Clone BS01463 Report

Search the DGRC for BS01463

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:14
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG4854-RA
Protein status:BS01463.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01463.3prime Sequence

929 bp (799 high quality bases) assembled on 2005-11-29

> BS01463.3prime
ATGGTCTAGAAAGCTTCGTCATTTTACCTCTTTCGTCCTTTTGTGTGACT
TTTCGTGGCTGTTTTTGTGGTGCAGCTGGGAGAAGGACTTCTGGCAGTAC
TGGCAGCTAAATGGTCGTTCACCGGTATGGGTTTTCAGATGAACCCGGAG
GACGTTGGAGTAGCCAAAGGACCTGCTGCAGAACTCGCATTTGTACGGTC
GTTCGTTGGTGTGGATCCTCTGATGCTTAATGCGAGTGGAGGGATCGGCG
AACCTGGAGTCGCAATAGTCACATTTGTAGGGACGATTACCGGTGTGGGT
GTTCATGTGCCTCGCCAACTGCGGAGTCTGGCGAAAACGTTTGTGACAGA
TTTCGCATTCGTGTGGTTTCTTCGCGCTGTGGACTTTCATGTGGTTGGTC
AACTTTACGCGCTCTGAGTAGACATTGTTGCAAATGTTGCAGGTAAAGGA
AGCAGCCTGTCCGGAGTCCTCGTCTTCAAAAGTTACCGGTTTGGGACTAA
GTGAATAGACAGATTCCTCTGGAGCGGAGATGGCAGGCTCTATGCTGACC
AATTCATCGGCACTACAGGCCACATCCTCGCTGCTCTCCAGCGTTACATC
GTATGAGTCTAGGTACTCGTACTCCAACTCGCTGTCGCTACCGGTAGCCT
CATTCTTGGACAGGTCTCTTGATTCAGTTTTCTTCTTCGTCTCCTGCTCA
TCGTGAACAATCTCTATGTTTATCTCCTGCAGCTTCTGCTCCTTCAGATC
CTTCTCCGTCTGCTGGCAAAGGGATCTGAGTTTGAGGGCAGCTCTGAGCA
GCAGGGCGCAGCTGGTGCAGATGCGATTGGGGCAGTCGGGACTCTCACTC
CATTTCACTCCTGTGCAGCGTTTGATTTTATCTGGGAAAATCGGGCTCCG
TGGGCATGAGAGACTCATCTTTAGGCTGC

BS01463.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4854-PA 960 CG4854-RA 94..960 885..19 4210 99.4 Minus
CG4854-PA 960 CG4854-RA 51..95 929..885 200 97.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4854-RA 1220 CG4854-RA 148..1057 929..19 4440 99.2 Minus
CG4936-RA 1824 CG4936-RA 1311..1457 331..185 225 77.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20028341..20028838 850..353 2475 99.8 Minus
3R 32079331 3R 20029198..20029398 219..19 990 99.5 Minus
3R 32079331 3R 20028904..20029039 352..217 680 100 Minus
3R 32079331 3R 20028205..20028276 929..857 300 97.3 Minus
Blast to na_te.dros performed on 2015-02-12 11:32:15 has no hits.

BS01463.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:38 Download gff for BS01463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4854-PA 51..960 19..929 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:47 Download gff for BS01463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4854-PA 51..960 19..929 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:29:01 Download gff for BS01463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4854-RA 150..1065 14..929 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:33 Download gff for BS01463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4854-RA 148..1063 14..929 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:33 Download gff for BS01463.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20029200..20029404 14..217 98   Minus
3R 20028205..20028280 854..929 96 -> Minus
3R 20028339..20028838 353..853 99 -> Minus
3R 20028904..20029038 218..352 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:29:01 Download gff for BS01463.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15853927..15854002 854..929 96 -> Minus
arm_3R 15854061..15854560 353..853 99 -> Minus
arm_3R 15854626..15854760 218..352 100 -> Minus
arm_3R 15854922..15855126 14..217 98   Minus

