Clone BS01448 Report

Search the DGRC for BS01448

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:14
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptDnz1-RA
Protein status:BS01448.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01448.3prime Sequence

858 bp (797 high quality bases) assembled on 2005-11-29

> BS01448.3prime
ATGGTCTAGAAAGCTTCGCTAGACCTCGTGGCTCAGTAGAGGCGTATCAT
GGTAGCGGGAGGCATGATTGAGACTGGTGCAGGGCAGCAGCCACAGCGCC
GGATGTCCGCGTCCGAACACATCCGCCAGCAGCTGGTACTTGCGCCGATT
TGGACGATAGGTGCCCTTCTGCTGTATCGCCTCCACGGCCGTCTCGTCGT
ACAGAATCGCATGCAGCTGGTCCACCATGATGGCCGTAACGAACAGGCCG
AACAGCGCCGACACCAGCATAAGGATAACCGAGTGAATCATTCGCAACTG
GGTTTCGATCACGTTCTGGCTGCACTCCTCGCAGGGCCACACCCAGGAAC
CGACGATAAGGGCAATGGAGTAGAGCGACAGCAGCGCCACGTAGATGAGG
AACTGCAGGAAGTACTTCTGATTGCGCTCGCCCACACAGTTGTTGATCCA
GGGGCAGTGGTGATCCATGCGCCGGATGCACCGCTTGCAGATGCGACAAT
GATGGGCGCGTGGCGGCCTATACGTTTCGCAGCGGGTGCACACGGTCCAT
TCGCTGCTGTGTCCATTACCGGGCGGAGGATTGTTTTTGTTGGTCGTGTG
CAGGTCGGAGAAGTCCAGACGATTGGCGGGCAGCGGCACAGTGCCTGGAT
CGGAGAACACGGCCTTGGAGTGGGACATGGCCAACAGGAAGACGACGGTG
TTAAAGAGCACCACATGGAAGGACATCCAGAGGCTGCCCGGCATGGTGGT
CAGAATGATCCAACGGATGACCACATAGTCCGCGTACAGAACTGCTCCGT
AGGTGACTACCAAGCAGGCGATGCCACAGGGATCTCGGATAAAAAACATG
TCGACTGA

BS01448.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6627-PA 831 Dnz1-RA 5..831 845..19 4135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dnz1-RA 1949 CG6627-RA 367..1197 849..19 4140 99.9 Minus
CG8314-RA 1280 CG8314-RA 536..637 511..410 180 78.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10855654..10856101 289..736 2240 100 Plus
2L 23513712 2L 10855187..10855457 19..289 1355 100 Plus
2L 23513712 2L 10856163..10856278 734..849 565 99.1 Plus
Blast to na_te.dros performed on 2015-02-09 02:55:56 has no hits.

BS01448.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:23 Download gff for BS01448.3prime
Subject Subject Range Query Range Percent Splice Strand
Dnz1-PA 1..831 19..849 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:28 Download gff for BS01448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6627-PA 1..831 19..849 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:10:05 Download gff for BS01448.3prime
Subject Subject Range Query Range Percent Splice Strand
Dnz1-RA 357..1197 19..857 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:19:56 Download gff for BS01448.3prime
Subject Subject Range Query Range Percent Splice Strand
Dnz1-RA 357..1197 19..857 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:19:56 Download gff for BS01448.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10856163..10856282 734..857 95   Plus
2L 10855187..10855457 19..289 100 <- Plus
2L 10855655..10856098 290..733 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:10:05 Download gff for BS01448.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10855187..10855457 19..289 100 <- Plus
arm_2L 10855655..10856098 290..733 100 <- Plus
arm_2L 10856163..10856282 734..857 95   Plus

