Clone Sequence Records
BS01468.3prime Sequence
801 bp (517 high quality bases) assembled on 2005-11-29
> BS01468.3prime
ATGGTCTAGAAAGCTTCGTTATGAGCGCGGATTATCCCGATCCTGACTGG
CTGGCCTGTAATCCAGCAGTGCCACCTGTGCGGGCAGCTGAACTCCATGA
ATTTTCTTTAAGTGAGCCCTCAGATTGCTACTGGTACTAAAGTTGTTGGA
GCAGACAACGCACTGGTGATGCGGATGCTTCTGCCGAATATGCTCATTGA
GATCGCGAACCTTGGCGAAGGCGGTGGTGCAGTACTTGCAGACGTGCGAA
TTGCGCACGTGGGTTTTCAGATATTGAGGCGAGGCATAAGCCAGTGGGCA
GTACTGGCACTTGTAGATGGCCTGGCTGCCACTGGGCTCCACGTCCAGCA
GGCGATTGGCCTCGTTGTACTCGTCCAGGTTGTAGTGTTTCAGTTCGACG
GCAGCATAGTCCACGGTGCGCATCTCGTATGCTGGGGATTCCAGTTGCTC
CAGCTGAGAGTCGGATAGATCCAGTCGTGGTTGGGCTGTGGTGGCAGGTA
AAAACTCGGAGACAATCAGCCAATCTTGGTTGGCCAGCCTTTGAGAGGGT
TTCGTACAGCTATCCGTCCTTCTCCTCGTTTGTCTTGTTTCTGTAGGACG
ATCGGGGTCTAAAACCACATAATCCAGTGGTATCCTCCTGAATTCCCCTC
CGTATCTCGAATTCATCACTAGCCTGGTTTTCGGGCTCTTCCTCCGTTGC
GTCCATCTTAACTTGGCACATTTCTACCTCCGCCTCGTTGTAGAGCTGCA
GTAGCTGCTGATTGGCGAACGTTAGCTTCCTGAAAAAAGCGTACTGCTGC
A
BS01468.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13123-PA | 972 | CG13123-RA | 345..972 | 646..19 | 3115 | 99.8 | Minus |
CG13123-PA | 972 | CG13123-RA | 191..340 | 801..652 | 700 | 98.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:28:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13123-RC | 1087 | CG13123-RC | 285..1066 | 801..19 | 3815 | 99.2 | Minus |
CG13123-RB | 996 | CG13123-RB | 194..975 | 801..19 | 3815 | 99.2 | Minus |
CG13123-RA | 1094 | CG13123-RA | 292..1073 | 801..19 | 3815 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 14:28:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9791982..9792763 | 19..801 | 3790 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-03 14:28:52 has no hits.
BS01468.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:49 Download gff for
BS01468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-PA | 192..972 | 19..800 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:00 Download gff for
BS01468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-PA | 192..972 | 19..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:10:39 Download gff for
BS01468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-RA | 293..1084 | 7..800 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:57:13 Download gff for
BS01468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-RA | 293..1084 | 7..800 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:57:13 Download gff for
BS01468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9791971..9792762 | 7..800 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:10:39 Download gff for
BS01468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9791971..9792762 | 7..800 | 98 | | Plus |
BS01468.5prime Sequence
910 bp (737 high quality bases) assembled on 2005-11-29
> BS01468.5prime
GAAGTTATCAGTCGACATGGACCTGCGTAAACTGTGCCGCATTTGCTTCG
TGGACAGCGCTTCGGTGGATATACGGGAGCACAGGAGCGGTGGCAGTTCG
GATCAGACAGTCCTCCAGCTGATAGAAGCCATGTTCGGCTGGAACATAGC
ACTTAATCTTACTGAGGAGCTGCCCATGATCTGTAATGATTGCTTGGAAG
ATTGCCTGCAGCAGTACGCCTTCTTCAGGAAGCTAACGTTCGCCAATCAG
CAGCTACTGCAGCTCTACAACGAGGCGGAGGTAGAAATGTGCCAAGTTAA
GATGGACGCAACGGAGGAAGAGCCCGAAAACCAGGCTAGTGATGAATTCG
