Clone BS01468 Report

Search the DGRC for BS01468

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:14
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG13123-RA
Protein status:BS01468.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01468.3prime Sequence

801 bp (517 high quality bases) assembled on 2005-11-29

> BS01468.3prime
ATGGTCTAGAAAGCTTCGTTATGAGCGCGGATTATCCCGATCCTGACTGG
CTGGCCTGTAATCCAGCAGTGCCACCTGTGCGGGCAGCTGAACTCCATGA
ATTTTCTTTAAGTGAGCCCTCAGATTGCTACTGGTACTAAAGTTGTTGGA
GCAGACAACGCACTGGTGATGCGGATGCTTCTGCCGAATATGCTCATTGA
GATCGCGAACCTTGGCGAAGGCGGTGGTGCAGTACTTGCAGACGTGCGAA
TTGCGCACGTGGGTTTTCAGATATTGAGGCGAGGCATAAGCCAGTGGGCA
GTACTGGCACTTGTAGATGGCCTGGCTGCCACTGGGCTCCACGTCCAGCA
GGCGATTGGCCTCGTTGTACTCGTCCAGGTTGTAGTGTTTCAGTTCGACG
GCAGCATAGTCCACGGTGCGCATCTCGTATGCTGGGGATTCCAGTTGCTC
CAGCTGAGAGTCGGATAGATCCAGTCGTGGTTGGGCTGTGGTGGCAGGTA
AAAACTCGGAGACAATCAGCCAATCTTGGTTGGCCAGCCTTTGAGAGGGT
TTCGTACAGCTATCCGTCCTTCTCCTCGTTTGTCTTGTTTCTGTAGGACG
ATCGGGGTCTAAAACCACATAATCCAGTGGTATCCTCCTGAATTCCCCTC
CGTATCTCGAATTCATCACTAGCCTGGTTTTCGGGCTCTTCCTCCGTTGC
GTCCATCTTAACTTGGCACATTTCTACCTCCGCCTCGTTGTAGAGCTGCA
GTAGCTGCTGATTGGCGAACGTTAGCTTCCTGAAAAAAGCGTACTGCTGC
A

BS01468.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13123-PA 972 CG13123-RA 345..972 646..19 3115 99.8 Minus
CG13123-PA 972 CG13123-RA 191..340 801..652 700 98.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13123-RC 1087 CG13123-RC 285..1066 801..19 3815 99.2 Minus
CG13123-RB 996 CG13123-RB 194..975 801..19 3815 99.2 Minus
CG13123-RA 1094 CG13123-RA 292..1073 801..19 3815 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 14:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9791982..9792763 19..801 3790 99.2 Plus
Blast to na_te.dros performed on 2015-02-03 14:28:52 has no hits.

BS01468.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:49 Download gff for BS01468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13123-PA 192..972 19..800 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:00 Download gff for BS01468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13123-PA 192..972 19..800 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:10:39 Download gff for BS01468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13123-RA 293..1084 7..800 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:57:13 Download gff for BS01468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13123-RA 293..1084 7..800 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:57:13 Download gff for BS01468.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9791971..9792762 7..800 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:10:39 Download gff for BS01468.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9791971..9792762 7..800 98   Plus