BS01463.5prime Sequence

839 bp (772 high quality bases) assembled on 2005-11-29

> BS01463.5prime
GAAGTTATCAGTCGACATGCATACCAACGTGGATAGCAGGGACCTTAAGT
GTCGCATCTGCTTGGTGCAGCCTAAGGATGAGTCTCTCATGCCCACGGAG
CCCGATTTTCCAGATAAAATCAAACGCTGCACAGGAGTTGAATTGAGTGA
GAGTCCCGACTGGCCCAATCGCATCTGCACCAGCTGCGCCCTGCTGCTCA
GAGCTGCCCTCAAACTCAGATCCCTTTGCCAGCAGACGGAGAAGGATCTG
AAGGAGCAGAAGCTGCAGGAGATAAACATAGAGATTGTTCACGATGAGCA
GGAGACGAAGAAGAAAACTGAATCAAGAGACCTGTCCAAGAATGAGGCTA
CCGGTAGCGACAGCGAGTTGGAGTACGAGTACCTAGACTCATACGATGTA
ACGCTGGAGAGCAGCGAGGATGTGGCCTGTAGTGCCGATGAATTGGTCAG
CATAGAGCCTGCCATCTCCGCTCCAGAGGAATCTGTCTATTCACTTAGTC
CCAAACCGGTAACTTTTGAAGACGAGGACTCCGGACAGGCTGCTTCCTTT
ACCTGCAACATTTGCAACAATGTCTACTCAGAGCGCGTAAAGTTGACCAA
CCACATGAAAGTCCACAGCGCGAAGAAACCACACGAATGCGAAATCTGTC
ACAAACGTTTTCGCCAGACTCCGCAGTTGGCGAGGCACATGAACACCCAC
ACCGGTAATCGTCCCTACAAATGTGACTATTGCGACTCCAGGTTCGCCGA
TCCCTCCACTCGCATTAAGCATCAGAGGATCCACACCAACGAACGACCGT
ACAAATGCGAGTTCTGCAGCAGGTCCTTTGGCTACTCCC

BS01463.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG4854-PA 960 CG4854-RA 1..822 17..838 4110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4854-RA 1220 CG4854-RA 98..919 17..838 4110 100 Plus
CG4936-RA 1824 CG4936-RA 1311..1457 664..810 225 77.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20028339..20028838 143..642 2500 100 Plus
3R 32079331 3R 20028904..20029039 643..778 680 100 Plus
3R 32079331 3R 20028155..20028280 17..142 630 100 Plus
3R 32079331 3R 20029198..20029260 776..838 315 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:41:33 has no hits.

BS01463.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:39 Download gff for BS01463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4854-PA 1..822 17..839 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:48 Download gff for BS01463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4854-PA 1..822 17..839 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:51:45 Download gff for BS01463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4854-RA 90..921 6..839 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:00:41 Download gff for BS01463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4854-RA 88..919 6..839 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:00:41 Download gff for BS01463.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20029200..20029260 778..839 98   Plus
3R 20028145..20028280 6..142 97 -> Plus
3R 20028339..20028838 143..642 100 -> Plus
3R 20028904..20029038 643..777 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:51:45 Download gff for BS01463.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15854922..15854982 778..839 98   Plus
arm_3R 15853867..15854002 6..142 97 -> Plus
arm_3R 15854061..15854560 143..642 100 -> Plus
arm_3R 15854626..15854760 643..777 100 -> Plus

