323..7816412 16..105 98 <- Plus
3L 7816484..7816725 106..347 100 <- Plus
3L 7817437..7817662 348..573 100 <- Plus
3L 7818069..7818223 574..728 100 <- Plus
3L 7853183..7853285 729..831 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:27:36 Download gff for BS01446.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7809423..7809512 16..105 98 <- Plus
arm_3L 7809584..7809825 106..347 100 <- Plus
arm_3L 7810537..7810762 348..573 100 <- Plus
arm_3L 7811169..7811323 574..728 100 <- Plus
arm_3L 7846283..7846385 729..831 100   Plus

BS01446.5prime Sequence

845 bp (734 high quality bases) assembled on 2005-11-29

> BS01446.5prime
GAAGTTATCAGTCGACATGAGCGACAGGGAGCGATCGTCCCCAACACTGA
TCGAAACTGGTTTAAAAAACTTAATTGGCGGCCGTGATGGTAATTACCCA
CTGATCAGCGGCATTAATGGCAAATCCACATCGAATAGCAAAGAGATCAT
CTGCCCAGATGACAAATACAAGGAGGAGGGCGACATCTGGAATGTTGAGG
CGCAAACAGCGTTTCTCGGCCCAAATCTGTGGGACAAGACCCTGCCCTAT
GATGCCGACCTCAAGGTAACACAATATGCCGACCTAGACGAATTCCTGTC
GGAGAACAACATACCTGATGGCCTGCCCGGCACGCATCTGGGCCACTCCA
GTGGCCTGGGCCACCGGTCCGATTCCCTGGGTCACGCAGCGGGTCTGTCT
CTTGGTCTTGGCCACATAACCACAAAGCGAGAGCGGTCGCCCTCGCCATC
CGACTGCATCAGTCCGGACACGCTAAATCCGCCATCGCCGGCCGAGTCAA
CATTTTCGTTCGCCTCCTCGGGCCGTGACTTTGATCCGCGAACCAGAGCC
TTCTCCGACGAGGAGCTCAAGCCGCAGCCGATGATCAAAAAGTCACGCAA
GCAATTCGTTCCAGATGAGCTCAAGGACGACAAGTACTGGGCACGTCGCC
GGAAGAACAACATTGCCGCCAAGCGATCCCGCGATGCCCGGCGCCAGAAG
GAGAACCAGATTGCGATGCGGGCACGCTACTTGGAGAAGGAAAATGCAAC
ATTACATCAGGAGGTGGAGCAGTTGAAACAGGAGAACATGGACTTGCGTG
CACGTCTATCGAAATTCCCAGATGTGTAACGAAGCTTTCTAGACC

BS01446.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG17888-PB 813 Pdp1-RB 1..813 17..829 4040 99.8 Plus
CG17888-PA 813 Pdp1-RA 1..813 17..829 4040 99.8 Plus
CG17888-PG 855 Pdp1-RG 145..855 119..829 3530 99.8 Plus
CG17888-PE 855 Pdp1-RE 145..855 119..829 3530 99.8 Plus
CG17888-PF 753 Pdp1-RF 43..753 119..829 3530 99.8 Plus
CG17888-PD 1944 Pdp1-RD 1234..1944 119..829 3530 99.8 Plus
CG17888-PH 1062 Pdp1-RH 352..1062 119..829 3530 99.8 Plus
CG17888-PC 1713 Pdp1-RC 1003..1713 119..829 3530 99.8 Plus
CG17888-PG 855 Pdp1-RG 1..106 17..122 530 100 Plus
CG17888-PE 855 Pdp1-RE 1..106 17..122 530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
Pdp1-RK 6855 CG17888-RK 1175..1987 17..829 4050 99.9 Plus
Pdp1-RP 6398 CG17888-RP 1175..1987 17..829 4050 99.9 Plus
Pdp1-RB 5065 CG17888-RB 2264..3076 17..829 4050 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7816484..7816725 742..501 1210 100 Minus
3L 28110227 3L 7817437..7817662 500..275 1130 100 Minus
3L 28110227 3L 7818069..7818224 274..119 780 100 Minus
3L 28110227 3L 7853182..7853285 120..17 520 100 Minus
3L 28110227 3L 7816326..7816412 829..743 420 98.9 Minus
Blast to na_te.dros performed on 2015-02-13 08:13:18 has no hits.

BS01446.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:20 Download gff for BS01446.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdp1-PB 1..813 17..829 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:24 Download gff for BS01446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17888-PA 1..813 17..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:35:43 Download gff for BS01446.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdp1-RB 2264..3079 17..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:09:29 Download gff for BS01446.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdp1-RB 2264..3079 17..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:09:29 Download gff for BS01446.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7816323..7816412 743..832 97 <- Minus
3L 7816484..7816725 501..742 100 <- Minus
3L 7817437..7817662 275..500 100 <- Minus
3L 7818069..7818223 120..274 100 <- Minus
3L 7853183..7853285 17..119 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:35:43 Download gff for BS01446.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7809423..7809512 743..832 97 <- Minus
arm_3L 7809584..7809825 501..742 100 <- Minus
arm_3L 7810537..7810762 275..500 100 <- Minus
arm_3L 7811169..7811323 120..274 100 <- Minus
arm_3L 7846283..7846385 17..119 100   Minus

