Clone Sequence Records
BS01469.3prime Sequence
926 bp (747 high quality bases) assembled on 2005-11-29
> BS01469.3prime
ATGGTCTAGAAAGCTTCGTCAATTGAATAACTCGCTTTCGTTTTCGTCCT
CTGCAAATATGGCAGTCATCTTGCCGGTGTTCGAAAATTGTGAATTCTCC
AGGTATCCTGCGCTGTCGAGGGCGTCAACTCCTTTCAGCCATTGGAGCTC
CTCGTCCTGGGACTCGTCTATTGCGCTTCTCTGGCTTCGATTCTTCGCAG
CAAGGGCCGGACTAAACTGCGGTTTTTGGCGGACAATCGGATCGTTGTGG
TGGCCACTGGCCAAGCCATGGCGTATCAACTGATTGCGCCGCATATAATC
TGCTCCGCAGACGGAGCATATATAGGCCTTACAGATACTATGGACGAAGA
GATGAACATCCCTGTTTTCGGGCCGTCCGAAGAGCTTTCCACAGATCGGA
CAGCCGTAGCTCTTCGCGGAGCCATGGGACGCCAAGTGCTTTCTATAATT
TACAGGATGGCTGAAGCGGGCACTGCAGGTGTCGCAAACGAGGTTCCGCT
CATTCTGGTGGACCGTCTTCACATGCTGATCACACTCCCGCCTCTGCTGG
AAACGCTTCTTGCAGCCCGGTTCTGGACAGGAGTGCAGGTACACCTTCCG
ATGAACGTTCTTCAGGTGACACTCCCTATTGCTGCGCTGCACAAAGCGCG
CCGGACACTCGGGACACGGATAGTTCCGCACGTCGTTGTGGGCATTCATG
TGATCCACAAGGGCGTTGTGCTTTTGGAAGACCCTTCCACACGCGTCGCA
GGCATGCTCCGACGCGGGCGTTTGCTGTCCACCCTGGTATCGGTGTGTGG
GCCGATGGGCGGCCAACTCCTCCCTGGTGAGGAATAGCGCTGGACAGCGT
CTGCAGACGAAGGACGGAGATCCGCCTTGCTGGTGCTGGCTTCTCTCATT
GAGTTCCTCGAACTGTAGCTCTTCTG
BS01469.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11398-PA | 990 | CG11398-RA | 83..990 | 926..19 | 4540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11398-RD | 3018 | CG11398-RD | 161..1068 | 926..19 | 4540 | 100 | Minus |
| CG11398-RA | 1487 | CG11398-RA | 161..1068 | 926..19 | 4540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1213939..1214793 | 19..873 | 4275 | 100 | Plus |
| X | 23542271 | X | 1214942..1214996 | 872..926 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:16:49 has no hits.
BS01469.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:51 Download gff for
BS01469.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11398-PA | 83..990 | 19..926 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:02 Download gff for
BS01469.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11398-PA | 83..990 | 19..926 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:41:57 Download gff for
BS01469.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11398-RA | 161..1077 | 10..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:44:54 Download gff for
BS01469.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11398-RA | 161..1077 | 10..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:44:54 Download gff for
BS01469.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1213930..1214792 | 10..872 | 99 | <- | Plus |
| X | 1214943..1214996 | 873..926 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:41:57 Download gff for
BS01469.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1107963..1108825 | 10..872 | 99 | <- | Plus |
| arm_X | 1108976..1109029 | 873..926 | 100 | | Plus |
BS01469.5prime Sequence
793 bp (790 high quality bases) assembled on 2005-11-29
> BS01469.5prime
GAAGTTATCAGTCGACATGACTGAAGTACAATATAAAGAGGCCGAGATCT
TGGCTCTACTACCACATACATATGAGGATGAGGAGCTGTCCTTAAACACA
GAAGAGCTACAGTTCGAGGAACTCAATGAGAGAAGCCAGCACCAGCAAGG
CGGATCTCCGTCCTTCGTCTGCAGACGCTGTCCAGCGCTATTCCTCACCA
GGGAGGAGTTGGCCGCCCATCGGCCCACACACCGATACCAGGGTGGACAG
CAAACGCCCGCGTCGGAGCATGCCTGCGACGCGTGTGGAAGGGTCTTCCA
AAAGCACAACGCCCTTGTGGATCACATGAATGCCCACAACGACGTGCGGA
ACTATCCGTGTCCCGAGTGTCCGGCGCGCTTTGTGCAGCGCAGCAATAGG
GAGTGTCACCTGAAGAACGTTCATCGGAAGGTGTACCTGCACTCCTGTCC
AGAACCGGGCTGCAAGAAGCGTTTCCAGCAGAGGCGGGAGTGTGATCAGC
ATGTGAAGACGGTCCACCAGAATGAGCGGAACCTCGTTTGCGACACCTGC
AGTGCCCGCTTCAGCCATCCTGTAAATTATAGAAAGCACTTGGCGTCCCA
TGGCTCCGCGAAGAGCTACGGCTGTCCGATCTGTGGAAAGCTCTTCGGAC
GGCCCGAAAACAGGGATGTTCATCTCTTCGTCCATAGTATCTGTAAGGCC
TATATATGCTCCGTCTGCGGAGCAGATTATATGCGGCGCAATCAGTTGAT