BS01463.complete Sequence

994 bp (994 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634618

> BS01463.complete
GAAGTTATCAGTCGACATGCATACCAACGTGGATAGCAGGGACCTTAAGT
GTCGCATCTGCTTGGTGCAGCCTAAGGATGAGTCTCTCATGCCCACGGAG
CCCGATTTTCCAGATAAAATCAAACGCTGCACAGGAGTTGAATTGAGTGA
GAGTCCCGACTGGCCCAATCGCATCTGCACCAGCTGCGCCCTGCTGCTCA
GAGCTGCCCTCAAACTCAGATCCCTTTGCCAGCAGACGGAGAAGGATCTG
AAGGAGCAGAAGCTGCAGGAGATAAACATAGAGATTGTTCACGATGAGCA
GGAGACGAAGAAGAAAACTGAATCAAGAGACCTGTCCAAGAATGAGGCTA
CCGGTAGCGACAGCGAGTTGGAGTACGAGTACCTAGACTCATACGATGTA
ACGCTGGAGAGCAGCGAGGATGTGGCCTGTAGTGCCGATGAATTGGTCAG
CATAGAGCCTGCCATCTCCGCTCCAGAGGAATCTGTCTATTCACTTAGTC
CCAAACCGGTAACTTTTGAAGACGAGGACTCCGGACAGGCTGCTTCCTTT
ACCTGCAACATTTGCAACAATGTCTACTCAGAGCGCGTAAAGTTGACCAA
CCACATGAAAGTCCACAGCGCGAAGAAACCACACGAATGCGAAATCTGTC
ACAAACGTTTTCGCCAGACTCCGCAGTTGGCGAGGCACATGAACACCCAC
ACCGGTAATCGTCCCTACAAATGTGACTATTGCGACTCCAGGTTCGCCGA
TCCCTCCACTCGCATTAAGCATCAGAGGATCCACACCAACGAACGACCGT
ACAAATGCGAGTTCTGCAGCAGGTCCTTTGGCTACTCCAACGTCCTCCGG
GTTCATCTGAAAACCCATACCGGTGAACGACCATTTAGCTGCCAGTACTG
CCAGAAGTCCTTCTCCCAGCTGCACCACAAAAACAGCCACGAAAAGTCAC
ACAAAAGGACGAAAGAGGTAAAATGACGAAGCTTTCTAGACCAT

BS01463.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:46:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4854-RA 960 CG4854-PA 1..960 17..976 4785 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4854-RA 1220 CG4854-RA 98..1057 17..976 4785 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20028339..20028838 143..642 2500 100 Plus
3R 32079331 3R 20029198..20029398 776..976 990 99.5 Plus
3R 32079331 3R 20028904..20029039 643..778 680 100 Plus
3R 32079331 3R 20028155..20028280 17..142 630 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:46:03 has no hits.

BS01463.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:02 Download gff for BS01463.complete
Subject Subject Range Query Range Percent Splice Strand
CG4854-RA 1..960 17..976 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:55 Download gff for BS01463.complete
Subject Subject Range Query Range Percent Splice Strand
CG4854-RA 90..1065 6..981 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:33:23 Download gff for BS01463.complete
Subject Subject Range Query Range Percent Splice Strand
CG4854-RA 100..1059 17..978 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:02 Download gff for BS01463.complete
Subject Subject Range Query Range Percent Splice Strand
CG4854-RA 90..1065 6..981 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:03 Download gff for BS01463.complete
Subject Subject Range Query Range Percent Splice Strand
CG4854-RA 98..1057 17..978 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:03 Download gff for BS01463.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20028904..20029038 643..777 100 -> Plus
3R 20029200..20029398 778..978 98   Plus
3R 20028155..20028280 17..142 100 -> Plus
3R 20028339..20028838 143..642 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:33:23 Download gff for BS01463.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15854626..15854760 643..777 100 -> Plus
arm_3R 15854922..15855120 778..978 98   Plus
arm_3R 15853877..15854002 17..142 100 -> Plus
arm_3R 15854061..15854560 143..642 100 -> Plus

BS01463.pep Sequence

Translation from 16 to 975

> BS01463.pep
MHTNVDSRDLKCRICLVQPKDESLMPTEPDFPDKIKRCTGVELSESPDWP
NRICTSCALLLRAALKLRSLCQQTEKDLKEQKLQEINIEIVHDEQETKKK
TESRDLSKNEATGSDSELEYEYLDSYDVTLESSEDVACSADELVSIEPAI
SAPEESVYSLSPKPVTFEDEDSGQAASFTCNICNNVYSERVKLTNHMKVH
SAKKPHECEICHKRFRQTPQLARHMNTHTGNRPYKCDYCDSRFADPSTRI
KHQRIHTNERPYKCEFCSRSFGYSNVLRVHLKTHTGERPFSCQYCQKSFS
QLHHKNSHEKSHKRTKEVK*

BS01463.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4854-PA 319 CG4854-PA 1..319 1..319 1720 100 Plus
trem-PA 439 CG4413-PA 173..408 93..314 471 41.2 Plus
CG4424-PA 345 CG4424-PA 11..326 12..317 460 32.7 Plus
CG4936-PA 521 CG4936-PA 360..496 178..314 460 56.2 Plus
CG14711-PA 377 CG14711-PA 7..365 12..315 455 30.9 Plus
trem-PA 439 CG4413-PA 1..354 1..316 218 21.1 Plus