AGATACTGGAGGAATTCAGGAGGATACCACTGGATTATGTGGTTTTAGAC
CCCGATCGTCCTACAGAAACAAGACAAACGAGGAGAAGGACGGATAGCTG
TACGAAACCCTCTCAAAGGCTGGCCAACCAAGATTCGCTGATTGTCTCCG
AGTTTTTACCTGCCACCACAGCCCAACCACGACTGGATCTATCCGACTCT
CAGCTGGAGCAACTGGAATCCCCAGCATACGAGATGCGCACCGTGGACTA
TGCTGCCGTCGAACTGAAACACTACAACCTGGACGAGTACAACGAGGCCA
ATCGCCTGCTGGACGTGGAGCCCAGTGGCAGCCAGGCCATCTACAAGTGC
CAGTACTGCCCACTGGCTTATGCCTCGCCTCAATATCTGAAAACCCACGT
GCGCAATTCGCACGTCTGNCAGTACTGCACCACCGCCTTTCGCCAGGTTC
GCGATCTCAATGAGCATATTCGGCAGAAGCATCCGCATCACCAGTGCGTT
GTCTGCTCCCAACACTTTAGTACCAGTAGCAATCTGAGGGCTCACTTAAA
GAAAATCATG
BS01468.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13123-PA | 972 | CG13123-RA | 1..773 | 17..789 | 3821 | 99.7 | Plus |
CG13123-PA | 972 | CG13123-RA | 779..843 | 795..859 | 325 | 100 | Plus |
CG13123-PA | 972 | CG13123-RA | 848..890 | 864..906 | 215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:35:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13123-RA | 1094 | CG13123-RA | 101..991 | 16..906 | 4339 | 99.3 | Plus |
CG13123-RC | 1087 | CG13123-RC | 101..984 | 16..906 | 4224 | 98.5 | Plus |
CG13123-RB | 996 | CG13123-RB | 45..893 | 58..906 | 4129 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9792064..9792828 | 906..142 | 3694 | 98.8 | Minus |
2L | 23513712 | 2L | 9792881..9793007 | 142..16 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:35:00 has no hits.
BS01468.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:50 Download gff for
BS01468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-PA | 1..895 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:01 Download gff for
BS01468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-PA | 1..895 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:08:53 Download gff for
BS01468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-RA | 101..996 | 16..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:05 Download gff for
BS01468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-RA | 101..996 | 16..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:05 Download gff for
BS01468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9792059..9792827 | 143..910 | 99 | <- | Minus |
2L | 9792881..9793007 | 16..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:08:53 Download gff for
BS01468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9792059..9792827 | 143..910 | 99 | <- | Minus |
arm_2L | 9792881..9793007 | 16..142 | 100 | | Minus |
BS01468.complete Sequence
1006 bp (1006 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634619
> BS01468.complete
GAAGTTATCAGTCGACATGGACCTGCGTAAACTGTGCCGCATTTGCTTCG
TGGACAGCGCTTCGGTGGATATACGGGAGCACAGGAGCGGTGGCAGTTCG
GATCAGACAGTCCTCCAGCTGATAGAAGCCATGTTCGGCTGGAACATAGC
ACTTAATCTTACTGAGGAGCTGCCCATGATCTGTAATGATTGCTTGGAAG
ATTGCCTGCAGCAGTACGCCTTCTTCAGGAAGCTAACGTTCGCCAATCAG
CAGCTACTGCAGCTCTACAACGAGGCGGAGGTAGAAATGTGCCAAGTTAA
GATGGACGCAACGGAGGAAGAGCCCGAAAACCAGGCTAGTGATGAATTCG
AGATACTGGAGGAATTCAGGAGGATACCACTGGATTATGTGGTTTTAGAC
CCCGATCGTCCTACAGAAACAAGACAAACGAGGAGAAGGACGGATAGCTG
TACGAAACCCTCTCAAAGGCTGGCCAACCAAGATTCGCTGATTGTCTCCG
AGTTTTTACCTGCCACCACAGCCCAACCACGACTGGATCTATCCGACTCT
