Clone BS01456 Report

Search the DGRC for BS01456

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:14
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptPop2-RB
Protein status:BS01456.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01456.3prime Sequence

822 bp (811 high quality bases) assembled on 2005-11-29

> BS01456.3prime
ATGGTCTAGAAAGCTTCGTCATGAAGCGCTGTTCGTCTCACCGTTGCTGT
CGTGGAAGTTGGTGCCATTGACGATGAAGGAGGTACCCAGGCCGTACAGG
TGTCCGGAGTACTTCGCATGGTCGATGTTGTCCTCGAAGAACATCTCACG
CATTTTGAAGAAGGCCATGCCCGTCAGCAGAGCATCCGAGCCGGCCTGAT
GCTGGGGGCCCACGCGCCGCAGTTCCAGCTGATCGGCAACCTCCTGCAGG
CCGCCTTTCAGGTTCTTGCACGACTTCATCAGATACTTGATGTCGAAGAT
GTTGGGAAAGTAGATGTGCAGCAGATCGAAAAATTCAGATTCGTCCGGGG
GCAGGTTCTGATCGGTGAGCAGCTTTAGAAGGTAGCCAAAATCGTAGCCG
GAGTGGAAGCACAGCCACTTGATGTTTTCCACCAGCACGATGCCAGAGCT
CATCAGCAGTTCGGCGAAGTCGATGGGATCGATGCCATCCTCCTCGTGCT
TCTTGAACTGAATTCCGGAGTTCTGCAGCAGATCGATCGAGTCCTGCGCA
TACATGTCCTCGCTCAGGTTAAACTTGAAGTTGAACTGCCAGGTGGAGTA
GCCGGGTGGTGTCTTTCCATCGTCGTCCATGAAGGTAAGGCCCAATTGGA
TAATCCGCAGCAGATCGACATTACAGCGCAGCAGCTGGTAATGATAGTCC
GCCGTGGAGCGGAACTCGCCGACTGGACGTGCTACCACGCCTGGAAACTC
GGTGTCCATGGNCACATAGTGGTACTTCTGCACCACTTTCCGTATGGTGC
GGAACTCCTCCTCCCAGTTTTG

BS01456.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5684-PC 882 CG5684-RC 87..882 814..19 3961 99.8 Minus
CG5684-PA 894 CG5684-RA 99..894 814..19 3961 99.8 Minus
CG5684-PB 882 CG5684-RB 87..882 814..19 3961 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
Pop2-RB 1893 CG5684-RB 617..1420 822..19 3979 99.6 Minus
Pop2-RA 1688 CG5684-RA 412..1215 822..19 3979 99.6 Minus
Pop2-RC 1827 CG5684-RC 551..1354 822..19 3979 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:53:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12000273..12000692 145..564 2100 100 Plus
3L 28110227 3L 12000750..12001009 563..822 1259 98.8 Plus
3L 28110227 3L 11998871..11998998 19..146 640 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:53:48 has no hits.

BS01456.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:31 Download gff for BS01456.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5684-PC 79..882 19..822 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:39 Download gff for BS01456.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5684-PB 79..882 19..822 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:29:57 Download gff for BS01456.3prime
Subject Subject Range Query Range Percent Splice Strand
Pop2-RC 551..1362 12..822 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:16 Download gff for BS01456.3prime
Subject Subject Range Query Range Percent Splice Strand
Pop2-RC 551..1362 12..822 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:16 Download gff for BS01456.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12000750..12001009 563..822 98   Plus
3L 11998863..11998996 12..144 97 <- Plus
3L 12000273..12000690 145..562 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:29:57 Download gff for BS01456.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11991963..11992096 12..144 97 <- Plus
arm_3L 11993373..11993790 145..562 100 <- Plus
arm_3L 11993850..11994109 563..822 98   Plus

