Clone BS01450 Report

Search the DGRC for BS01450

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:14
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptTfIIFbeta-RA
Protein status:BS01450.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01450.3prime Sequence

865 bp (724 high quality bases) assembled on 2005-11-29

> BS01450.3prime
ATGGTCTAGAAAGCTTCGCTACTCCGAGTCGCTGCTGCCTGACTTGTGCT
CCTCCTCTTTCTTCTCTTCAGTCTTGTAGTGGCGATATTCTTTCTTGAGC
TCCCACATGTTCTTGTGCGGGTTCTTCATATTGTAATCGCAGACATCCTT
GAGAATCTCCTTCAGGTAGCTAATCGGCTGGTTGGTGATCTTGACCAGAT
CCTTGATGTTATAGTATTGATGCTTCTCGAATGCGTGGAAGAGCATATCC
ATCACGGCATTCTTGTCGTCGCGCGCCTTCTTGCCCTCGGCCTTCTTTCG
CTCCCGATATTCAATGTTGTGTGCGTGGTCTTTTACAGGCTTAAAGTTCT
GCACGATTTTGTCGATAGGCTGCACACGTCGCTGTGGTTCCGATGCCTTG
CGTATGGACTCCAGCTTTAGTTTCATGTAGCAGTTGTCGGCGATGGGTCG
GCACTCTAGCTTTTGCACAATCCTGCCCTCCATATACAACTTTTCGTTAT
CCGGCTGTGCCGCCGAGGTAGTCGAGTTCTCCTTGCCATCGGACGGTGCC
ATGTGCGAGAATACGCCGAGCGTCTGCTTGGTGACCTGCGACACGTCCAG
GATGTGCTCGGTGGGTATTTTCTCCTCGGGATCTAGAGCCAAAACGGCGG
GCGTGAGGGAAAGCGAGACCTGNGCCTTTTGGCCAGGTGTCTTGTTTATC
CGGAGCTTGCCCACGTCCATGTTCGTCGGCGCCTTCTCCCATTTCTGGGG
CATGTACTTGGGCACCTTCACCAGCCATACGCCTCGCCCAGCATTGGACA
GGTCCCAGTCCTTGTCGATGATCTGTGTCTTTTCCTTATCCTCTTTCGAC
ATGTCGACTGATAAC

BS01450.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6538-PA 834 TfIIFbeta-RA 1..834 852..19 4026 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIFbeta-RA 1118 CG6538-RA 106..940 852..18 4089 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10767163..10767699 316..852 2599 98.9 Plus
3R 32079331 3R 10766800..10767097 18..315 1490 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:22:26 has no hits.

BS01450.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:27 Download gff for BS01450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6538-PA 1..834 19..852 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:34 Download gff for BS01450.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6538-PA 1..834 19..852 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:40:56 Download gff for BS01450.3prime
Subject Subject Range Query Range Percent Splice Strand
TfIIFbeta-RA 98..943 11..860 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:37:17 Download gff for BS01450.3prime
Subject Subject Range Query Range Percent Splice Strand
TfIIFbeta-RA 98..943 11..860 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:37:17 Download gff for BS01450.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10766797..10767097 11..315 98 <- Plus
3R 10767163..10767703 316..860 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:40:56 Download gff for BS01450.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6592519..6592819 11..315 98 <- Plus
arm_3R 6592885..6593425 316..860 98   Plus

BS01450.5prime Sequence

715 bp (714 high quality bases) assembled on 2005-11-29

> BS01450.5prime
GAAGTTATCAGTCGACATGTCGAAGGAGGATAAGGAAAAGACACAGATCA
TCGACAAGGACCTGGACCTGTCCAATGCTGGGCGAGGCGTATGGCTGGTG
AAGGTGCCCAAGTACATTGCCCAGAAATGGGAGAAGGCGCCGACGAACAT
GGACGTGGGCAAGCTCCGGATAAACAAGACACCTGGCCAAAAGGCCCAGG
TCTCGCTTTCCCTCACGCCCGCCGTTTTGGCTCTAGATCCCGAGGAGAAA
ATACCCACCGAGCACATCCTGGACGTGTCGCAGGTCACCAAGCAGACGCT
CGGCGTATTCTCGCACATGGCACCGTCCGATGGCAAGGAGAACTCGACTA
CCTCGGCGGCACAGCCGGATAACGAAAAGTTGTATATGGAGGGCAGGATT
GTGCAAAAGCTAGAGTGCCGACCCATCGCCGACAACTGCTACATGAAACT
AAAGCTGGAGTCCATACGCAAGGCATCGGAACCACAGCGACGTGTGCAGC
CTATCGACAAAATCGTGCAGAACTTTAAGCCTGTAAAAGACCACGCACAC
AACATTGAATATCGGGAGCGAAAGAAGGCCGAGGGCAAGAAGGCGCGCGA
CGACAAGAATGCCGTGATGGATATGCTCTTCCACGCATTCGAGAAGCATC
AATACTATAACATCAAGGATCTGGTCAAGATCACCAACCAGCCGATTAGC
TACCTGAAGGAGATT

BS01450.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6538-PA 834 TfIIFbeta-RA 1..699 17..715 3495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIFbeta-RA 1118 CG6538-RA 106..804 17..715 3495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:36:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10767163..10767699 553..17 2685 100 Minus
3R 32079331 3R 10766936..10767097 715..554 810 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:36:55 has no hits.