BS01468.5prime Sequence

910 bp (737 high quality bases) assembled on 2005-11-29

> BS01468.5prime
GAAGTTATCAGTCGACATGGACCTGCGTAAACTGTGCCGCATTTGCTTCG
TGGACAGCGCTTCGGTGGATATACGGGAGCACAGGAGCGGTGGCAGTTCG
GATCAGACAGTCCTCCAGCTGATAGAAGCCATGTTCGGCTGGAACATAGC
ACTTAATCTTACTGAGGAGCTGCCCATGATCTGTAATGATTGCTTGGAAG
ATTGCCTGCAGCAGTACGCCTTCTTCAGGAAGCTAACGTTCGCCAATCAG
CAGCTACTGCAGCTCTACAACGAGGCGGAGGTAGAAATGTGCCAAGTTAA
GATGGACGCAACGGAGGAAGAGCCCGAAAACCAGGCTAGTGATGAATTCG
AGATACTGGAGGAATTCAGGAGGATACCACTGGATTATGTGGTTTTAGAC
CCCGATCGTCCTACAGAAACAAGACAAACGAGGAGAAGGACGGATAGCTG
TACGAAACCCTCTCAAAGGCTGGCCAACCAAGATTCGCTGATTGTCTCCG
AGTTTTTACCTGCCACCACAGCCCAACCACGACTGGATCTATCCGACTCT
CAGCTGGAGCAACTGGAATCCCCAGCATACGAGATGCGCACCGTGGACTA
TGCTGCCGTCGAACTGAAACACTACAACCTGGACGAGTACAACGAGGCCA
ATCGCCTGCTGGACGTGGAGCCCAGTGGCAGCCAGGCCATCTACAAGTGC
CAGTACTGCCCACTGGCTTATGCCTCGCCTCAATATCTGAAAACCCACGT
GCGCAATTCGCACGTCTGNCAGTACTGCACCACCGCCTTTCGCCAGGTTC
GCGATCTCAATGAGCATATTCGGCAGAAGCATCCGCATCACCAGTGCGTT
GTCTGCTCCCAACACTTTAGTACCAGTAGCAATCTGAGGGCTCACTTAAA
GAAAATCATG

BS01468.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG13123-PA 972 CG13123-RA 1..773 17..789 3821 99.7 Plus
CG13123-PA 972 CG13123-RA 779..843 795..859 325 100 Plus
CG13123-PA 972 CG13123-RA 848..890 864..906 215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13123-RA 1094 CG13123-RA 101..991 16..906 4339 99.3 Plus
CG13123-RC 1087 CG13123-RC 101..984 16..906 4224 98.5 Plus
CG13123-RB 996 CG13123-RB 45..893 58..906 4129 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9792064..9792828 906..142 3694 98.8 Minus
2L 23513712 2L 9792881..9793007 142..16 635 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:35:00 has no hits.

BS01468.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:50 Download gff for BS01468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13123-PA 1..895 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:01 Download gff for BS01468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13123-PA 1..895 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:08:53 Download gff for BS01468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13123-RA 101..996 16..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:05 Download gff for BS01468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13123-RA 101..996 16..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:05 Download gff for BS01468.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9792059..9792827 143..910 99 <- Minus
2L 9792881..9793007 16..142 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:08:53 Download gff for BS01468.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9792059..9792827 143..910 99 <- Minus
arm_2L 9792881..9793007 16..142 100   Minus

BS01468.complete Sequence

1006 bp (1006 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634619

> BS01468.complete
GAAGTTATCAGTCGACATGGACCTGCGTAAACTGTGCCGCATTTGCTTCG
TGGACAGCGCTTCGGTGGATATACGGGAGCACAGGAGCGGTGGCAGTTCG
GATCAGACAGTCCTCCAGCTGATAGAAGCCATGTTCGGCTGGAACATAGC
ACTTAATCTTACTGAGGAGCTGCCCATGATCTGTAATGATTGCTTGGAAG
ATTGCCTGCAGCAGTACGCCTTCTTCAGGAAGCTAACGTTCGCCAATCAG
CAGCTACTGCAGCTCTACAACGAGGCGGAGGTAGAAATGTGCCAAGTTAA
GATGGACGCAACGGAGGAAGAGCCCGAAAACCAGGCTAGTGATGAATTCG
AGATACTGGAGGAATTCAGGAGGATACCACTGGATTATGTGGTTTTAGAC
CCCGATCGTCCTACAGAAACAAGACAAACGAGGAGAAGGACGGATAGCTG
TACGAAACCCTCTCAAAGGCTGGCCAACCAAGATTCGCTGATTGTCTCCG
AGTTTTTACCTGCCACCACAGCCCAACCACGACTGGATCTATCCGACTCT
CAGCTGGAGCAACTGGAATCCCCAGCATACGAGATGCGCACCGTGGACTA
TGCTGCCGTCGAACTGAAACACTACAACCTGGACGAGTACAACGAGGCCA
ATCGCCTGCTGGACGTGGAGCCCAGTGGCAGCCAGGCCATCTACAAGTGC
CAGTACTGCCCACTGGCTTATGCCTCGCCTCAATATCTGAAAACCCACGT
GCGCAATTCGCACGTCTGCAAGTACTGCACCACCGCCTTCGCCAAGGTTC
GCGATCTCAATGAGCATATTCGGCAGAAGCATCCGCATCACCAGTGCGTT
GTCTGCTCCAACAACTTTAGTACCAGTAGCAATCTGAGGGCTCACTTAAA
GAAAATTCATGGAGTTCAGCTGCCCGCACAGGTGGCACTGCTGGATTACA
GGCCAGCCAGTCAGGATCGGGATAATCCGCGCTCATAACGAAGCTTTCTA
GACCAT

