Clone BS01458 Report

Search the DGRC for BS01458

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:14
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG11617-RA
Protein status:BS01458.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01458.3prime Sequence

844 bp (828 high quality bases) assembled on 2005-11-29

> BS01458.3prime
ATGGTCTAGAAAGCTTCGTTAGATATGGTGCCAGCGCTGCCTGCAGTTGA
AGGCGAGGTTGGCTAAGGCCTCTGCTGCTTCCAGTTCGTCCTTATGATGA
AGCATCCAGCGTCCACCACGACCAGCCCCAGACACATCTGTGGTAAAGAT
CGCTTGTCCACAACTGCTATTACTGCTAGCTTTCTGCCTGGTCATATTCC
ACTCGATGTGATAATTGTTCCTGTCCGGTGTGAATTTTGCTGCACTTTCC
AGCCACTTGTTGAGTTGCGTACCCTGTTGACTGGTCGTTTTTGCCGTGGA
ACTATCTCGCATATACTTTTCCATCATCTGATGCTTGTACTTGGTCTTAC
CCCCTGTTTGTGCTGATATCCGCTCGGTCAGACCTGCAGATCCTACAAAC
AATATCGGCTTGTATGGGGATGAAGGTTCATTATTGGCATTGCCATCGCT
ACCAGTACTGTGGCTGGAAAACTCTTCATTATCGTCGCCTTCGTCATCCT
CCGCAGGACATGAGTGCATCTCCTCCTCCCAAATGCTATCCTCCGACGAG
ATGCTAAATTGTTCCACATTACCCCTTGCATTGTGATTGTAATTTTTGAT
CAGATGGCCCCAGGATTTCTTGGCTTTCTCTCGCTCCGAGTTTTTAAGCT
TTCTTCGCCAGTTTGCAAACCAATTGCAAATCTGAGTGTAAGTAAGTCCA
GTCTCTGCAGCAAGCTGTTTTTTCTCCTCCCTGCTAGGATAGGGATTCTC
CCGGCGACGAATTAACCAGTCCTTTAGCATCCTCTTAATGTCGGGAGTAA
AATATCTCTTTGTAGCTCGGGATGCTGGATGCAACTCCTCCTCT

BS01458.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11617-PA 885 CG11617-RA 60..885 844..19 4080 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11617-RB 1290 CG11617-RB 164..989 844..19 4100 99.8 Minus
CG11617-RA 1259 CG11617-RA 133..958 844..19 4100 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:53:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 205271..205928 187..844 3260 99.7 Plus
2L 23513712 2L 205044..205214 19..189 855 100 Plus
Blast to na_te.dros performed on 2015-02-06 15:53:48 has no hits.

BS01458.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:34 Download gff for BS01458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11617-PA 60..885 19..844 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:42 Download gff for BS01458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11617-PA 60..885 19..844 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:17:54 Download gff for BS01458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11617-RA 133..963 12..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:03:38 Download gff for BS01458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11617-RA 133..963 12..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:03:38 Download gff for BS01458.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 205039..205212 12..187 98 <- Plus
2L 205272..205928 188..844 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:17:54 Download gff for BS01458.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 205039..205212 12..187 98 <- Plus
arm_2L 205272..205928 188..844 99   Plus

BS01458.5prime Sequence

800 bp (679 high quality bases) assembled on 2005-11-29

> BS01458.5prime
GAAGTTATCAGTCGACATGGACAAGTCAACGCGGCCTAAACGAAATCGTC
GACACAGCAGACGAGCCTGGCCACCAGAGGAGGAGTTGCATCCAGCATCC
CGAGCTACAAAGAGATTATTTACTCCCGACATTAAGAGGATGCTAAAGGA
CTGGTTAATTCGTCGCCGGGAGAATCCCTATCCTAGCAGGGAGGAGAAAA
AACAGCTTGCTGCAGAGACTGGACTTACTTACACTCAGATTTGCAATTGG
TTTGCAAACTGGCGAAGAAAGCTTAAAAACTCGGAGCGAGAGAAAGCCAA
GAAATCCTGGGGCCATCTGATCAAAAATTACAATCACAATGCAAGGGGTA
ATGTGGAACAATTTAGCATCTCGTCGGAGGATAGCATTTGGGAGGAGGAG
ATGCACTCATGTCCTGCGGAGGATGACGAAGGCGACGATAATGAAGAGTT
TTCCAGCCACAGTACTGGTAGCGATGGCAATGCCAATAATGAACCTTCAT
CCCCATACAAGCCGATATTGTTTGTAGGATCTGCAGGTCTGACCGAGCGG
ATATCAGCACAAACAGGGGGTAAGACCAAGTACAAGCATCAGATGATGGA
AAAGTATATGCGAGATAGTTCCACGGCAAAAACGACCAGTCAACAGGGTA
CGCAACTCAACAAGTGGCTGGAAAGTGCAGCAAAATTCACACCGGACAGG
AACAATTATCACATCGAGTGGAATATGACCAGGCAGAAAGCTAGCAGTAA
TAGCAGTTGTGGACAAGCGATCTTTACCACAGATGTGTCTGGGGCTGGTC

BS01458.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11617-PA 885 CG11617-RA 1..784 17..800 3920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11617-RB 1290 CG11617-RB 104..888 16..800 3925 100 Plus
CG11617-RA 1259 CG11617-RA 73..857 16..800 3925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 205271..205946 733..58 3380 100 Minus
2L 23513712 2L 205145..205214 800..731 350 100 Minus
2L 23513712 2L 206001..206045 60..16 225 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:12:55 has no hits.

