Clone Sequence Records
BS01463.3prime Sequence
929 bp (799 high quality bases) assembled on 2005-11-29
> BS01463.3prime
ATGGTCTAGAAAGCTTCGTCATTTTACCTCTTTCGTCCTTTTGTGTGACT
TTTCGTGGCTGTTTTTGTGGTGCAGCTGGGAGAAGGACTTCTGGCAGTAC
TGGCAGCTAAATGGTCGTTCACCGGTATGGGTTTTCAGATGAACCCGGAG
GACGTTGGAGTAGCCAAAGGACCTGCTGCAGAACTCGCATTTGTACGGTC
GTTCGTTGGTGTGGATCCTCTGATGCTTAATGCGAGTGGAGGGATCGGCG
AACCTGGAGTCGCAATAGTCACATTTGTAGGGACGATTACCGGTGTGGGT
GTTCATGTGCCTCGCCAACTGCGGAGTCTGGCGAAAACGTTTGTGACAGA
TTTCGCATTCGTGTGGTTTCTTCGCGCTGTGGACTTTCATGTGGTTGGTC
AACTTTACGCGCTCTGAGTAGACATTGTTGCAAATGTTGCAGGTAAAGGA
AGCAGCCTGTCCGGAGTCCTCGTCTTCAAAAGTTACCGGTTTGGGACTAA
GTGAATAGACAGATTCCTCTGGAGCGGAGATGGCAGGCTCTATGCTGACC
AATTCATCGGCACTACAGGCCACATCCTCGCTGCTCTCCAGCGTTACATC
GTATGAGTCTAGGTACTCGTACTCCAACTCGCTGTCGCTACCGGTAGCCT
CATTCTTGGACAGGTCTCTTGATTCAGTTTTCTTCTTCGTCTCCTGCTCA
TCGTGAACAATCTCTATGTTTATCTCCTGCAGCTTCTGCTCCTTCAGATC
CTTCTCCGTCTGCTGGCAAAGGGATCTGAGTTTGAGGGCAGCTCTGAGCA
GCAGGGCGCAGCTGGTGCAGATGCGATTGGGGCAGTCGGGACTCTCACTC
CATTTCACTCCTGTGCAGCGTTTGATTTTATCTGGGAAAATCGGGCTCCG
TGGGCATGAGAGACTCATCTTTAGGCTGC
BS01463.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4854-PA | 960 | CG4854-RA | 94..960 | 885..19 | 4210 | 99.4 | Minus |
CG4854-PA | 960 | CG4854-RA | 51..95 | 929..885 | 200 | 97.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4854-RA | 1220 | CG4854-RA | 148..1057 | 929..19 | 4440 | 99.2 | Minus |
CG4936-RA | 1824 | CG4936-RA | 1311..1457 | 331..185 | 225 | 77.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20028341..20028838 | 850..353 | 2475 | 99.8 | Minus |
3R | 32079331 | 3R | 20029198..20029398 | 219..19 | 990 | 99.5 | Minus |
3R | 32079331 | 3R | 20028904..20029039 | 352..217 | 680 | 100 | Minus |
3R | 32079331 | 3R | 20028205..20028276 | 929..857 | 300 | 97.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:32:15 has no hits.
