Clone Sequence Records
BS01456.3prime Sequence
822 bp (811 high quality bases) assembled on 2005-11-29
> BS01456.3prime
ATGGTCTAGAAAGCTTCGTCATGAAGCGCTGTTCGTCTCACCGTTGCTGT
CGTGGAAGTTGGTGCCATTGACGATGAAGGAGGTACCCAGGCCGTACAGG
TGTCCGGAGTACTTCGCATGGTCGATGTTGTCCTCGAAGAACATCTCACG
CATTTTGAAGAAGGCCATGCCCGTCAGCAGAGCATCCGAGCCGGCCTGAT
GCTGGGGGCCCACGCGCCGCAGTTCCAGCTGATCGGCAACCTCCTGCAGG
CCGCCTTTCAGGTTCTTGCACGACTTCATCAGATACTTGATGTCGAAGAT
GTTGGGAAAGTAGATGTGCAGCAGATCGAAAAATTCAGATTCGTCCGGGG
GCAGGTTCTGATCGGTGAGCAGCTTTAGAAGGTAGCCAAAATCGTAGCCG
GAGTGGAAGCACAGCCACTTGATGTTTTCCACCAGCACGATGCCAGAGCT
CATCAGCAGTTCGGCGAAGTCGATGGGATCGATGCCATCCTCCTCGTGCT
TCTTGAACTGAATTCCGGAGTTCTGCAGCAGATCGATCGAGTCCTGCGCA
TACATGTCCTCGCTCAGGTTAAACTTGAAGTTGAACTGCCAGGTGGAGTA
GCCGGGTGGTGTCTTTCCATCGTCGTCCATGAAGGTAAGGCCCAATTGGA
TAATCCGCAGCAGATCGACATTACAGCGCAGCAGCTGGTAATGATAGTCC
GCCGTGGAGCGGAACTCGCCGACTGGACGTGCTACCACGCCTGGAAACTC
GGTGTCCATGGNCACATAGTGGTACTTCTGCACCACTTTCCGTATGGTGC
GGAACTCCTCCTCCCAGTTTTG
BS01456.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5684-PC | 882 | CG5684-RC | 87..882 | 814..19 | 3961 | 99.8 | Minus |
CG5684-PA | 894 | CG5684-RA | 99..894 | 814..19 | 3961 | 99.8 | Minus |
CG5684-PB | 882 | CG5684-RB | 87..882 | 814..19 | 3961 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:53:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-RB | 1893 | CG5684-RB | 617..1420 | 822..19 | 3979 | 99.6 | Minus |
Pop2-RA | 1688 | CG5684-RA | 412..1215 | 822..19 | 3979 | 99.6 | Minus |
Pop2-RC | 1827 | CG5684-RC | 551..1354 | 822..19 | 3979 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:53:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12000273..12000692 | 145..564 | 2100 | 100 | Plus |
3L | 28110227 | 3L | 12000750..12001009 | 563..822 | 1259 | 98.8 | Plus |
3L | 28110227 | 3L | 11998871..11998998 | 19..146 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:53:48 has no hits.