BS01450.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:28 Download gff for BS01450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6538-PA 1..699 17..715 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:35 Download gff for BS01450.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6538-PA 1..699 17..715 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:21:49 Download gff for BS01450.5prime
Subject Subject Range Query Range Percent Splice Strand
TfIIFbeta-RA 98..804 9..715 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:07:20 Download gff for BS01450.5prime
Subject Subject Range Query Range Percent Splice Strand
TfIIFbeta-RA 98..804 9..715 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:07:20 Download gff for BS01450.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10766936..10767097 554..715 100 <- Minus
3R 10767163..10767703 9..553 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:21:49 Download gff for BS01450.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6592658..6592819 554..715 100 <- Minus
arm_3R 6592885..6593425 9..553 99   Minus

BS01450.complete Sequence

868 bp (868 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634614

> BS01450.complete
GAAGTTATCAGTCGACATGTCGAAGGAGGATAAGGAAAAGACACAGATCA
TCGACAAGGACCTGGACCTGTCCAATGCTGGGCGAGGCGTATGGCTGGTG
AAGGTGCCCAAGTACATTGCCCAGAAATGGGAGAAGGCGCCGACGAACAT
GGACGTGGGCAAGCTCCGGATAAACAAGACACCTGGCCAAAAGGCCCAGG
TCTCGCTTTCCCTCACGCCCGCCGTTTTGGCTCTAGATCCCGAGGAGAAA
ATACCCACCGAGCACATCCTGGACGTGTCGCAGGTCACCAAGCAGACGCT
CGGCGTATTCTCGCACATGGCACCGTCCGATGGCAAGGAGAACTCGACTA
CCTCGGCGGCACAGCCGGATAACGAAAAGTTGTATATGGAGGGCAGGATT
GTGCAAAAGCTAGAGTGCCGACCCATCGCCGACAACTGCTACATGAAACT
AAAGCTGGAGTCCATACGCAAGGCATCGGAACCACAGCGACGTGTGCAGC
CTATCGACAAAATCGTGCAGAACTTTAAGCCTGTAAAAGACCACGCACAC
AACATTGAATATCGGGAGCGAAAGAAGGCCGAGGGCAAGAAGGCGCGCGA
CGACAAGAATGCCGTGATGGATATGCTCTTCCACGCATTCGAGAAGCATC
AATACTATAACATCAAGGATCTGGTCAAGATCACCAACCAGCCGATTAGC
TACCTGAAGGAGATTCTCAAGGATGTCTGCGATTACAATATGAAGAACCC
GCACAAGAACATGTGGGAGCTCAAGAAAGAATATCGCCACTACAAGACTG
AAGAGAAGAAAGAGGAGGAGCACAAGTCAGGCAGCAGCGACTCGGAGTAG
CGAAGCTTTCTAGACCAT

BS01450.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIFbeta-RA 834 CG6538-PA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIFbeta-RA 1118 CG6538-RA 106..940 17..851 4175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10767163..10767699 553..17 2685 100 Minus
3R 32079331 3R 10766800..10767097 851..554 1490 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:45:39 has no hits.

BS01450.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:15 Download gff for BS01450.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIFbeta-RA 1..834 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:13 Download gff for BS01450.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIFbeta-RA 240..1085 9..858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:37 Download gff for BS01450.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIFbeta-RA 106..940 17..852 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:15 Download gff for BS01450.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIFbeta-RA 240..1085 9..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:11 Download gff for BS01450.complete
Subject Subject Range Query Range Percent Splice Strand
TfIIFbeta-RA 106..940 17..852 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:11 Download gff for BS01450.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10766799..10767097 554..852 99 <- Minus
3R 10767163..10767699 17..553 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:37 Download gff for BS01450.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6592521..6592819 554..852 99 <- Minus
arm_3R 6592885..6593421 17..553 100   Minus

BS01450.pep Sequence

Translation from 16 to 849

> BS01450.pep
MSKEDKEKTQIIDKDLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKL
RINKTPGQKAQVSLSLTPAVLALDPEEKIPTEHILDVSQVTKQTLGVFSH
MAPSDGKENSTTSAAQPDNEKLYMEGRIVQKLECRPIADNCYMKLKLESI
RKASEPQRRVQPIDKIVQNFKPVKDHAHNIEYRERKKAEGKKARDDKNAV
MDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKNMW
ELKKEYRHYKTEEKKEEEHKSGSSDSE*

BS01450.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
TfIIFbeta-PA 277 CG6538-PA 1..277 1..277 1453 100 Plus