BS01463.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:38 Download gff for
BS01463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-PA | 51..960 | 19..929 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:47 Download gff for
BS01463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-PA | 51..960 | 19..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:29:01 Download gff for
BS01463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-RA | 150..1065 | 14..929 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:33 Download gff for
BS01463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-RA | 148..1063 | 14..929 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:33 Download gff for
BS01463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20029200..20029404 | 14..217 | 98 | | Minus |
3R | 20028205..20028280 | 854..929 | 96 | -> | Minus |
3R | 20028339..20028838 | 353..853 | 99 | -> | Minus |
3R | 20028904..20029038 | 218..352 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:29:01 Download gff for
BS01463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15853927..15854002 | 854..929 | 96 | -> | Minus |
arm_3R | 15854061..15854560 | 353..853 | 99 | -> | Minus |
arm_3R | 15854626..15854760 | 218..352 | 100 | -> | Minus |
arm_3R | 15854922..15855126 | 14..217 | 98 | | Minus |
BS01463.5prime Sequence
839 bp (772 high quality bases) assembled on 2005-11-29
> BS01463.5prime
GAAGTTATCAGTCGACATGCATACCAACGTGGATAGCAGGGACCTTAAGT
GTCGCATCTGCTTGGTGCAGCCTAAGGATGAGTCTCTCATGCCCACGGAG
CCCGATTTTCCAGATAAAATCAAACGCTGCACAGGAGTTGAATTGAGTGA
GAGTCCCGACTGGCCCAATCGCATCTGCACCAGCTGCGCCCTGCTGCTCA
GAGCTGCCCTCAAACTCAGATCCCTTTGCCAGCAGACGGAGAAGGATCTG
AAGGAGCAGAAGCTGCAGGAGATAAACATAGAGATTGTTCACGATGAGCA
GGAGACGAAGAAGAAAACTGAATCAAGAGACCTGTCCAAGAATGAGGCTA
CCGGTAGCGACAGCGAGTTGGAGTACGAGTACCTAGACTCATACGATGTA
ACGCTGGAGAGCAGCGAGGATGTGGCCTGTAGTGCCGATGAATTGGTCAG
CATAGAGCCTGCCATCTCCGCTCCAGAGGAATCTGTCTATTCACTTAGTC
CCAAACCGGTAACTTTTGAAGACGAGGACTCCGGACAGGCTGCTTCCTTT
ACCTGCAACATTTGCAACAATGTCTACTCAGAGCGCGTAAAGTTGACCAA
CCACATGAAAGTCCACAGCGCGAAGAAACCACACGAATGCGAAATCTGTC
ACAAACGTTTTCGCCAGACTCCGCAGTTGGCGAGGCACATGAACACCCAC
ACCGGTAATCGTCCCTACAAATGTGACTATTGCGACTCCAGGTTCGCCGA
TCCCTCCACTCGCATTAAGCATCAGAGGATCCACACCAACGAACGACCGT
ACAAATGCGAGTTCTGCAGCAGGTCCTTTGGCTACTCCC
BS01463.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4854-PA | 960 | CG4854-RA | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4854-RA | 1220 | CG4854-RA | 98..919 | 17..838 | 4110 | 100 | Plus |
CG4936-RA | 1824 | CG4936-RA | 1311..1457 | 664..810 | 225 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20028339..20028838 | 143..642 | 2500 | 100 | Plus |
3R | 32079331 | 3R | 20028904..20029039 | 643..778 | 680 | 100 | Plus |
3R | 32079331 | 3R | 20028155..20028280 | 17..142 | 630 | 100 | Plus |
3R | 32079331 | 3R | 20029198..20029260 | 776..838 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:41:33 has no hits.
BS01463.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:39 Download gff for
BS01463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-PA | 1..822 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:17:48 Download gff for
BS01463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-PA | 1..822 | 17..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:51:45 Download gff for
BS01463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-RA | 90..921 | 6..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:00:41 Download gff for
BS01463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-RA | 88..919 | 6..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:00:41 Download gff for
BS01463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20029200..20029260 | 778..839 | 98 | | Plus |
3R | 20028145..20028280 | 6..142 | 97 | -> | Plus |
3R | 20028339..20028838 | 143..642 | 100 | -> | Plus |
3R | 20028904..20029038 | 643..777 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:51:45 Download gff for
BS01463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15854922..15854982 | 778..839 | 98 | | Plus |
arm_3R | 15853867..15854002 | 6..142 | 97 | -> | Plus |
arm_3R | 15854061..15854560 | 143..642 | 100 | -> | Plus |
arm_3R | 15854626..15854760 | 643..777 | 100 | -> | Plus |
