Clone Sequence Records
BS01461.3prime Sequence
767 bp (764 high quality bases) assembled on 2005-11-29
> BS01461.3prime
ATGGTCTAGAAAGCTTCGTTAGCTGGACGCGCCCAGTTGATTCTTCATAT
GGGCAGCGGCGGCGGCGGCAGCAGCAGCAGCGGCAAACGGTGAGCCACCG
CCGGTCGGTGTCTGTGGGCCATTGTTGTTGTTATTGTGATCGCCAGGGGT
GCGCGGTCCGTTGACCATGCCCACGCCATTCACATTGCCGCCACCGGGTC
CGCCGCCCAGCAATCCACCAGCTGTATTCTGCGCCCCGGCCGCTCCCGTC
GGTGAGCCCTGGCCCAAGGAGGAGACGTGTCGCTTGAGCATCGGATGATT
GGCCATCGATGCGAAGACCAGGCGCTCCTCGTAGTCGTACTCGCAGAGTA
TCTTGTTCTCGCACAGGTAGAAACGGTCGCCCACACAGAATCTGTGGTTA
CACTGCTGACAAGCGAAGCACTCCAAGTGATAGACATTGGTCCTTGCACG
CATCACCATCTCGAAGGCTGGGATCACCTTGCTGCAGGCGGCGCAGTAGC
CCGTGTTGCCAAACAATCTCAAGTAGTCCCGCTTGCAGAGCATCAGGTTG
CCCTTGGTGTAGAGCGTGGAGCCCACCTCGCCCAGGCGGCAGTCGCAGCA
GCCGCACTTGAGGCAGTCCTCGTGCCACAGCATGTCCAGNGCGCGGAGGA
GATAGCGGTCCTGGATGTGCTTGCCGCAGCCGGCGCACAATTGGCTGCCG
TTGTTGTTGTTATTGTTATTATTGTTGGCAGCGGCGGCGATGCTCTGGAC
ATTCCCGTTGCCATTGT
BS01461.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6500-PA | 942 | Bx-RA | 194..942 | 767..19 | 3651 | 99.4 | Minus |
CG6500-PB | 1155 | Bx-RB | 407..1155 | 767..19 | 3651 | 99.4 | Minus |
CG6500-PC | 942 | Bx-RC | 194..942 | 767..19 | 3651 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-RD | 2494 | CG44425-RD | 956..1704 | 767..19 | 3689 | 99.5 | Minus |
Bx-RC | 3413 | CG44425-RC | 792..1540 | 767..19 | 3689 | 99.5 | Minus |
Bx-RB | 2051 | CG44425-RB | 513..1261 | 767..19 | 3689 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18570561..18570936 | 394..19 | 1835 | 99.2 | Minus |
X | 23542271 | X | 18566889..18567138 | 767..518 | 1239 | 99.6 | Minus |
X | 23542271 | X | 18567509..18567636 | 519..392 | 640 | 100 | Minus |
Blast to na_te.dros performed 2015-01-30 16:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 2731..2802 | 762..691 | 125 | 67.1 | Minus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2627..2663 | 731..695 | 122 | 81.1 | Minus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 3142..3208 | 767..698 | 117 | 67.1 | Minus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2649..2684 | 727..692 | 108 | 77.8 | Minus |
BS01461.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:08:35 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:45 Download gff for
BS01461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6500-PC | 194..942 | 19..767 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:28:19 Download gff for
BS01461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 513..1263 | 15..767 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:53:51 Download gff for
BS01461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 513..1263 | 15..767 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:53:51 Download gff for
BS01461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18566889..18567138 | 518..767 | 99 | -> | Minus |
X | 18567511..18567636 | 392..517 | 100 | -> | Minus |
X | 18570564..18570938 | 15..391 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:28:19 Download gff for
BS01461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18460922..18461171 | 518..767 | 99 | -> | Minus |
arm_X | 18461544..18461669 | 392..517 | 100 | -> | Minus |
arm_X | 18464597..18464971 | 15..391 | 98 | | Minus |
BS01461.5prime Sequence
872 bp (737 high quality bases) assembled on 2005-11-29
> BS01461.5prime
GAAGTTATCAGTCGACATGATGACTATGGACATTACCAAAACCGAACCCG
GTCTCGTCGGGCTTTCCTCCAACCAACAGCAGCAGCAGCAGCAGCAGTCG
CAGCAAAGCAACGCCGGCATGAACAGCGGTGGCCAGAACAACGGGCCCAA
TCCCAATGGCAATGGGAACGTGGTCAATGTGGTCAACTCCGGCGGTGCCG
GTGGCGGCAACAATGGCAACGGGAATGTCCAGAGCATCGCCGCCGCTGCC
AACAATAATAACAATAACAACAACAACGGCAGCCAATTGTGCGCCGGCTG
CGGCAAGCACATCCAGGACCGCTATCTCCTCCGCGCCCTGGACATGCTGT