BS01468.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13123-RA 972 CG13123-PA 1..972 17..988 4860 100 Plus
CG13123-RC 813 CG13123-PC 1..813 176..988 4065 100 Plus
CG13123-RB 813 CG13123-PB 1..813 176..988 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13123-RA 1094 CG13123-RA 101..1073 16..988 4865 100 Plus
CG13123-RC 1087 CG13123-RC 101..1066 16..988 4725 99.3 Plus
CG13123-RB 996 CG13123-RB 45..975 58..988 4655 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9791982..9792828 988..142 4235 100 Minus
2L 23513712 2L 9792881..9793007 142..16 635 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:55:49 has no hits.

BS01468.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:04 Download gff for BS01468.complete
Subject Subject Range Query Range Percent Splice Strand
CG13123-RA 1..972 17..988 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:58 Download gff for BS01468.complete
Subject Subject Range Query Range Percent Splice Strand
CG13123-RA 91..1074 16..1000 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:51 Download gff for BS01468.complete
Subject Subject Range Query Range Percent Splice Strand
CG13123-RA 102..1073 17..990 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:05 Download gff for BS01468.complete
Subject Subject Range Query Range Percent Splice Strand
CG13123-RA 91..1074 16..1000 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:17 Download gff for BS01468.complete
Subject Subject Range Query Range Percent Splice Strand
CG13123-RA 102..1073 17..990 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:17 Download gff for BS01468.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9791980..9792827 143..990 99 <- Minus
2L 9792881..9793006 17..142 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:51 Download gff for BS01468.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9791980..9792827 143..990 99 <- Minus
arm_2L 9792881..9793006 17..142 100   Minus

BS01468.pep Sequence

Translation from 16 to 987

> BS01468.pep
MDLRKLCRICFVDSASVDIREHRSGGSSDQTVLQLIEAMFGWNIALNLTE
ELPMICNDCLEDCLQQYAFFRKLTFANQQLLQLYNEAEVEMCQVKMDATE
EEPENQASDEFEILEEFRRIPLDYVVLDPDRPTETRQTRRRTDSCTKPSQ
RLANQDSLIVSEFLPATTAQPRLDLSDSQLEQLESPAYEMRTVDYAAVEL
KHYNLDEYNEANRLLDVEPSGSQAIYKCQYCPLAYASPQYLKTHVRNSHV
CKYCTTAFAKVRDLNEHIRQKHPHHQCVVCSNNFSTSSNLRAHLKKIHGV
QLPAQVALLDYRPASQDRDNPRS*

BS01468.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13123-PA 323 CG13123-PA 1..323 1..323 1703 100 Plus
CG13123-PC 270 CG13123-PC 1..270 54..323 1430 100 Plus
CG13123-PB 270 CG13123-PB 1..270 54..323 1430 100 Plus