BS01446.complete Sequence

847 bp (847 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634612

> BS01446.complete
GAAGTTATCAGTCGACATGAGCGACAGGGAGCGATCGTCCCCAACACTGA
TCGAAACTGGTTTAAAAAACTTAATTGGCGGCCGTGATGGTAATTACCCA
CTGATCAGCGGCATTAATGGCAAATCCACATCGAATAGCAAAGAGATCAT
CTGCCCAGATGACAAATACAAGGAGGAGGGCGACATCTGGAATGTTGAGG
CGCAAACAGCGTTTCTCGGCCCAAATCTGTGGGACAAGACCCTGCCCTAT
GATGCCGACCTCAAGGTAACACAATATGCCGACCTAGACGAATTCCTGTC
GGAGAACAACATACCTGATGGCCTGCCCGGCACGCATCTGGGCCACTCCA
GTGGCCTGGGCCACCGGTCCGATTCCCTGGGTCACGCAGCGGGTCTGTCT
CTTGGTCTTGGCCACATAACCACAAAGCGAGAGCGGTCGCCCTCGCCATC
CGACTGCATCAGTCCGGACACGCTAAATCCGCCATCGCCGGCCGAGTCAA
CATTTTCGTTCGCCTCCTCGGGCCGTGACTTTGATCCGCGAACCAGAGCC
TTCTCCGACGAGGAGCTCAAGCCGCAGCCGATGATCAAAAAGTCACGCAA
GCAATTCGTTCCAGATGAGCTCAAGGACGACAAGTACTGGGCACGTCGCC
GGAAGAACAACATTGCCGCCAAGCGATCCCGCGATGCCCGGCGCCAGAAG
GAGAACCAGATTGCGATGCGGGCACGCTACTTGGAGAAGGAAAATGCAAC
ATTACATCAGGAGGTGGAGCAGTTGAAACAGGAGAACATGGACTTGCGTG
CACGTCTATCGAAATTCCAAGATGTGTAACGAAGCTTTCTAGACCAT

BS01446.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
Pdp1-RK 813 CG17888-PK 1..813 17..829 4065 100 Plus
Pdp1-RP 813 CG17888-PP 1..813 17..829 4065 100 Plus
Pdp1-RB 813 CG17888-PB 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
Pdp1-RK 6855 CG17888-RK 1175..1987 17..829 4065 100 Plus
Pdp1-RP 6398 CG17888-RP 1175..1987 17..829 4065 100 Plus
Pdp1-RB 5065 CG17888-RB 2264..3076 17..829 4065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7816484..7816725 742..501 1210 100 Minus
3L 28110227 3L 7817437..7817662 500..275 1130 100 Minus
3L 28110227 3L 7818069..7818224 274..119 780 100 Minus
3L 28110227 3L 7853182..7853285 120..17 520 100 Minus
3L 28110227 3L 7816326..7816412 829..743 435 100 Minus
Blast to na_te.dros performed on 2014-11-28 07:53:14 has no hits.

BS01446.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:13 Download gff for BS01446.complete
Subject Subject Range Query Range Percent Splice Strand
Pdp1-RB 1..813 17..829 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:26 Download gff for BS01446.complete
Subject Subject Range Query Range Percent Splice Strand
Pdp1-RB 1173..1987 17..831 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:29 Download gff for BS01446.complete
Subject Subject Range Query Range Percent Splice Strand
Pdp1-RB 2264..3078 17..831 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:13 Download gff for BS01446.complete
Subject Subject Range Query Range Percent Splice Strand
Pdp1-RB 1173..1988 17..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:03 Download gff for BS01446.complete
Subject Subject Range Query Range Percent Splice Strand
Pdp1-RB 2264..3078 17..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:03 Download gff for BS01446.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7853183..7853285 17..119 100   Minus
3L 7816324..7816412 743..831 98 <- Minus
3L 7816484..7816725 501..742 100 <- Minus
3L 7817437..7817662 275..500 100 <- Minus
3L 7818069..7818223 120..274 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:29 Download gff for BS01446.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7809424..7809512 743..831 98 <- Minus
arm_3L 7809584..7809825 501..742 100 <- Minus
arm_3L 7810537..7810762 275..500 100 <- Minus
arm_3L 7811169..7811323 120..274 100 <- Minus
arm_3L 7846283..7846385 17..119 100   Minus

BS01446.pep Sequence

Translation from 16 to 828

> BS01446.pep
MSDRERSSPTLIETGLKNLIGGRDGNYPLISGINGKSTSNSKEIICPDDK
YKEEGDIWNVEAQTAFLGPNLWDKTLPYDADLKVTQYADLDEFLSENNIP
DGLPGTHLGHSSGLGHRSDSLGHAAGLSLGLGHITTKRERSPSPSDCISP
DTLNPPSPAESTFSFASSGRDFDPRTRAFSDEELKPQPMIKKSRKQFVPD
ELKDDKYWARRRKNNIAAKRSRDARRQKENQIAMRARYLEKENATLHQEV
EQLKQENMDLRARLSKFQDV*

BS01446.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
Pdp1-PK 270 CG17888-PK 1..270 1..270 1417 100 Plus
Pdp1-PP 270 CG17888-PP 1..270 1..270 1417 100 Plus
Pdp1-PB 270 CG17888-PB 1..270 1..270 1417 100 Plus
Pdp1-PM 275 CG17888-PM 1..275 1..270 1396 97.8 Plus
Pdp1-PG 284 CG17888-PG 1..284 1..270 1392 95.1 Plus