Clone Sequence Records
BS01458.3prime Sequence
844 bp (828 high quality bases) assembled on 2005-11-29
> BS01458.3prime
ATGGTCTAGAAAGCTTCGTTAGATATGGTGCCAGCGCTGCCTGCAGTTGA
AGGCGAGGTTGGCTAAGGCCTCTGCTGCTTCCAGTTCGTCCTTATGATGA
AGCATCCAGCGTCCACCACGACCAGCCCCAGACACATCTGTGGTAAAGAT
CGCTTGTCCACAACTGCTATTACTGCTAGCTTTCTGCCTGGTCATATTCC
ACTCGATGTGATAATTGTTCCTGTCCGGTGTGAATTTTGCTGCACTTTCC
AGCCACTTGTTGAGTTGCGTACCCTGTTGACTGGTCGTTTTTGCCGTGGA
ACTATCTCGCATATACTTTTCCATCATCTGATGCTTGTACTTGGTCTTAC
CCCCTGTTTGTGCTGATATCCGCTCGGTCAGACCTGCAGATCCTACAAAC
AATATCGGCTTGTATGGGGATGAAGGTTCATTATTGGCATTGCCATCGCT
ACCAGTACTGTGGCTGGAAAACTCTTCATTATCGTCGCCTTCGTCATCCT
CCGCAGGACATGAGTGCATCTCCTCCTCCCAAATGCTATCCTCCGACGAG
ATGCTAAATTGTTCCACATTACCCCTTGCATTGTGATTGTAATTTTTGAT
CAGATGGCCCCAGGATTTCTTGGCTTTCTCTCGCTCCGAGTTTTTAAGCT
TTCTTCGCCAGTTTGCAAACCAATTGCAAATCTGAGTGTAAGTAAGTCCA
GTCTCTGCAGCAAGCTGTTTTTTCTCCTCCCTGCTAGGATAGGGATTCTC
CCGGCGACGAATTAACCAGTCCTTTAGCATCCTCTTAATGTCGGGAGTAA
AATATCTCTTTGTAGCTCGGGATGCTGGATGCAACTCCTCCTCT
BS01458.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11617-PA | 885 | CG11617-RA | 60..885 | 844..19 | 4080 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:53:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11617-RB | 1290 | CG11617-RB | 164..989 | 844..19 | 4100 | 99.8 | Minus |
CG11617-RA | 1259 | CG11617-RA | 133..958 | 844..19 | 4100 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:53:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 205271..205928 | 187..844 | 3260 | 99.7 | Plus |
2L | 23513712 | 2L | 205044..205214 | 19..189 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 15:53:48 has no hits.
BS01458.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:34 Download gff for
BS01458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-PA | 60..885 | 19..844 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:42 Download gff for
BS01458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-PA | 60..885 | 19..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:17:54 Download gff for
BS01458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-RA | 133..963 | 12..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:03:38 Download gff for
BS01458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-RA | 133..963 | 12..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:03:38 Download gff for
BS01458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 205039..205212 | 12..187 | 98 | <- | Plus |
2L | 205272..205928 | 188..844 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:17:54 Download gff for
BS01458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 205039..205212 | 12..187 | 98 | <- | Plus |
arm_2L | 205272..205928 | 188..844 | 99 | | Plus |
BS01458.5prime Sequence
800 bp (679 high quality bases) assembled on 2005-11-29
> BS01458.5prime
GAAGTTATCAGTCGACATGGACAAGTCAACGCGGCCTAAACGAAATCGTC
GACACAGCAGACGAGCCTGGCCACCAGAGGAGGAGTTGCATCCAGCATCC
CGAGCTACAAAGAGATTATTTACTCCCGACATTAAGAGGATGCTAAAGGA
CTGGTTAATTCGTCGCCGGGAGAATCCCTATCCTAGCAGGGAGGAGAAAA
AACAGCTTGCTGCAGAGACTGGACTTACTTACACTCAGATTTGCAATTGG
TTTGCAAACTGGCGAAGAAAGCTTAAAAACTCGGAGCGAGAGAAAGCCAA
GAAATCCTGGGGCCATCTGATCAAAAATTACAATCACAATGCAAGGGGTA
ATGTGGAACAATTTAGCATCTCGTCGGAGGATAGCATTTGGGAGGAGGAG
ATGCACTCATGTCCTGCGGAGGATGACGAAGGCGACGATAATGAAGAGTT
TTCCAGCCACAGTACTGGTAGCGATGGCAATGCCAATAATGAACCTTCAT
CCCCATACAAGCCGATATTGTTTGTAGGATCTGCAGGTCTGACCGAGCGG
ATATCAGCACAAACAGGGGGTAAGACCAAGTACAAGCATCAGATGATGGA
AAAGTATATGCGAGATAGTTCCACGGCAAAAACGACCAGTCAACAGGGTA
CGCAACTCAACAAGTGGCTGGAAAGTGCAGCAAAATTCACACCGGACAGG
AACAATTATCACATCGAGTGGAATATGACCAGGCAGAAAGCTAGCAGTAA
TAGCAGTTGTGGACAAGCGATCTTTACCACAGATGTGTCTGGGGCTGGTC
BS01458.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11617-PA | 885 | CG11617-RA | 1..784 | 17..800 | 3920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:12:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11617-RB | 1290 | CG11617-RB | 104..888 | 16..800 | 3925 | 100 | Plus |
CG11617-RA | 1259 | CG11617-RA | 73..857 | 16..800 | 3925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:12:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 205271..205946 | 733..58 | 3380 | 100 | Minus |
2L | 23513712 | 2L | 205145..205214 | 800..731 | 350 | 100 | Minus |
2L | 23513712 | 2L | 206001..206045 | 60..16 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:12:55 has no hits.