BS01456.5prime Sequence

869 bp (702 high quality bases) assembled on 2005-11-29

> BS01456.5prime
GAAGTTATCAGTCGACATGCCCTCGGCCATCAGTGGCGCGCCACATGCCC
ACATACCCAGCAACGAGGAGTGCGGCATCCGCGATGTGTGGAAGCAAAAC
CTGGAGGAGGAGTTCCGCACCATACGGAAAGTGGTGCAGAAGTACCACTA
TGTGGCCATGGACACCGAGTTTCCAGGCGTGGTAGCACGTCCAGTCGGCG
AGTTCCGCTCCACGGCGGACTATCATTACCAGCTGCTGCGCTGTAATGTC
GATCTGCTGCGGATTATCCAATTGGGCCTTACCTTCATGGACGACGATGG
AAAGACACCACCCGGCTACTCCACCTGGCAGTTCAACTTCAAGTTTAACC
TGAGCGAGGACATGTATGCGCAGGACTCGATCGATCTGCTGCAGAACTCC
GGAATTCAGTTCAAGAAGCACGAGGAGGATGGCATCGATCCCATCGACTT
CGCCGAACTGCTGATGAGCTCTGGCATCGTGCTGGTGGAAAACATCAAGT
GGCTGTGCTTCCACTCCGGCTACGATTTTGGCTACCTTCTAAAGCTGCTC
ACCGATCAGAACCTGCCCCCGGACGAATCTGAATTTTTCGATCTGCTGCA
CATCTACTTTCCCAACATCTTCGACATCAAGTATCTGATGAAGTCGTGCA
AGAACCTGAAAGGCGGCCTGCAGGAGGTTGCCGATCAGCTGGAACTGCGG
CGCGTGGGCCCCCAGCATCAGGCCGGCTCGGATGCTCTGCTGACGGGCAT
GGCCTTCTTCAAAATGCGTGAGATGTTCTTCGAGGGACACATCGACCATG
CGAAGTACTCCGGACACCTGTACGGCCTGGGTACCTCCTTCATCGTCAAT
GGCACCAACTTCACGACAG

BS01456.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5684-PC 882 CG5684-RC 1..769 17..785 3845 100 Plus
CG5684-PA 894 CG5684-RA 13..781 17..785 3845 100 Plus
CG5684-PB 882 CG5684-RB 1..769 17..785 3845 100 Plus
CG5684-PC 882 CG5684-RC 773..846 789..862 370 100 Plus
CG5684-PA 894 CG5684-RA 785..858 789..862 370 100 Plus
CG5684-PB 882 CG5684-RB 773..846 789..862 370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
Pop2-RB 1893 CG5684-RB 539..1392 17..869 4200 99.6 Plus
Pop2-RA 1688 CG5684-RA 334..1187 17..869 4200 99.6 Plus
Pop2-RC 1827 CG5684-RC 473..1326 17..869 4200 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12000273..12000692 772..353 2100 100 Minus
3L 28110227 3L 12000750..12001087 354..17 1690 100 Minus
3L 28110227 3L 11998907..11998998 862..771 415 96.7 Minus
Blast to na_te.dros performed on 2015-02-11 23:34:46 has no hits.

BS01456.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:33 Download gff for BS01456.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5684-PC 1..854 17..869 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:40 Download gff for BS01456.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5684-PB 1..854 17..869 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:08:50 Download gff for BS01456.5prime
Subject Subject Range Query Range Percent Splice Strand
Pop2-RC 473..1326 17..869 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:03 Download gff for BS01456.5prime
Subject Subject Range Query Range Percent Splice Strand
Pop2-RC 473..1326 17..869 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:03 Download gff for BS01456.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11998899..11998996 773..869 96 <- Minus
3L 12000273..12000690 355..772 100 <- Minus
3L 12000750..12001090 14..354 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:08:50 Download gff for BS01456.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11991999..11992096 773..869 96 <- Minus
arm_3L 11993373..11993790 355..772 100 <- Minus
arm_3L 11993850..11994190 14..354 99 <- Minus

