Clone BS01461 Report

Search the DGRC for BS01461

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:14
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptBx-RA
Protein status:BS01461.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01461.3prime Sequence

767 bp (764 high quality bases) assembled on 2005-11-29

> BS01461.3prime
ATGGTCTAGAAAGCTTCGTTAGCTGGACGCGCCCAGTTGATTCTTCATAT
GGGCAGCGGCGGCGGCGGCAGCAGCAGCAGCGGCAAACGGTGAGCCACCG
CCGGTCGGTGTCTGTGGGCCATTGTTGTTGTTATTGTGATCGCCAGGGGT
GCGCGGTCCGTTGACCATGCCCACGCCATTCACATTGCCGCCACCGGGTC
CGCCGCCCAGCAATCCACCAGCTGTATTCTGCGCCCCGGCCGCTCCCGTC
GGTGAGCCCTGGCCCAAGGAGGAGACGTGTCGCTTGAGCATCGGATGATT
GGCCATCGATGCGAAGACCAGGCGCTCCTCGTAGTCGTACTCGCAGAGTA
TCTTGTTCTCGCACAGGTAGAAACGGTCGCCCACACAGAATCTGTGGTTA
CACTGCTGACAAGCGAAGCACTCCAAGTGATAGACATTGGTCCTTGCACG
CATCACCATCTCGAAGGCTGGGATCACCTTGCTGCAGGCGGCGCAGTAGC
CCGTGTTGCCAAACAATCTCAAGTAGTCCCGCTTGCAGAGCATCAGGTTG
CCCTTGGTGTAGAGCGTGGAGCCCACCTCGCCCAGGCGGCAGTCGCAGCA
GCCGCACTTGAGGCAGTCCTCGTGCCACAGCATGTCCAGNGCGCGGAGGA
GATAGCGGTCCTGGATGTGCTTGCCGCAGCCGGCGCACAATTGGCTGCCG
TTGTTGTTGTTATTGTTATTATTGTTGGCAGCGGCGGCGATGCTCTGGAC
ATTCCCGTTGCCATTGT

BS01461.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6500-PA 942 Bx-RA 194..942 767..19 3651 99.4 Minus
CG6500-PB 1155 Bx-RB 407..1155 767..19 3651 99.4 Minus
CG6500-PC 942 Bx-RC 194..942 767..19 3651 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
Bx-RD 2494 CG44425-RD 956..1704 767..19 3689 99.5 Minus
Bx-RC 3413 CG44425-RC 792..1540 767..19 3689 99.5 Minus
Bx-RB 2051 CG44425-RB 513..1261 767..19 3689 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18570561..18570936 394..19 1835 99.2 Minus
X 23542271 X 18566889..18567138 767..518 1239 99.6 Minus
X 23542271 X 18567509..18567636 519..392 640 100 Minus
Blast to na_te.dros performed 2015-01-30 16:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 2731..2802 762..691 125 67.1 Minus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2627..2663 731..695 122 81.1 Minus
Stalker2 7672 Stalker2 STALKER2 7672bp 3142..3208 767..698 117 67.1 Minus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2649..2684 727..692 108 77.8 Minus

BS01461.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:08:35 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:45 Download gff for BS01461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6500-PC 194..942 19..767 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:28:19 Download gff for BS01461.3prime
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 513..1263 15..767 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:53:51 Download gff for BS01461.3prime
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 513..1263 15..767 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:53:51 Download gff for BS01461.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18566889..18567138 518..767 99 -> Minus
X 18567511..18567636 392..517 100 -> Minus
X 18570564..18570938 15..391 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:28:19 Download gff for BS01461.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18460922..18461171 518..767 99 -> Minus
arm_X 18461544..18461669 392..517 100 -> Minus
arm_X 18464597..18464971 15..391 98   Minus