CAGCTGGAGCAACTGGAATCCCCAGCATACGAGATGCGCACCGTGGACTA
TGCTGCCGTCGAACTGAAACACTACAACCTGGACGAGTACAACGAGGCCA
ATCGCCTGCTGGACGTGGAGCCCAGTGGCAGCCAGGCCATCTACAAGTGC
CAGTACTGCCCACTGGCTTATGCCTCGCCTCAATATCTGAAAACCCACGT
GCGCAATTCGCACGTCTGCAAGTACTGCACCACCGCCTTCGCCAAGGTTC
GCGATCTCAATGAGCATATTCGGCAGAAGCATCCGCATCACCAGTGCGTT
GTCTGCTCCAACAACTTTAGTACCAGTAGCAATCTGAGGGCTCACTTAAA
GAAAATTCATGGAGTTCAGCTGCCCGCACAGGTGGCACTGCTGGATTACA
GGCCAGCCAGTCAGGATCGGGATAATCCGCGCTCATAACGAAGCTTTCTA
GACCAT
BS01468.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13123-RA | 972 | CG13123-PA | 1..972 | 17..988 | 4860 | 100 | Plus |
CG13123-RC | 813 | CG13123-PC | 1..813 | 176..988 | 4065 | 100 | Plus |
CG13123-RB | 813 | CG13123-PB | 1..813 | 176..988 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13123-RA | 1094 | CG13123-RA | 101..1073 | 16..988 | 4865 | 100 | Plus |
CG13123-RC | 1087 | CG13123-RC | 101..1066 | 16..988 | 4725 | 99.3 | Plus |
CG13123-RB | 996 | CG13123-RB | 45..975 | 58..988 | 4655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9791982..9792828 | 988..142 | 4235 | 100 | Minus |
2L | 23513712 | 2L | 9792881..9793007 | 142..16 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:55:49 has no hits.
BS01468.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:04 Download gff for
BS01468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-RA | 1..972 | 17..988 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:58 Download gff for
BS01468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-RA | 91..1074 | 16..1000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:51 Download gff for
BS01468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-RA | 102..1073 | 17..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:05 Download gff for
BS01468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-RA | 91..1074 | 16..1000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:17 Download gff for
BS01468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13123-RA | 102..1073 | 17..990 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:17 Download gff for
BS01468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9791980..9792827 | 143..990 | 99 | <- | Minus |
2L | 9792881..9793006 | 17..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:51 Download gff for
BS01468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9791980..9792827 | 143..990 | 99 | <- | Minus |
arm_2L | 9792881..9793006 | 17..142 | 100 | | Minus |
BS01468.pep Sequence
Translation from 16 to 987
> BS01468.pep
MDLRKLCRICFVDSASVDIREHRSGGSSDQTVLQLIEAMFGWNIALNLTE
ELPMICNDCLEDCLQQYAFFRKLTFANQQLLQLYNEAEVEMCQVKMDATE
EEPENQASDEFEILEEFRRIPLDYVVLDPDRPTETRQTRRRTDSCTKPSQ
RLANQDSLIVSEFLPATTAQPRLDLSDSQLEQLESPAYEMRTVDYAAVEL
KHYNLDEYNEANRLLDVEPSGSQAIYKCQYCPLAYASPQYLKTHVRNSHV
CKYCTTAFAKVRDLNEHIRQKHPHHQCVVCSNNFSTSSNLRAHLKKIHGV
QLPAQVALLDYRPASQDRDNPRS*
BS01468.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13123-PA | 323 | CG13123-PA | 1..323 | 1..323 | 1703 | 100 | Plus |
CG13123-PC | 270 | CG13123-PC | 1..270 | 54..323 | 1430 | 100 | Plus |
CG13123-PB | 270 | CG13123-PB | 1..270 | 54..323 | 1430 | 100 | Plus |