Clone Sequence Records
BS01450.3prime Sequence
865 bp (724 high quality bases) assembled on 2005-11-29
> BS01450.3prime
ATGGTCTAGAAAGCTTCGCTACTCCGAGTCGCTGCTGCCTGACTTGTGCT
CCTCCTCTTTCTTCTCTTCAGTCTTGTAGTGGCGATATTCTTTCTTGAGC
TCCCACATGTTCTTGTGCGGGTTCTTCATATTGTAATCGCAGACATCCTT
GAGAATCTCCTTCAGGTAGCTAATCGGCTGGTTGGTGATCTTGACCAGAT
CCTTGATGTTATAGTATTGATGCTTCTCGAATGCGTGGAAGAGCATATCC
ATCACGGCATTCTTGTCGTCGCGCGCCTTCTTGCCCTCGGCCTTCTTTCG
CTCCCGATATTCAATGTTGTGTGCGTGGTCTTTTACAGGCTTAAAGTTCT
GCACGATTTTGTCGATAGGCTGCACACGTCGCTGTGGTTCCGATGCCTTG
CGTATGGACTCCAGCTTTAGTTTCATGTAGCAGTTGTCGGCGATGGGTCG
GCACTCTAGCTTTTGCACAATCCTGCCCTCCATATACAACTTTTCGTTAT
CCGGCTGTGCCGCCGAGGTAGTCGAGTTCTCCTTGCCATCGGACGGTGCC
ATGTGCGAGAATACGCCGAGCGTCTGCTTGGTGACCTGCGACACGTCCAG
GATGTGCTCGGTGGGTATTTTCTCCTCGGGATCTAGAGCCAAAACGGCGG
GCGTGAGGGAAAGCGAGACCTGNGCCTTTTGGCCAGGTGTCTTGTTTATC
CGGAGCTTGCCCACGTCCATGTTCGTCGGCGCCTTCTCCCATTTCTGGGG
CATGTACTTGGGCACCTTCACCAGCCATACGCCTCGCCCAGCATTGGACA
GGTCCCAGTCCTTGTCGATGATCTGTGTCTTTTCCTTATCCTCTTTCGAC
ATGTCGACTGATAAC
BS01450.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6538-PA | 834 | TfIIFbeta-RA | 1..834 | 852..19 | 4026 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:22:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIFbeta-RA | 1118 | CG6538-RA | 106..940 | 852..18 | 4089 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:22:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10767163..10767699 | 316..852 | 2599 | 98.9 | Plus |
3R | 32079331 | 3R | 10766800..10767097 | 18..315 | 1490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:22:26 has no hits.
BS01450.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:27 Download gff for
BS01450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6538-PA | 1..834 | 19..852 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:34 Download gff for
BS01450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6538-PA | 1..834 | 19..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:40:56 Download gff for
BS01450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFbeta-RA | 98..943 | 11..860 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:37:17 Download gff for
BS01450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFbeta-RA | 98..943 | 11..860 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:37:17 Download gff for
BS01450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10766797..10767097 | 11..315 | 98 | <- | Plus |
3R | 10767163..10767703 | 316..860 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:40:56 Download gff for
BS01450.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6592519..6592819 | 11..315 | 98 | <- | Plus |
arm_3R | 6592885..6593425 | 316..860 | 98 | | Plus |
BS01450.5prime Sequence
715 bp (714 high quality bases) assembled on 2005-11-29
> BS01450.5prime
GAAGTTATCAGTCGACATGTCGAAGGAGGATAAGGAAAAGACACAGATCA
TCGACAAGGACCTGGACCTGTCCAATGCTGGGCGAGGCGTATGGCTGGTG
AAGGTGCCCAAGTACATTGCCCAGAAATGGGAGAAGGCGCCGACGAACAT
GGACGTGGGCAAGCTCCGGATAAACAAGACACCTGGCCAAAAGGCCCAGG
TCTCGCTTTCCCTCACGCCCGCCGTTTTGGCTCTAGATCCCGAGGAGAAA
ATACCCACCGAGCACATCCTGGACGTGTCGCAGGTCACCAAGCAGACGCT
CGGCGTATTCTCGCACATGGCACCGTCCGATGGCAAGGAGAACTCGACTA
CCTCGGCGGCACAGCCGGATAACGAAAAGTTGTATATGGAGGGCAGGATT
GTGCAAAAGCTAGAGTGCCGACCCATCGCCGACAACTGCTACATGAAACT
AAAGCTGGAGTCCATACGCAAGGCATCGGAACCACAGCGACGTGTGCAGC
CTATCGACAAAATCGTGCAGAACTTTAAGCCTGTAAAAGACCACGCACAC
AACATTGAATATCGGGAGCGAAAGAAGGCCGAGGGCAAGAAGGCGCGCGA
CGACAAGAATGCCGTGATGGATATGCTCTTCCACGCATTCGAGAAGCATC
AATACTATAACATCAAGGATCTGGTCAAGATCACCAACCAGCCGATTAGC
TACCTGAAGGAGATT
BS01450.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6538-PA | 834 | TfIIFbeta-RA | 1..699 | 17..715 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:36:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIFbeta-RA | 1118 | CG6538-RA | 106..804 | 17..715 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10767163..10767699 | 553..17 | 2685 | 100 | Minus |
3R | 32079331 | 3R | 10766936..10767097 | 715..554 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:36:55 has no hits.