GGCACGAGGACTGCCTCAAGTGCGGCTGCTGCGACTGCCGCCTGGGCGAG
GTGGGCTCCACGCTCTACACCAAGGGCAACCTGATGCTCTGCAAGCGGGA
CTACTTGAGATTGTTTGGCAACACGGGCTACTGCGCCGCCTGCAGCAAGG
TGATCCCAGCCTTCGAGATGGTGATGCGTGCAAGGACCAATGTCTATCAC
TTGGAGTGCTTCGCTTGTCAGCAGTGTAACCACAGATTCTGTGTGGGCGA
CCGTTTCTACCTGTGCGAGAACAAGATACTCTGCGAGTACGACTACGAGG
AGCGCCTGGTCTTCGCATCGATGGCCAATCATCCGATGCTCAAGCGACAC
GTCTCCTCCTTGGGCCAGGGCTCACCGACGGGAGCGGCCGGGGCGCAGAA
TACAGCTGGTGGATTGCTGGGCGGCGGGACCGGTGGCGGCAATGTGAATG
GCGTGGGCATGGTCAACGGACCGCGCACCCCTGGCGATCACAATAACAAC
AACATGGCCCACAGACACCGAC
BS01461.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6500-PA | 942 | Bx-RA | 1..838 | 17..854 | 4065 | 99.4 | Plus |
CG6500-PB | 1155 | Bx-RB | 214..1051 | 17..854 | 4065 | 99.4 | Plus |
CG6500-PC | 942 | Bx-RC | 1..838 | 17..854 | 4065 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:17:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-RD | 2494 | CG44425-RD | 763..1619 | 17..872 | 4185 | 99.3 | Plus |
Bx-RC | 3413 | CG44425-RC | 599..1455 | 17..872 | 4185 | 99.3 | Plus |
Bx-RB | 2051 | CG44425-RB | 320..1176 | 17..872 | 4185 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18566696..18567138 | 17..459 | 2215 | 100 | Plus |
X | 23542271 | X | 18570561..18570851 | 583..872 | 1330 | 97.9 | Plus |
X | 23542271 | X | 18567509..18567636 | 458..585 | 640 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 06:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 2731..2802 | 215..286 | 125 | 67.1 | Plus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 3132..3208 | 200..279 | 122 | 65 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2627..2663 | 246..282 | 122 | 81.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2943..3001 | 808..866 | 115 | 66.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2430 | 184..277 | 112 | 59.6 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2649..2684 | 250..285 | 108 | 77.8 | Plus |
BS01461.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:08:37 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:45 Download gff for
BS01461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6500-PC | 1..857 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:35:19 Download gff for
BS01461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 320..1176 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:53 Download gff for
BS01461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 320..1176 | 17..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:53 Download gff for
BS01461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18566696..18567138 | 17..459 | 100 | -> | Plus |
X | 18567511..18567636 | 460..585 | 100 | -> | Plus |
X | 18570564..18570851 | 586..872 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:35:19 Download gff for
BS01461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18460729..18461171 | 17..459 | 100 | -> | Plus |
arm_X | 18461544..18461669 | 460..585 | 100 | -> | Plus |
arm_X | 18464597..18464884 | 586..872 | 97 | | Plus |
BS01461.complete Sequence
976 bp (976 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634617
> BS01461.complete
GAAGTTATCAGTCGACATGATGACTATGGACATTACCAAAACCGAACCCG
GTCTCGTCGGGCTTTCCTCCAACCAACAGCAGCAGCAGCAGCAGCAGTCG
CAGCAAAGCAACGCCGGCATGAACAGCGGTGGCCAGAACAACGGGCCCAA
TCCCAATGGCAATGGGAACGTGGTCAATGTGGTCAACTCCGGCGGTGCCG
GTGGCGGCAACAATGGCAACGGGAATGTCCAGAGCATCGCCGCCGCTGCC
AACAATAATAACAATAACAACAACAACGGCAGCCAATTGTGCGCCGGCTG
CGGCAAGCACATCCAGGACCGCTATCTCCTCCGCGCCCTGGACATGCTGT
GGCACGAGGACTGCCTCAAGTGCGGCTGCTGCGACTGCCGCCTGGGCGAG
GTGGGCTCCACGCTCTACACCAAGGGCAACCTGATGCTCTGCAAGCGGGA
CTACTTGAGATTGTTTGGCAACACGGGCTACTGCGCCGCCTGCAGCAAGG
TGATCCCAGCCTTCGAGATGGTGATGCGTGCAAGGACCAATGTCTATCAC
TTGGAGTGCTTCGCTTGTCAGCAGTGTAACCACAGATTCTGTGTGGGCGA