ACGCCATGGCTTGGCCAGTGGCCACCACAACGATCCGATTGTC
BS01469.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11398-PA | 990 | CG11398-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:13:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11398-RD | 3018 | CG11398-RD | 79..855 | 17..793 | 3885 | 100 | Plus |
| CG11398-RA | 1487 | CG11398-RA | 79..855 | 17..793 | 3885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:12:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1214152..1214793 | 793..152 | 3210 | 100 | Minus |
| X | 23542271 | X | 1214942..1215078 | 153..17 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:13:00 has no hits.
BS01469.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:52 Download gff for
BS01469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11398-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:04 Download gff for
BS01469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11398-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:43:00 Download gff for
BS01469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11398-RA | 73..855 | 8..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:22 Download gff for
BS01469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11398-RA | 73..855 | 8..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:22 Download gff for
BS01469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1214152..1214792 | 153..793 | 100 | <- | Minus |
| X | 1214943..1215084 | 8..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:43:00 Download gff for
BS01469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1108185..1108825 | 153..793 | 100 | <- | Minus |
| arm_X | 1108976..1109117 | 8..152 | 97 | | Minus |
BS01469.complete Sequence
1024 bp (1024 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634620
> BS01469.complete
GAAGTTATCAGTCGACATGACTGAAGTACAATATAAAGAGGCCGAGATCT
TGGCTCTACTACCACATACATATGAGGATGAGGAGCTGTCCTTAAACACA
GAAGAGCTACAGTTCGAGGAACTCAATGAGAGAAGCCAGCACCAGCAAGG
CGGATCTCCGTCCTTCGTCTGCAGACGCTGTCCAGCGCTATTCCTCACCA
GGGAGGAGTTGGCCGCCCATCGGCCCACACACCGATACCAGGGTGGACAG
CAAACGCCCGCGTCGGAGCATGCCTGCGACGCGTGTGGAAGGGTCTTCCA
AAAGCACAACGCCCTTGTGGATCACATGAATGCCCACAACGACGTGCGGA
ACTATCCGTGTCCCGAGTGTCCGGCGCGCTTTGTGCAGCGCAGCAATAGG
GAGTGTCACCTGAAGAACGTTCATCGGAAGGTGTACCTGCACTCCTGTCC
AGAACCGGGCTGCAAGAAGCGTTTCCAGCAGAGGCGGGAGTGTGATCAGC
ATGTGAAGACGGTCCACCAGAATGAGCGGAACCTCGTTTGCGACACCTGC
AGTGCCCGCTTCAGCCATCCTGTAAATTATAGAAAGCACTTGGCGTCCCA
TGGCTCCGCGAAGAGCTACGGCTGTCCGATCTGTGGAAAGCTCTTCGGAC
GGCCCGAAAACAGGGATGTTCATCTCTTCGTCCATAGTATCTGTAAGGCC
TATATATGCTCCGTCTGCGGAGCAGATTATATGCGGCGCAATCAGTTGAT
ACGCCATGGCTTGGCCAGTGGCCACCACAACGATCCGATTGTCCGCCAAA
AACCGCAGTTTAGTCCGGCCCTTGCTGCGAAGAATCGAAGCCAGAGAAGC
GCAATAGACGAGTCCCAGGACGAGGAGCTCCAATGGCTGAAAGGAGTTGA
CGCCCTCGACAGCGCAGGATACCTGGAGAATTCACAATTTTCGAACACCG
GCAAGATGACTGCCATATTTGCAGAGGACGAAAACGAAAGCGAGTTATTC
AATTGACGAAGCTTTCTAGACCAT
BS01469.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:55:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11398-RD | 990 | CG11398-PD | 1..990 | 17..1006 | 4950 | 100 | Plus |
| CG11398-RA | 990 | CG11398-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:55:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11398-RD | 3018 | CG11398-RD | 79..1068 | 17..1006 | 4950 | 100 | Plus |
| CG11398-RA | 1487 | CG11398-RA | 79..1068 | 17..1006 | 4950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:55:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1213939..1214793 | 1006..152 | 4275 | 100 | Minus |
| X | 23542271 | X | 1214942..1215078 | 153..17 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:55:18 has no hits.