BS01463.complete Sequence
994 bp (994 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634618
> BS01463.complete
GAAGTTATCAGTCGACATGCATACCAACGTGGATAGCAGGGACCTTAAGT
GTCGCATCTGCTTGGTGCAGCCTAAGGATGAGTCTCTCATGCCCACGGAG
CCCGATTTTCCAGATAAAATCAAACGCTGCACAGGAGTTGAATTGAGTGA
GAGTCCCGACTGGCCCAATCGCATCTGCACCAGCTGCGCCCTGCTGCTCA
GAGCTGCCCTCAAACTCAGATCCCTTTGCCAGCAGACGGAGAAGGATCTG
AAGGAGCAGAAGCTGCAGGAGATAAACATAGAGATTGTTCACGATGAGCA
GGAGACGAAGAAGAAAACTGAATCAAGAGACCTGTCCAAGAATGAGGCTA
CCGGTAGCGACAGCGAGTTGGAGTACGAGTACCTAGACTCATACGATGTA
ACGCTGGAGAGCAGCGAGGATGTGGCCTGTAGTGCCGATGAATTGGTCAG
CATAGAGCCTGCCATCTCCGCTCCAGAGGAATCTGTCTATTCACTTAGTC
CCAAACCGGTAACTTTTGAAGACGAGGACTCCGGACAGGCTGCTTCCTTT
ACCTGCAACATTTGCAACAATGTCTACTCAGAGCGCGTAAAGTTGACCAA
CCACATGAAAGTCCACAGCGCGAAGAAACCACACGAATGCGAAATCTGTC
ACAAACGTTTTCGCCAGACTCCGCAGTTGGCGAGGCACATGAACACCCAC
ACCGGTAATCGTCCCTACAAATGTGACTATTGCGACTCCAGGTTCGCCGA
TCCCTCCACTCGCATTAAGCATCAGAGGATCCACACCAACGAACGACCGT
ACAAATGCGAGTTCTGCAGCAGGTCCTTTGGCTACTCCAACGTCCTCCGG
GTTCATCTGAAAACCCATACCGGTGAACGACCATTTAGCTGCCAGTACTG
CCAGAAGTCCTTCTCCCAGCTGCACCACAAAAACAGCCACGAAAAGTCAC
ACAAAAGGACGAAAGAGGTAAAATGACGAAGCTTTCTAGACCAT
BS01463.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:46:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4854-RA | 960 | CG4854-PA | 1..960 | 17..976 | 4785 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:46:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4854-RA | 1220 | CG4854-RA | 98..1057 | 17..976 | 4785 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20028339..20028838 | 143..642 | 2500 | 100 | Plus |
3R | 32079331 | 3R | 20029198..20029398 | 776..976 | 990 | 99.5 | Plus |
3R | 32079331 | 3R | 20028904..20029039 | 643..778 | 680 | 100 | Plus |
3R | 32079331 | 3R | 20028155..20028280 | 17..142 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:46:03 has no hits.
BS01463.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:02 Download gff for
BS01463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-RA | 1..960 | 17..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:55 Download gff for
BS01463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-RA | 90..1065 | 6..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:33:23 Download gff for
BS01463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-RA | 100..1059 | 17..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:02 Download gff for
BS01463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-RA | 90..1065 | 6..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:03 Download gff for
BS01463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4854-RA | 98..1057 | 17..978 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:03 Download gff for
BS01463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20028904..20029038 | 643..777 | 100 | -> | Plus |
3R | 20029200..20029398 | 778..978 | 98 | | Plus |
3R | 20028155..20028280 | 17..142 | 100 | -> | Plus |
3R | 20028339..20028838 | 143..642 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:33:23 Download gff for
BS01463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15854626..15854760 | 643..777 | 100 | -> | Plus |
arm_3R | 15854922..15855120 | 778..978 | 98 | | Plus |
arm_3R | 15853877..15854002 | 17..142 | 100 | -> | Plus |
arm_3R | 15854061..15854560 | 143..642 | 100 | -> | Plus |
BS01463.pep Sequence
Translation from 16 to 975
> BS01463.pep
MHTNVDSRDLKCRICLVQPKDESLMPTEPDFPDKIKRCTGVELSESPDWP
NRICTSCALLLRAALKLRSLCQQTEKDLKEQKLQEINIEIVHDEQETKKK
TESRDLSKNEATGSDSELEYEYLDSYDVTLESSEDVACSADELVSIEPAI
SAPEESVYSLSPKPVTFEDEDSGQAASFTCNICNNVYSERVKLTNHMKVH
SAKKPHECEICHKRFRQTPQLARHMNTHTGNRPYKCDYCDSRFADPSTRI
KHQRIHTNERPYKCEFCSRSFGYSNVLRVHLKTHTGERPFSCQYCQKSFS
QLHHKNSHEKSHKRTKEVK*
BS01463.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:50:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4854-PA | 319 | CG4854-PA | 1..319 | 1..319 | 1720 | 100 | Plus |
trem-PA | 439 | CG4413-PA | 173..408 | 93..314 | 471 | 41.2 | Plus |
CG4424-PA | 345 | CG4424-PA | 11..326 | 12..317 | 460 | 32.7 | Plus |
CG4936-PA | 521 | CG4936-PA | 360..496 | 178..314 | 460 | 56.2 | Plus |
CG14711-PA | 377 | CG14711-PA | 7..365 | 12..315 | 455 | 30.9 | Plus |
trem-PA | 439 | CG4413-PA | 1..354 | 1..316 | 218 | 21.1 | Plus |