BS01456.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:31 Download gff for
BS01456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5684-PC | 79..882 | 19..822 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:39 Download gff for
BS01456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5684-PB | 79..882 | 19..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:29:57 Download gff for
BS01456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RC | 551..1362 | 12..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:11:16 Download gff for
BS01456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RC | 551..1362 | 12..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:11:16 Download gff for
BS01456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12000750..12001009 | 563..822 | 98 | | Plus |
3L | 11998863..11998996 | 12..144 | 97 | <- | Plus |
3L | 12000273..12000690 | 145..562 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:29:57 Download gff for
BS01456.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11991963..11992096 | 12..144 | 97 | <- | Plus |
arm_3L | 11993373..11993790 | 145..562 | 100 | <- | Plus |
arm_3L | 11993850..11994109 | 563..822 | 98 | | Plus |
BS01456.5prime Sequence
869 bp (702 high quality bases) assembled on 2005-11-29
> BS01456.5prime
GAAGTTATCAGTCGACATGCCCTCGGCCATCAGTGGCGCGCCACATGCCC
ACATACCCAGCAACGAGGAGTGCGGCATCCGCGATGTGTGGAAGCAAAAC
CTGGAGGAGGAGTTCCGCACCATACGGAAAGTGGTGCAGAAGTACCACTA
TGTGGCCATGGACACCGAGTTTCCAGGCGTGGTAGCACGTCCAGTCGGCG
AGTTCCGCTCCACGGCGGACTATCATTACCAGCTGCTGCGCTGTAATGTC
GATCTGCTGCGGATTATCCAATTGGGCCTTACCTTCATGGACGACGATGG
AAAGACACCACCCGGCTACTCCACCTGGCAGTTCAACTTCAAGTTTAACC
TGAGCGAGGACATGTATGCGCAGGACTCGATCGATCTGCTGCAGAACTCC
GGAATTCAGTTCAAGAAGCACGAGGAGGATGGCATCGATCCCATCGACTT
CGCCGAACTGCTGATGAGCTCTGGCATCGTGCTGGTGGAAAACATCAAGT
GGCTGTGCTTCCACTCCGGCTACGATTTTGGCTACCTTCTAAAGCTGCTC
ACCGATCAGAACCTGCCCCCGGACGAATCTGAATTTTTCGATCTGCTGCA
CATCTACTTTCCCAACATCTTCGACATCAAGTATCTGATGAAGTCGTGCA
AGAACCTGAAAGGCGGCCTGCAGGAGGTTGCCGATCAGCTGGAACTGCGG
CGCGTGGGCCCCCAGCATCAGGCCGGCTCGGATGCTCTGCTGACGGGCAT
GGCCTTCTTCAAAATGCGTGAGATGTTCTTCGAGGGACACATCGACCATG
CGAAGTACTCCGGACACCTGTACGGCCTGGGTACCTCCTTCATCGTCAAT
GGCACCAACTTCACGACAG
BS01456.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5684-PC | 882 | CG5684-RC | 1..769 | 17..785 | 3845 | 100 | Plus |
CG5684-PA | 894 | CG5684-RA | 13..781 | 17..785 | 3845 | 100 | Plus |
CG5684-PB | 882 | CG5684-RB | 1..769 | 17..785 | 3845 | 100 | Plus |
CG5684-PC | 882 | CG5684-RC | 773..846 | 789..862 | 370 | 100 | Plus |
CG5684-PA | 894 | CG5684-RA | 785..858 | 789..862 | 370 | 100 | Plus |
CG5684-PB | 882 | CG5684-RB | 773..846 | 789..862 | 370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-RB | 1893 | CG5684-RB | 539..1392 | 17..869 | 4200 | 99.6 | Plus |
Pop2-RA | 1688 | CG5684-RA | 334..1187 | 17..869 | 4200 | 99.6 | Plus |
Pop2-RC | 1827 | CG5684-RC | 473..1326 | 17..869 | 4200 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12000273..12000692 | 772..353 | 2100 | 100 | Minus |
3L | 28110227 | 3L | 12000750..12001087 | 354..17 | 1690 | 100 | Minus |
3L | 28110227 | 3L | 11998907..11998998 | 862..771 | 415 | 96.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:34:46 has no hits.
BS01456.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:33 Download gff for
BS01456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5684-PC | 1..854 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:40 Download gff for
BS01456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5684-PB | 1..854 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:08:50 Download gff for
BS01456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RC | 473..1326 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:03 Download gff for
BS01456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RC | 473..1326 | 17..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:03 Download gff for
BS01456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11998899..11998996 | 773..869 | 96 | <- | Minus |
3L | 12000273..12000690 | 355..772 | 100 | <- | Minus |
3L | 12000750..12001090 | 14..354 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:08:50 Download gff for