BS01448.5prime Sequence

863 bp (831 high quality bases) assembled on 2005-11-29

> BS01448.5prime
GAAGTTATCAGTCGACATGGTTTTTATCCGAGATCCCTGTGGCATCGCCT
GCTTGGTAGTCACCTACGGAGCAGTTCTGTACGCGGACTATGTGGTCATC
CGTTGGATCATTCTGACCACCATGCCGGGCAGCCTCTGGATGTCCTTCCA
TGTGGTGCTCTTTAACACCGTCGTCTTCCTGTTGGCCATGTCCCACTCCA
AGGCCGTGTTCTCCGATCCAGGCACTGTGCCGCTGCCCGCCAATCGTCTG
GACTTCTCCGACCTGCACACGACCAACAAAAACAATCCTCCGCCCGGTAA
TGGACACAGCAGCGAATGGACCGTGTGCACCCGCTGCGAAACGTATAGGC
CGCCACGCGCCCATCATTGTCGCATCTGCAAGCGGTGCATCCGGCGCATG
GATCACCACTGCCCCTGGATCAACAACTGTGTGGGCGAGCGCAATCAGAA
GTACTTCCTGCAGTTCCTCATCTACGTGGCGCTGCTGTCGCTCTACTCCA
TTGCCCTTATCGTCGGTTCCTGGGTGTGGCCCTGCGAGGAGTGCAGCCAG
AACGTGATCGAAACCCAGTTGCGAATGATTCACTCGGTTATCCTTATGCT
GGTGTCGGCGCTGTTCGGCCTGTTCGTTACGGCCATCATGGTGGACCAGC
TGCATGCGATTCTGTACGACGAGACGGCCGTGGAGGCGATACAGCAGAAG
GGCACCTATCGTCCAAATCGGCGCAAGTACCAGCTGCTGGCGGATGTGTT
CGGACGCGGACATCCGGCGCTGTGGCTGCTGCCCTGCACCAGTCTCAATC
ATGCCTCCCGCTACCATGATACGCCTCTACTGAGCCACGAGGTCTAGCGA
AACTTTCTAGACC

BS01448.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6627-PA 831 Dnz1-RA 1..831 17..847 4155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dnz1-RA 1949 CG6627-RA 367..1197 17..847 4155 100 Plus
CG8314-RA 1280 CG8314-RA 536..637 355..456 180 78.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10855654..10856101 577..130 2240 100 Minus
2L 23513712 2L 10855187..10855457 847..577 1355 100 Minus
2L 23513712 2L 10856163..10856278 132..17 580 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:37:53 has no hits.

BS01448.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:24 Download gff for BS01448.5prime
Subject Subject Range Query Range Percent Splice Strand
Dnz1-PA 1..831 17..847 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:30 Download gff for BS01448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6627-PA 1..831 17..847 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:30:25 Download gff for BS01448.5prime
Subject Subject Range Query Range Percent Splice Strand
Dnz1-RA 363..1197 10..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:21:24 Download gff for BS01448.5prime
Subject Subject Range Query Range Percent Splice Strand
Dnz1-RA 363..1197 10..847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:21:24 Download gff for BS01448.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10855187..10855457 577..847 100 <- Minus
2L 10855655..10856098 133..576 100 <- Minus
2L 10856163..10856282 10..132 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:30:25 Download gff for BS01448.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10855187..10855457 577..847 100 <- Minus
arm_2L 10855655..10856098 133..576 100 <- Minus
arm_2L 10856163..10856282 10..132 97   Minus