BS01458.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:34 Download gff for BS01458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11617-PA 1..784 17..800 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:43 Download gff for BS01458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11617-PA 1..784 17..800 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:42:58 Download gff for BS01458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11617-RA 73..857 16..800 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:09 Download gff for BS01458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11617-RA 73..857 16..800 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:09 Download gff for BS01458.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 205145..205212 733..800 100 <- Minus
2L 205272..205943 61..732 100 <- Minus
2L 206001..206054 8..60 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:42:58 Download gff for BS01458.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 205145..205212 733..800 100 <- Minus
arm_2L 205272..205943 61..732 100 <- Minus
arm_2L 206001..206054 8..60 92   Minus

BS01458.complete Sequence

919 bp (919 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634616

> BS01458.complete
GAAGTTATCAGTCGACATGGACAAGTCAACGCGGCCTAAACGAAATCGTC
GACACAGCAGACGAGCCTGGCCACCAGAGGAGGAGTTGCATCCAGCATCC
CGAGCTACAAAGAGATTATTTACTCCCGACATTAAGAGGATGCTAAAGGA
CTGGTTAATTCGTCGCCGGGAGAATCCCTATCCTAGCAGGGAGGAGAAAA
AACAGCTTGCTGCAGAGACTGGACTTACTTACACTCAGATTTGCAATTGG
TTTGCAAACTGGCGAAGAAAGCTTAAAAACTCGGAGCGAGAGAAAGCCAA
GAAATCCTGGGGCCATCTGATCAAAAATTACAATCACAATGCAAGGGGTA
ATGTGGAACAATTTAGCATCTCGTCGGAGGATAGCATTTGGGAGGAGGAG
ATGCACTCATGTCCTGCGGAGGATGACGAAGGCGACGATAATGAAGAGTT
TTCCAGCCACAGTACTGGTAGCGATGGCAATGCCAATAATGAACCTTCAT
CCCCATACAAGCCGATATTGTTTGTAGGATCTGCAGGTCTGACCGAGCGG
ATATCAGCACAAACAGGGGGTAAGACCAAGTACAAGCATCAGATGATGGA
AAAGTATATGCGAGATAGTTCCACGGCAAAAACGACCAGTCAACAGGGTA
CGCAACTCAACAAGTGGCTGGAAAGTGCAGCAAAATTCACACCGGACAGG
AACAATTATCACATCGAGTGGAATATGACCAGGCAGAAAGCTAGCAGTAA
TAGCAGTTGTGGACAAGCGATCTTTACCACAGATGTGTCTGGGGCTGGTC
GTGGTGGACGCTGGATGCTTCATCATAAGGACGAACTGGAAGCAGCAGAG
GCCTTAGCCAACCTCGCCTTCAACTGCAGGCAGCGCTGGCACCATATCTA
ACGAAGCTTTCTAGACCAT

BS01458.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11617-RB 885 CG11617-PB 1..885 17..901 4425 100 Plus
CG11617-RA 885 CG11617-PA 1..885 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11617-RB 1290 CG11617-RB 104..989 16..901 4430 100 Plus
CG11617-RA 1259 CG11617-RA 73..958 16..901 4430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 205271..205946 733..58 3380 100 Minus
2L 23513712 2L 205044..205214 901..731 855 100 Minus
2L 23513712 2L 206001..206045 60..16 225 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:39:29 has no hits.

BS01458.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:59 Download gff for BS01458.complete
Subject Subject Range Query Range Percent Splice Strand
CG11617-RA 1..885 17..901 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:52 Download gff for BS01458.complete
Subject Subject Range Query Range Percent Splice Strand
CG11617-RA 73..963 16..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:32 Download gff for BS01458.complete
Subject Subject Range Query Range Percent Splice Strand
CG11617-RA 74..960 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:59 Download gff for BS01458.complete
Subject Subject Range Query Range Percent Splice Strand
CG11617-RA 73..963 16..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:34 Download gff for BS01458.complete
Subject Subject Range Query Range Percent Splice Strand
CG11617-RA 74..960 17..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:34 Download gff for BS01458.complete
Subject Subject Range Query Range Percent Splice Strand
2L 205042..205212 733..903 99 <- Minus
2L 205272..205943 61..732 100 <- Minus
2L 206001..206044 17..60 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:32 Download gff for BS01458.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 205042..205212 733..903 99 <- Minus
arm_2L 205272..205943 61..732 100 <- Minus
arm_2L 206001..206044 17..60 100   Minus

BS01458.pep Sequence

Translation from 16 to 900

> BS01458.pep
MDKSTRPKRNRRHSRRAWPPEEELHPASRATKRLFTPDIKRMLKDWLIRR
RENPYPSREEKKQLAAETGLTYTQICNWFANWRRKLKNSEREKAKKSWGH
LIKNYNHNARGNVEQFSISSEDSIWEEEMHSCPAEDDEGDDNEEFSSHST
GSDGNANNEPSSPYKPILFVGSAGLTERISAQTGGKTKYKHQMMEKYMRD
SSTAKTTSQQGTQLNKWLESAAKFTPDRNNYHIEWNMTRQKASSNSSCGQ
AIFTTDVSGAGRGGRWMLHHKDELEAAEALANLAFNCRQRWHHI*

BS01458.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11617-PB 294 CG11617-PB 1..294 1..294 1596 100 Plus
CG11617-PA 294 CG11617-PA 1..294 1..294 1596 100 Plus