BS01456.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11991999..11992096 | 773..869 | 96 | <- | Minus |
arm_3L | 11993373..11993790 | 355..772 | 100 | <- | Minus |
arm_3L | 11993850..11994190 | 14..354 | 99 | <- | Minus |
BS01456.complete Sequence
916 bp (916 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634615
> BS01456.complete
GAAGTTATCAGTCGACATGCCCTCGGCCATCAGTGGCGCGCCACATGCCC
ACATACCCAGCAACGAGGAGTGCGGCATCCGCGATGTGTGGAAGCAAAAC
CTGGAGGAGGAGTTCCGCACCATACGGAAAGTGGTGCAGAAGTACCACTA
TGTGGCCATGGACACCGAGTTTCCAGGCGTGGTAGCACGTCCAGTCGGCG
AGTTCCGCTCCACGGCGGACTATCATTACCAGCTGCTGCGCTGTAATGTC
GATCTGCTGCGGATTATCCAATTGGGCCTTACCTTCATGGACGACGATGG
AAAGACACCACCCGGCTACTCCACCTGGCAGTTCAACTTCAAGTTTAACC
TGAGCGAGGACATGTATGCGCAGGACTCGATCGATCTGCTGCAGAACTCC
GGAATTCAGTTCAAGAAGCACGAGGAGGATGGCATCGATCCCATCGACTT
CGCCGAACTGCTGATGAGCTCTGGCATCGTGCTGGTGGAAAACATCAAGT
GGCTGTGCTTCCACTCCGGCTACGATTTTGGCTACCTTCTAAAGCTGCTC
ACCGATCAGAACCTGCCCCCGGACGAATCTGAATTTTTCGATCTGCTGCA
CATCTACTTTCCCAACATCTTCGACATCAAGTATCTGATGAAGTCGTGCA
AGAACCTGAAAGGCGGCCTGCAGGAGGTTGCCGATCAGCTGGAACTGCGG
CGCGTGGGCCCCCAGCATCAGGCCGGCTCGGATGCTCTGCTGACGGGCAT
GGCCTTCTTCAAAATGCGTGAGATGTTCTTCGAGGACAACATCGACCATG
CGAAGTACTCCGGACACCTGTACGGCCTGGGTACCTCCTTCATCGTCAAT
GGCACCAACTTCCACGACAGCAACGGTGAGACGAACAGCGCTTCATGACG
AAGCTTTCTAGACCAT
BS01456.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-RB | 882 | CG5684-PB | 1..882 | 17..898 | 4410 | 100 | Plus |
Pop2-RA | 894 | CG5684-PA | 13..894 | 17..898 | 4410 | 100 | Plus |
Pop2-RC | 882 | CG5684-PC | 1..882 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-RB | 1893 | CG5684-RB | 539..1420 | 17..898 | 4410 | 100 | Plus |
Pop2-RA | 1688 | CG5684-RA | 334..1215 | 17..898 | 4410 | 100 | Plus |
Pop2-RC | 1827 | CG5684-RC | 473..1354 | 17..898 | 4410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12000273..12000692 | 772..353 | 2100 | 100 | Minus |
3L | 28110227 | 3L | 12000750..12001087 | 354..17 | 1690 | 100 | Minus |
3L | 28110227 | 3L | 11998871..11998998 | 898..771 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:53:30 has no hits.
BS01456.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:16 Download gff for
BS01456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RB | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:28 Download gff for
BS01456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RB | 537..1418 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:31 Download gff for
BS01456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RC | 473..1354 | 17..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:16 Download gff for
BS01456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RB | 537..1426 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:11 Download gff for
BS01456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RC | 473..1354 | 17..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:11 Download gff for
BS01456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12000750..12001087 | 17..354 | 100 | | Minus |
3L | 11998867..11998996 | 773..900 | 98 | <- | Minus |
3L | 12000273..12000690 | 355..772 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:31 Download gff for
BS01456.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11993850..11994187 | 17..354 | 100 | | Minus |
arm_3L | 11991967..11992096 | 773..900 | 98 | <- | Minus |
arm_3L | 11993373..11993790 | 355..772 | 100 | <- | Minus |
BS01456.pep Sequence
Translation from 16 to 897
> BS01456.pep
MPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDT
EFPGVVARPVGEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGKTPPG
YSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFAELLM
SSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHIYFPN
IFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMAFFKM
REMFFEDNIDHAKYSGHLYGLGTSFIVNGTNFHDSNGETNSAS*
BS01456.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-PB | 293 | CG5684-PB | 1..293 | 1..293 | 1568 | 100 | Plus |
Pop2-PC | 293 | CG5684-PC | 1..293 | 1..293 | 1568 | 100 | Plus |
Pop2-PA | 297 | CG5684-PA | 5..297 | 1..293 | 1568 | 100 | Plus |
Pop2-PD | 357 | CG5684-PD | 1..253 | 1..253 | 1346 | 99.6 | Plus |
Pop2-PE | 361 | CG5684-PE | 5..257 | 1..253 | 1346 | 99.6 | Plus |