BS01450.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:28 Download gff for
BS01450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6538-PA | 1..699 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:35 Download gff for
BS01450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6538-PA | 1..699 | 17..715 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:21:49 Download gff for
BS01450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFbeta-RA | 98..804 | 9..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:07:20 Download gff for
BS01450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFbeta-RA | 98..804 | 9..715 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:07:20 Download gff for
BS01450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10766936..10767097 | 554..715 | 100 | <- | Minus |
3R | 10767163..10767703 | 9..553 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:21:49 Download gff for
BS01450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6592658..6592819 | 554..715 | 100 | <- | Minus |
arm_3R | 6592885..6593425 | 9..553 | 99 | | Minus |
BS01450.complete Sequence
868 bp (868 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634614
> BS01450.complete
GAAGTTATCAGTCGACATGTCGAAGGAGGATAAGGAAAAGACACAGATCA
TCGACAAGGACCTGGACCTGTCCAATGCTGGGCGAGGCGTATGGCTGGTG
AAGGTGCCCAAGTACATTGCCCAGAAATGGGAGAAGGCGCCGACGAACAT
GGACGTGGGCAAGCTCCGGATAAACAAGACACCTGGCCAAAAGGCCCAGG
TCTCGCTTTCCCTCACGCCCGCCGTTTTGGCTCTAGATCCCGAGGAGAAA
ATACCCACCGAGCACATCCTGGACGTGTCGCAGGTCACCAAGCAGACGCT
CGGCGTATTCTCGCACATGGCACCGTCCGATGGCAAGGAGAACTCGACTA
CCTCGGCGGCACAGCCGGATAACGAAAAGTTGTATATGGAGGGCAGGATT
GTGCAAAAGCTAGAGTGCCGACCCATCGCCGACAACTGCTACATGAAACT
AAAGCTGGAGTCCATACGCAAGGCATCGGAACCACAGCGACGTGTGCAGC
CTATCGACAAAATCGTGCAGAACTTTAAGCCTGTAAAAGACCACGCACAC
AACATTGAATATCGGGAGCGAAAGAAGGCCGAGGGCAAGAAGGCGCGCGA
CGACAAGAATGCCGTGATGGATATGCTCTTCCACGCATTCGAGAAGCATC
AATACTATAACATCAAGGATCTGGTCAAGATCACCAACCAGCCGATTAGC
TACCTGAAGGAGATTCTCAAGGATGTCTGCGATTACAATATGAAGAACCC
GCACAAGAACATGTGGGAGCTCAAGAAAGAATATCGCCACTACAAGACTG
AAGAGAAGAAAGAGGAGGAGCACAAGTCAGGCAGCAGCGACTCGGAGTAG
CGAAGCTTTCTAGACCAT
BS01450.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIFbeta-RA | 834 | CG6538-PA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIFbeta-RA | 1118 | CG6538-RA | 106..940 | 17..851 | 4175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10767163..10767699 | 553..17 | 2685 | 100 | Minus |
3R | 32079331 | 3R | 10766800..10767097 | 851..554 | 1490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:45:39 has no hits.
BS01450.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:15 Download gff for
BS01450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFbeta-RA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:13 Download gff for
BS01450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFbeta-RA | 240..1085 | 9..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:37 Download gff for
BS01450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFbeta-RA | 106..940 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:15 Download gff for
BS01450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFbeta-RA | 240..1085 | 9..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:11 Download gff for
BS01450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfIIFbeta-RA | 106..940 | 17..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:11 Download gff for
BS01450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10766799..10767097 | 554..852 | 99 | <- | Minus |
3R | 10767163..10767699 | 17..553 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:37 Download gff for
BS01450.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6592521..6592819 | 554..852 | 99 | <- | Minus |
arm_3R | 6592885..6593421 | 17..553 | 100 | | Minus |
BS01450.pep Sequence
Translation from 16 to 849
> BS01450.pep
MSKEDKEKTQIIDKDLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKL
RINKTPGQKAQVSLSLTPAVLALDPEEKIPTEHILDVSQVTKQTLGVFSH
MAPSDGKENSTTSAAQPDNEKLYMEGRIVQKLECRPIADNCYMKLKLESI
RKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKKARDDKNAV
MDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKNMW
ELKKEYRHYKTEEKKEEEHKSGSSDSE*
BS01450.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfIIFbeta-PA | 277 | CG6538-PA | 1..277 | 1..277 | 1453 | 100 | Plus |