BS01461.5prime Sequence

872 bp (737 high quality bases) assembled on 2005-11-29

> BS01461.5prime
GAAGTTATCAGTCGACATGATGACTATGGACATTACCAAAACCGAACCCG
GTCTCGTCGGGCTTTCCTCCAACCAACAGCAGCAGCAGCAGCAGCAGTCG
CAGCAAAGCAACGCCGGCATGAACAGCGGTGGCCAGAACAACGGGCCCAA
TCCCAATGGCAATGGGAACGTGGTCAATGTGGTCAACTCCGGCGGTGCCG
GTGGCGGCAACAATGGCAACGGGAATGTCCAGAGCATCGCCGCCGCTGCC
AACAATAATAACAATAACAACAACAACGGCAGCCAATTGTGCGCCGGCTG
CGGCAAGCACATCCAGGACCGCTATCTCCTCCGCGCCCTGGACATGCTGT
GGCACGAGGACTGCCTCAAGTGCGGCTGCTGCGACTGCCGCCTGGGCGAG
GTGGGCTCCACGCTCTACACCAAGGGCAACCTGATGCTCTGCAAGCGGGA
CTACTTGAGATTGTTTGGCAACACGGGCTACTGCGCCGCCTGCAGCAAGG
TGATCCCAGCCTTCGAGATGGTGATGCGTGCAAGGACCAATGTCTATCAC
TTGGAGTGCTTCGCTTGTCAGCAGTGTAACCACAGATTCTGTGTGGGCGA
CCGTTTCTACCTGTGCGAGAACAAGATACTCTGCGAGTACGACTACGAGG
AGCGCCTGGTCTTCGCATCGATGGCCAATCATCCGATGCTCAAGCGACAC
GTCTCCTCCTTGGGCCAGGGCTCACCGACGGGAGCGGCCGGGGCGCAGAA
TACAGCTGGTGGATTGCTGGGCGGCGGGACCGGTGGCGGCAATGTGAATG
GCGTGGGCATGGTCAACGGACCGCGCACCCCTGGCGATCACAATAACAAC
AACATGGCCCACAGACACCGAC

BS01461.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6500-PA 942 Bx-RA 1..838 17..854 4065 99.4 Plus
CG6500-PB 1155 Bx-RB 214..1051 17..854 4065 99.4 Plus
CG6500-PC 942 Bx-RC 1..838 17..854 4065 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
Bx-RD 2494 CG44425-RD 763..1619 17..872 4185 99.3 Plus
Bx-RC 3413 CG44425-RC 599..1455 17..872 4185 99.3 Plus
Bx-RB 2051 CG44425-RB 320..1176 17..872 4185 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18566696..18567138 17..459 2215 100 Plus
X 23542271 X 18570561..18570851 583..872 1330 97.9 Plus
X 23542271 X 18567509..18567636 458..585 640 100 Plus
Blast to na_te.dros performed 2015-02-12 06:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 2731..2802 215..286 125 67.1 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 3132..3208 200..279 122 65 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2627..2663 246..282 122 81.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2943..3001 808..866 115 66.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2430 184..277 112 59.6 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2649..2684 250..285 108 77.8 Plus

BS01461.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:08:37 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:45 Download gff for BS01461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6500-PC 1..857 17..872 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:35:19 Download gff for BS01461.5prime
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 320..1176 17..872 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:53 Download gff for BS01461.5prime
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 320..1176 17..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:53 Download gff for BS01461.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18566696..18567138 17..459 100 -> Plus
X 18567511..18567636 460..585 100 -> Plus
X 18570564..18570851 586..872 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:35:19 Download gff for BS01461.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18460729..18461171 17..459 100 -> Plus
arm_X 18461544..18461669 460..585 100 -> Plus
arm_X 18464597..18464884 586..872 97   Plus

BS01461.complete Sequence

976 bp (976 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634617

> BS01461.complete
GAAGTTATCAGTCGACATGATGACTATGGACATTACCAAAACCGAACCCG
GTCTCGTCGGGCTTTCCTCCAACCAACAGCAGCAGCAGCAGCAGCAGTCG
CAGCAAAGCAACGCCGGCATGAACAGCGGTGGCCAGAACAACGGGCCCAA
TCCCAATGGCAATGGGAACGTGGTCAATGTGGTCAACTCCGGCGGTGCCG
GTGGCGGCAACAATGGCAACGGGAATGTCCAGAGCATCGCCGCCGCTGCC
AACAATAATAACAATAACAACAACAACGGCAGCCAATTGTGCGCCGGCTG
CGGCAAGCACATCCAGGACCGCTATCTCCTCCGCGCCCTGGACATGCTGT
GGCACGAGGACTGCCTCAAGTGCGGCTGCTGCGACTGCCGCCTGGGCGAG
GTGGGCTCCACGCTCTACACCAAGGGCAACCTGATGCTCTGCAAGCGGGA
CTACTTGAGATTGTTTGGCAACACGGGCTACTGCGCCGCCTGCAGCAAGG
TGATCCCAGCCTTCGAGATGGTGATGCGTGCAAGGACCAATGTCTATCAC
TTGGAGTGCTTCGCTTGTCAGCAGTGTAACCACAGATTCTGTGTGGGCGA
CCGTTTCTACCTGTGCGAGAACAAGATACTCTGCGAGTACGACTACGAGG
AGCGCCTGGTCTTCGCATCGATGGCCAATCATCCGATGCTCAAGCGACAC
GTCTCCTCCTTGGGCCAGGGCTCACCGACGGGAGCGGCCGGGGCGCAGAA
TACAGCTGGTGGATTGCTGGGCGGCGGACCCGGTGGCGGCAATGTGAATG
GCGTGGGCATGGTCAACGGACCGCGCACCCCTGGCGATCACAATAACAAC
AACAATGGCCCACAGACACCGACCGGCGGTGGCTCACCGTTTGCCGCTGC
TGCTGCTGCCGCCGCCGCCGCTGCCCATATGAAGAATCAACTGGGCGCGT
CCAGCTAACGAAGCTTTCTAGACCAT