CCGTTTCTACCTGTGCGAGAACAAGATACTCTGCGAGTACGACTACGAGG
AGCGCCTGGTCTTCGCATCGATGGCCAATCATCCGATGCTCAAGCGACAC
GTCTCCTCCTTGGGCCAGGGCTCACCGACGGGAGCGGCCGGGGCGCAGAA
TACAGCTGGTGGATTGCTGGGCGGCGGACCCGGTGGCGGCAATGTGAATG
GCGTGGGCATGGTCAACGGACCGCGCACCCCTGGCGATCACAATAACAAC
AACAATGGCCCACAGACACCGACCGGCGGTGGCTCACCGTTTGCCGCTGC
TGCTGCTGCCGCCGCCGCCGCTGCCCATATGAAGAATCAACTGGGCGCGT
CCAGCTAACGAAGCTTTCTAGACCAT
BS01461.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-RD | 1275 | CG44425-PD | 1..942 | 17..958 | 4665 | 99.7 | Plus |
Bx-RC | 942 | CG44425-PC | 1..942 | 17..958 | 4665 | 99.7 | Plus |
Bx-RB | 1155 | CG44425-PB | 214..1155 | 17..958 | 4665 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-RD | 2494 | CG44425-RD | 763..1704 | 17..958 | 4665 | 99.7 | Plus |
Bx-RC | 3413 | CG44425-RC | 599..1540 | 17..958 | 4665 | 99.7 | Plus |
Bx-RB | 2051 | CG44425-RB | 320..1261 | 17..958 | 4665 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18566696..18567138 | 17..459 | 2215 | 100 | Plus |
X | 23542271 | X | 18570561..18570936 | 583..958 | 1835 | 99.2 | Plus |
X | 23542271 | X | 18567509..18567636 | 458..585 | 640 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 22:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 2731..2802 | 215..286 | 125 | 67.1 | Plus |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 3132..3208 | 200..279 | 122 | 65 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2627..2663 | 246..282 | 122 | 81.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2430 | 184..277 | 112 | 59.6 | Plus |
BS01461.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:00 Download gff for
BS01461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RC | 1..942 | 17..958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:53 Download gff for
BS01461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RC | 592..1540 | 9..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:39 Download gff for
BS01461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 320..1261 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:00 Download gff for
BS01461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RC | 592..1540 | 9..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:25 Download gff for
BS01461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bx-RB | 320..1261 | 17..960 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:25 Download gff for
BS01461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18570564..18570936 | 586..960 | 98 | | Plus |
X | 18566696..18567138 | 17..459 | 100 | -> | Plus |
X | 18567511..18567636 | 460..585 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:39 Download gff for
BS01461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18460729..18461171 | 17..459 | 100 | -> | Plus |
arm_X | 18461544..18461669 | 460..585 | 100 | -> | Plus |
arm_X | 18464597..18464969 | 586..960 | 98 | | Plus |
BS01461.pep Sequence
Translation from 16 to 957
> BS01461.pep
MMTMDITKTEPGLVGLSSNQQQQQQQQSQQSNAGMNSGGQNNGPNPNGNG
NVVNVVNSGGAGGGNNGNGNVQSIAAAANNNNNNNNNGSQLCAGCGKHIQ
DRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLF
GNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLC
ENKILCEYDYEERLVFASMANHPMLKRHVSSLGQGSPTGAAGAQNTAGGL
LGGGPGGGNVNGVGMVNGPRTPGDHNNNNNGPQTPTGGGSPFAAAAAAAA
AAAHMKNQLGASS*
BS01461.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bx-PC | 313 | CG44425-PC | 1..313 | 1..313 | 1709 | 100 | Plus |
Bx-PA | 313 | CG44425-PA | 1..313 | 1..313 | 1709 | 100 | Plus |
Bx-PF | 383 | CG44425-PF | 71..383 | 1..313 | 1709 | 100 | Plus |
Bx-PB | 384 | CG44425-PB | 72..384 | 1..313 | 1709 | 100 | Plus |
Bx-PD | 424 | CG44425-PD | 1..313 | 1..313 | 1709 | 100 | Plus |