BS01456.complete Sequence

916 bp (916 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634615

> BS01456.complete
GAAGTTATCAGTCGACATGCCCTCGGCCATCAGTGGCGCGCCACATGCCC
ACATACCCAGCAACGAGGAGTGCGGCATCCGCGATGTGTGGAAGCAAAAC
CTGGAGGAGGAGTTCCGCACCATACGGAAAGTGGTGCAGAAGTACCACTA
TGTGGCCATGGACACCGAGTTTCCAGGCGTGGTAGCACGTCCAGTCGGCG
AGTTCCGCTCCACGGCGGACTATCATTACCAGCTGCTGCGCTGTAATGTC
GATCTGCTGCGGATTATCCAATTGGGCCTTACCTTCATGGACGACGATGG
AAAGACACCACCCGGCTACTCCACCTGGCAGTTCAACTTCAAGTTTAACC
TGAGCGAGGACATGTATGCGCAGGACTCGATCGATCTGCTGCAGAACTCC
GGAATTCAGTTCAAGAAGCACGAGGAGGATGGCATCGATCCCATCGACTT
CGCCGAACTGCTGATGAGCTCTGGCATCGTGCTGGTGGAAAACATCAAGT
GGCTGTGCTTCCACTCCGGCTACGATTTTGGCTACCTTCTAAAGCTGCTC
ACCGATCAGAACCTGCCCCCGGACGAATCTGAATTTTTCGATCTGCTGCA
CATCTACTTTCCCAACATCTTCGACATCAAGTATCTGATGAAGTCGTGCA
AGAACCTGAAAGGCGGCCTGCAGGAGGTTGCCGATCAGCTGGAACTGCGG
CGCGTGGGCCCCCAGCATCAGGCCGGCTCGGATGCTCTGCTGACGGGCAT
GGCCTTCTTCAAAATGCGTGAGATGTTCTTCGAGGACAACATCGACCATG
CGAAGTACTCCGGACACCTGTACGGCCTGGGTACCTCCTTCATCGTCAAT
GGCACCAACTTCCACGACAGCAACGGTGAGACGAACAGCGCTTCATGACG
AAGCTTTCTAGACCAT

BS01456.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
Pop2-RB 882 CG5684-PB 1..882 17..898 4410 100 Plus
Pop2-RA 894 CG5684-PA 13..894 17..898 4410 100 Plus
Pop2-RC 882 CG5684-PC 1..882 17..898 4410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
Pop2-RB 1893 CG5684-RB 539..1420 17..898 4410 100 Plus
Pop2-RA 1688 CG5684-RA 334..1215 17..898 4410 100 Plus
Pop2-RC 1827 CG5684-RC 473..1354 17..898 4410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12000273..12000692 772..353 2100 100 Minus
3L 28110227 3L 12000750..12001087 354..17 1690 100 Minus
3L 28110227 3L 11998871..11998998 898..771 640 100 Minus
Blast to na_te.dros performed on 2014-11-28 07:53:30 has no hits.

BS01456.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:16 Download gff for BS01456.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RB 1..882 17..898 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:28 Download gff for BS01456.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RB 537..1418 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:31 Download gff for BS01456.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RC 473..1354 17..900 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:16 Download gff for BS01456.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RB 537..1426 17..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:11 Download gff for BS01456.complete
Subject Subject Range Query Range Percent Splice Strand
Pop2-RC 473..1354 17..900 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:11 Download gff for BS01456.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12000750..12001087 17..354 100   Minus
3L 11998867..11998996 773..900 98 <- Minus
3L 12000273..12000690 355..772 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:31 Download gff for BS01456.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11993850..11994187 17..354 100   Minus
arm_3L 11991967..11992096 773..900 98 <- Minus
arm_3L 11993373..11993790 355..772 100 <- Minus

BS01456.pep Sequence

Translation from 16 to 897

> BS01456.pep
MPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDT
EFPGVVARPVGEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGKTPPG
YSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFAELLM
SSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHIYFPN
IFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMAFFKM
REMFFEDNIDHAKYSGHLYGLGTSFIVNGTNFHDSNGETNSAS*

BS01456.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
Pop2-PB 293 CG5684-PB 1..293 1..293 1568 100 Plus
Pop2-PC 293 CG5684-PC 1..293 1..293 1568 100 Plus
Pop2-PA 297 CG5684-PA 5..297 1..293 1568 100 Plus
Pop2-PD 357 CG5684-PD 1..253 1..253 1346 99.6 Plus
Pop2-PE 361 CG5684-PE 5..257 1..253 1346 99.6 Plus