BS01469.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:35:06 Download gff for
BS01469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11398-RA | 1..990 | 17..1006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:20:00 Download gff for
BS01469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11398-RA | 48..1052 | 8..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:28 Download gff for
BS01469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11398-RA | 79..1068 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:35:06 Download gff for
BS01469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11398-RA | 48..1052 | 8..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:54 Download gff for
BS01469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11398-RA | 79..1068 | 17..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:54 Download gff for
BS01469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1214943..1215078 | 17..152 | 100 | | Minus |
| X | 1213937..1214792 | 153..1008 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:28 Download gff for
BS01469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1108976..1109111 | 17..152 | 100 | | Minus |
| arm_X | 1107970..1108825 | 153..1008 | 99 | <- | Minus |
BS01469.pep Sequence
Translation from 16 to 1005
> BS01469.pep
MTEVQYKEAEILALLPHTYEDEELSLNTEELQFEELNERSQHQQGGSPSF
VCRRCPALFLTREELAAHRPTHRYQGGQQTPASEHACDACGRVFQKHNAL
VDHMNAHNDVRNYPCPECPARFVQRSNRECHLKNVHRKVYLHSCPEPGCK
KRFQQRRECDQHVKTVHQNERNLVCDTCSARFSHPVNYRKHLASHGSAKS
YGCPICGKLFGRPENRDVHLFVHSICKAYICSVCGADYMRRNQLIRHGLA
SGHHNDPIVRQKPQFSPALAAKNRSQRSAIDESQDEELQWLKGVDALDSA
GYLENSQFSNTGKMTAIFAEDENESELFN*
BS01469.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11398-PD | 329 | CG11398-PD | 1..329 | 1..329 | 1798 | 100 | Plus |
| CG11398-PA | 329 | CG11398-PA | 1..329 | 1..329 | 1798 | 100 | Plus |
| Meics-PB | 571 | CG8474-PB | 223..418 | 45..247 | 274 | 28.6 | Plus |
| Meics-PA | 583 | CG8474-PA | 235..430 | 45..247 | 274 | 28.6 | Plus |
| CG15269-PA | 587 | CG15269-PA | 297..485 | 49..247 | 269 | 29.9 | Plus |
| Meics-PB | 571 | CG8474-PB | 284..483 | 46..256 | 265 | 28.9 | Plus |
| Meics-PA | 583 | CG8474-PA | 296..495 | 46..256 | 265 | 28.9 | Plus |
| Meics-PB | 571 | CG8474-PB | 340..563 | 46..247 | 186 | 23.3 | Plus |
| Meics-PA | 583 | CG8474-PA | 352..575 | 46..247 | 186 | 23.3 | Plus |
| Meics-PB | 571 | CG8474-PB | 410..571 | 33..199 | 156 | 30.1 | Plus |
| Meics-PA | 583 | CG8474-PA | 422..583 | 33..199 | 156 | 30.1 | Plus |