BS01458.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:34 Download gff for
BS01458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-PA | 1..784 | 17..800 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:43 Download gff for
BS01458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-PA | 1..784 | 17..800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:42:58 Download gff for
BS01458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-RA | 73..857 | 16..800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:09 Download gff for
BS01458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-RA | 73..857 | 16..800 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:09 Download gff for
BS01458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 205145..205212 | 733..800 | 100 | <- | Minus |
2L | 205272..205943 | 61..732 | 100 | <- | Minus |
2L | 206001..206054 | 8..60 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:42:58 Download gff for
BS01458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 205145..205212 | 733..800 | 100 | <- | Minus |
arm_2L | 205272..205943 | 61..732 | 100 | <- | Minus |
arm_2L | 206001..206054 | 8..60 | 92 | | Minus |
BS01458.complete Sequence
919 bp (919 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634616
> BS01458.complete
GAAGTTATCAGTCGACATGGACAAGTCAACGCGGCCTAAACGAAATCGTC
GACACAGCAGACGAGCCTGGCCACCAGAGGAGGAGTTGCATCCAGCATCC
CGAGCTACAAAGAGATTATTTACTCCCGACATTAAGAGGATGCTAAAGGA
CTGGTTAATTCGTCGCCGGGAGAATCCCTATCCTAGCAGGGAGGAGAAAA
AACAGCTTGCTGCAGAGACTGGACTTACTTACACTCAGATTTGCAATTGG
TTTGCAAACTGGCGAAGAAAGCTTAAAAACTCGGAGCGAGAGAAAGCCAA
GAAATCCTGGGGCCATCTGATCAAAAATTACAATCACAATGCAAGGGGTA
ATGTGGAACAATTTAGCATCTCGTCGGAGGATAGCATTTGGGAGGAGGAG
ATGCACTCATGTCCTGCGGAGGATGACGAAGGCGACGATAATGAAGAGTT
TTCCAGCCACAGTACTGGTAGCGATGGCAATGCCAATAATGAACCTTCAT
CCCCATACAAGCCGATATTGTTTGTAGGATCTGCAGGTCTGACCGAGCGG
ATATCAGCACAAACAGGGGGTAAGACCAAGTACAAGCATCAGATGATGGA
AAAGTATATGCGAGATAGTTCCACGGCAAAAACGACCAGTCAACAGGGTA
CGCAACTCAACAAGTGGCTGGAAAGTGCAGCAAAATTCACACCGGACAGG
AACAATTATCACATCGAGTGGAATATGACCAGGCAGAAAGCTAGCAGTAA
TAGCAGTTGTGGACAAGCGATCTTTACCACAGATGTGTCTGGGGCTGGTC
GTGGTGGACGCTGGATGCTTCATCATAAGGACGAACTGGAAGCAGCAGAG
GCCTTAGCCAACCTCGCCTTCAACTGCAGGCAGCGCTGGCACCATATCTA
ACGAAGCTTTCTAGACCAT
BS01458.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11617-RB | 885 | CG11617-PB | 1..885 | 17..901 | 4425 | 100 | Plus |
CG11617-RA | 885 | CG11617-PA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11617-RB | 1290 | CG11617-RB | 104..989 | 16..901 | 4430 | 100 | Plus |
CG11617-RA | 1259 | CG11617-RA | 73..958 | 16..901 | 4430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 205271..205946 | 733..58 | 3380 | 100 | Minus |
2L | 23513712 | 2L | 205044..205214 | 901..731 | 855 | 100 | Minus |
2L | 23513712 | 2L | 206001..206045 | 60..16 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:39:29 has no hits.
BS01458.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:59 Download gff for
BS01458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-RA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:52 Download gff for
BS01458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-RA | 73..963 | 16..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:32 Download gff for
BS01458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-RA | 74..960 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:59 Download gff for
BS01458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-RA | 73..963 | 16..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:34 Download gff for
BS01458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11617-RA | 74..960 | 17..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:34 Download gff for
BS01458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 205042..205212 | 733..903 | 99 | <- | Minus |
2L | 205272..205943 | 61..732 | 100 | <- | Minus |
2L | 206001..206044 | 17..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:32 Download gff for
BS01458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 205042..205212 | 733..903 | 99 | <- | Minus |
arm_2L | 205272..205943 | 61..732 | 100 | <- | Minus |
arm_2L | 206001..206044 | 17..60 | 100 | | Minus |
BS01458.pep Sequence
Translation from 16 to 900
> BS01458.pep
MDKSTRPKRNRRHSRRAWPPEEELHPASRATKRLFTPDIKRMLKDWLIRR
RENPYPSREEKKQLAAETGLTYTQICNWFANWRRKLKNSEREKAKKSWGH
LIKNYNHNARGNVEQFSISSEDSIWEEEMHSCPAEDDEGDDNEEFSSHST
GSDGNANNEPSSPYKPILFVGSAGLTERISAQTGGKTKYKHQMMEKYMRD
SSTAKTTSQQGTQLNKWLESAAKFTPDRNNYHIEWNMTRQKASSNSSCGQ
AIFTTDVSGAGRGGRWMLHHKDELEAAEALANLAFNCRQRWHHI*
BS01458.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11617-PB | 294 | CG11617-PB | 1..294 | 1..294 | 1596 | 100 | Plus |
CG11617-PA | 294 | CG11617-PA | 1..294 | 1..294 | 1596 | 100 | Plus |