BS01448.complete Sequence

865 bp (865 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634613

> BS01448.complete
GAAGTTATCAGTCGACATGGTTTTTATCCGAGATCCCTGTGGCATCGCCT
GCTTGGTAGTCACCTACGGAGCAGTTCTGTACGCGGACTATGTGGTCATC
CGTTGGATCATTCTGACCACCATGCCGGGCAGCCTCTGGATGTCCTTCCA
TGTGGTGCTCTTTAACACCGTCGTCTTCCTGTTGGCCATGTCCCACTCCA
AGGCCGTGTTCTCCGATCCAGGCACTGTGCCGCTGCCCGCCAATCGTCTG
GACTTCTCCGACCTGCACACGACCAACAAAAACAATCCTCCGCCCGGTAA
TGGACACAGCAGCGAATGGACCGTGTGCACCCGCTGCGAAACGTATAGGC
CGCCACGCGCCCATCATTGTCGCATCTGCAAGCGGTGCATCCGGCGCATG
GATCACCACTGCCCCTGGATCAACAACTGTGTGGGCGAGCGCAATCAGAA
GTACTTCCTGCAGTTCCTCATCTACGTGGCGCTGCTGTCGCTCTACTCCA
TTGCCCTTATCGTCGGTTCCTGGGTGTGGCCCTGCGAGGAGTGCAGCCAG
AACGTGATCGAAACCCAGTTGCGAATGATTCACTCGGTTATCCTTATGCT
GGTGTCGGCGCTGTTCGGCCTGTTCGTTACGGCCATCATGGTGGACCAGC
TGCATGCGATTCTGTACGACGAGACGGCCGTGGAGGCGATACAGCAGAAG
GGCACCTATCGTCCAAATCGGCGCAAGTACCAGCTGCTGGCGGATGTGTT
CGGACGCGGACATCCGGCGCTGTGGCTGCTGCCCTGCACCAGTCTCAATC
ATGCCTCCCGCTACCATGATACGCCTCTACTGAGCCACGAGGTCTAGCGA
AGCTTTCTAGACCAT

BS01448.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dnz1-RA 831 CG6627-PA 1..831 17..847 4155 100 Plus
CG8314-RA 882 CG8314-PA 396..497 355..456 180 78.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dnz1-RA 1949 CG6627-RA 367..1197 17..847 4155 100 Plus
CG8314-RA 1280 CG8314-RA 536..637 355..456 180 78.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10855654..10856101 577..130 2240 100 Minus
2L 23513712 2L 10855187..10855457 847..577 1355 100 Minus
2L 23513712 2L 10856163..10856278 132..17 580 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:48:56 has no hits.

BS01448.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:14 Download gff for BS01448.complete
Subject Subject Range Query Range Percent Splice Strand
Dnz1-RA 1..831 17..847 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:11 Download gff for BS01448.complete
Subject Subject Range Query Range Percent Splice Strand
Dnz1-RA 388..1222 10..847 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:16 Download gff for BS01448.complete
Subject Subject Range Query Range Percent Splice Strand
Dnz1-RA 367..1198 17..849 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:14 Download gff for BS01448.complete
Subject Subject Range Query Range Percent Splice Strand
Dnz1-RA 388..1222 10..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:50 Download gff for BS01448.complete
Subject Subject Range Query Range Percent Splice Strand
Dnz1-RA 367..1198 17..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:50 Download gff for BS01448.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10855185..10855457 577..849 99 <- Minus
2L 10855655..10856098 133..576 100 <- Minus
2L 10856163..10856278 17..132 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:16 Download gff for BS01448.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10855185..10855457 577..849 99 <- Minus
arm_2L 10855655..10856098 133..576 100 <- Minus
arm_2L 10856163..10856278 17..132 100   Minus

BS01448.pep Sequence

Translation from 16 to 846

> BS01448.pep
MVFIRDPCGIACLVVTYGAVLYADYVVIRWIILTTMPGSLWMSFHVVLFN
TVVFLLAMSHSKAVFSDPGTVPLPANRLDFSDLHTTNKNNPPPGNGHSSE
WTVCTRCETYRPPRAHHCRICKRCIRRMDHHCPWINNCVGERNQKYFLQF
LIYVALLSLYSIALIVGSWVWPCEECSQNVIETQLRMIHSVILMLVSALF
GLFVTAIMVDQLHAILYDETAVEAIQQKGTYRPNRRKYQLLADVFGRGHP
ALWLLPCTSLNHASRYHDTPLLSHEV*

BS01448.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dnz1-PA 276 CG6627-PA 1..276 1..276 1504 100 Plus
CG8314-PA 293 CG8314-PA 33..287 4..267 424 32.2 Plus
CG1407-PB 338 CG1407-PB 10..292 5..259 250 25.1 Plus
CG1407-PD 352 CG1407-PD 10..292 5..259 250 25.1 Plus
CG1407-PA 443 CG1407-PA 10..292 5..259 250 25.1 Plus