BS01461.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
Bx-RD 1275 CG44425-PD 1..942 17..958 4665 99.7 Plus
Bx-RC 942 CG44425-PC 1..942 17..958 4665 99.7 Plus
Bx-RB 1155 CG44425-PB 214..1155 17..958 4665 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
Bx-RD 2494 CG44425-RD 763..1704 17..958 4665 99.7 Plus
Bx-RC 3413 CG44425-RC 599..1540 17..958 4665 99.7 Plus
Bx-RB 2051 CG44425-RB 320..1261 17..958 4665 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18566696..18567138 17..459 2215 100 Plus
X 23542271 X 18570561..18570936 583..958 1835 99.2 Plus
X 23542271 X 18567509..18567636 458..585 640 100 Plus
Blast to na_te.dros performed 2014-11-26 22:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 2731..2802 215..286 125 67.1 Plus
Stalker2 7672 Stalker2 STALKER2 7672bp 3132..3208 200..279 122 65 Plus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2627..2663 246..282 122 81.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2430 184..277 112 59.6 Plus

BS01461.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:00 Download gff for BS01461.complete
Subject Subject Range Query Range Percent Splice Strand
Bx-RC 1..942 17..958 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:53 Download gff for BS01461.complete
Subject Subject Range Query Range Percent Splice Strand
Bx-RC 592..1540 9..962 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:39 Download gff for BS01461.complete
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 320..1261 17..960 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:00 Download gff for BS01461.complete
Subject Subject Range Query Range Percent Splice Strand
Bx-RC 592..1540 9..962 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:25 Download gff for BS01461.complete
Subject Subject Range Query Range Percent Splice Strand
Bx-RB 320..1261 17..960 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:25 Download gff for BS01461.complete
Subject Subject Range Query Range Percent Splice Strand
X 18570564..18570936 586..960 98   Plus
X 18566696..18567138 17..459 100 -> Plus
X 18567511..18567636 460..585 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:39 Download gff for BS01461.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18460729..18461171 17..459 100 -> Plus
arm_X 18461544..18461669 460..585 100 -> Plus
arm_X 18464597..18464969 586..960 98   Plus

BS01461.pep Sequence

Translation from 16 to 957

> BS01461.pep
MMTMDITKTEPGLVGLSSNQQQQQQQQSQQSNAGMNSGGQNNGPNPNGNG
NVVNVVNSGGAGGGNNGNGNVQSIAAAANNNNNNNNNGSQLCAGCGKHIQ
DRYLLRALDMLWHEDCLKCGCCDCRLGEVGSTLYTKGNLMLCKRDYLRLF
GNTGYCAACSKVIPAFEMVMRARTNVYHLECFACQQCNHRFCVGDRFYLC
ENKILCEYDYEERLVFASMANHPMLKRHVSSLGQGSPTGAAGAQNTAGGL
LGGGPGGGNVNGVGMVNGPRTPGDHNNNNNGPQTPTGGGSPFAAAAAAAA
AAAHMKNQLGASS*

BS01461.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
Bx-PC 313 CG44425-PC 1..313 1..313 1709 100 Plus
Bx-PA 313 CG44425-PA 1..313 1..313 1709 100 Plus
Bx-PF 383 CG44425-PF 71..383 1..313 1709 100 Plus
Bx-PB 384 CG44425-PB 72..384 1..313 1709 100 Plus
Bx-PD 424 CG44425-PD 1..313 1..313 1709 100 Plus