Clone Sequence Records
BS01476.3prime Sequence
800 bp (788 high quality bases) assembled on 2005-11-29
> BS01476.3prime
ATGGTCTAGAAAGCTTCGTCACGTGTCAATCTCGCCCTGCATGCTCTTGA
TGTACTCGCATGCCTTGATCAGGATCTGCGATTTGGAGTCATTGGGCGGC
GCTCGTCCGCTGGAACTGCTGGCATTGCCTTTGGAATGGCTACTTCCGTT
GGTACTCGTACTTCCGCTGGTGCTGGGACTCGTGCTGGCCTCGCTGAAAC
TGGAGCTGGAGCTCAGACTGGGCAGCATCTCCTTGAGCTTGAAGATCCAG
CTGTTGATCTTGTCGCGGCGCCGGCGTTCGACCTCGTTGTGCGTGGCACG
ACGTTTATCATCGCGTTTCTTGTACGCCTCCAGTTTGCTGGATGGTGTTT
GGCCAGCTGATTCTGGCTGGGATCGGGCTTGGGCGTGAGCATGGCCATGG
CCATGACCATTGCCATGGGAGCCATACAGGACACTGGTGGTGGTGGTGGT
GCTAGTGGTGCTGGTGGTGGGTGTTGATGTTACCTGGAATGGGAGGATTC
ACGGTCTGGGCGGTTATTACCGCGGACTGTGTGCTGGAGGAAGTTGTAAC
AGATGGAAGGAGCGGCTTTTCGCTTAGCGTATCTAGTTCCAGCTTGATGG
CCGCCTTCGTCGGCGGCTCACCCATTAAGCTGCCGGTTTCCTTGACCAAA
TATATCTCACAGCCAGTGGGCAGCTGCAGATTGTTGGGCAGCTGCAAATT
GCTAGGCAGCAGCGAATGGATATCTAGATCACATCCCGGTTCCTGTTTAA
TCGTATAGTACTCCTGCGAATCGTCCGAGTTCTCGTCTCCGCAAATGGTG
BS01476.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17592-PA | 1047 | Usf-RA | 596..1047 | 470..19 | 2260 | 100 | Minus |
CG17592-PB | 1314 | Usf-RB | 596..1044 | 470..22 | 2245 | 100 | Minus |
CG17592-PA | 1047 | Usf-RA | 267..597 | 800..470 | 1655 | 100 | Minus |
CG17592-PB | 1314 | Usf-RB | 267..597 | 800..470 | 1655 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:31:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Usf-RC | 3617 | CG17592-RC | 633..1410 | 800..22 | 3870 | 99.9 | Minus |
Usf-RB | 2954 | CG17592-RB | 633..1410 | 800..22 | 3870 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:31:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4547382..4548162 | 19..800 | 3860 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:31:32 has no hits.
BS01476.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:57 Download gff for
BS01476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Usf-PA | 267..1047 | 19..800 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:10 Download gff for
BS01476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17592-PA | 267..1047 | 19..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:14:56 Download gff for
BS01476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Usf-RB | 608..1390 | 17..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:38 Download gff for
BS01476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Usf-RB | 633..1415 | 17..800 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:38 Download gff for
BS01476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4547382..4548162 | 19..800 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:14:56 Download gff for
BS01476.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4441415..4442195 | 19..800 | 99 | | Plus |
BS01476.5prime Sequence
817 bp (744 high quality bases) assembled on 2005-11-29
> BS01476.5prime
GAAGTTATCAGTCGACATGAATGTTCACAAGCGGCCACGTCTGAATATGG
AATTCGGCTCCTCCACCAGCAATACCAACACTTCCACATCCCCGTCCTCC
GTAAATATCAGCAATGCGAATCCAACAGCTGGACCTGGCCTCATGACCAT
TACCAATCACCACACCGCTGATTTGTCAGAGGCCCTGGTCCACAGTTCCT
TTGCCAATGGTCAGCAAAGTCTGATTCTCACCAGCGACACGGGAAATCCG
CTGATGAATAGCCAAGGTGCTCAGATATTTCTCACCATTTGCGGAGACGA
GAACTCGGACGATTCGCAGGAGTACTATACGATTAAACAGGAACCGGGAT
GTGATCTAGATATCCATTCGCTGCTGCCTAGCAATTTGCAGCTGCCCAAC
AATCTGCAGCTGCCCACTGGCTGTGAGATATATTTGGTCAAGGAAACCGG
CAGCTTAATGGGTGAGCCGCCGACGAAGGCGGCCATCAAGCTGGAACTAG
ATACGCTAAGCGAAAAGCCGCTCCTTCCATCTGTTACAACTTCCTCCAGC
ACACAGTCCGCGGTAATAACCGCCCAGACCGTGAATCCTCCCATTCCAGG
TAACATCAACACCACCACCAGCACCACTAGCACCACCACCACCACCAGTG
TCCTGTATGGCTCCCATGGCAATGGTCATGGCCATGGCCATGCTCACGCC
CAAGCCCGATCCCAGCCAGAATCAGCTGGCCAAACACCATCCAGCAAACT
GGAGGCGTACAAGAAACGCGATGATAAACGTCGTGGCACGCACAACGAGG
TCGAACGCCGGCGCCGC
BS01476.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17592-PA | 1047 | Usf-RA | 1..801 | 17..817 | 3980 | 99.8 | Plus |
CG17592-PB | 1314 | Usf-RB | 1..801 | 17..817 | 3980 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Usf-RC | 3617 | CG17592-RC | 367..1167 | 17..817 | 3990 | 99.9 | Plus |
Usf-RB | 2954 | CG17592-RB | 367..1167 | 17..817 | 3990 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4547628..4548428 | 817..17 | 3990 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:36:55 has no hits.
BS01476.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:58 Download gff for
BS01476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Usf-PA | 1..801 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:11 Download gff for
BS01476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17592-PB | 1..801 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:50:42 Download gff for
BS01476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Usf-RB | 342..1142 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:53 Download gff for
BS01476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Usf-RB | 367..1167 | 17..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:53 Download gff for
BS01476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4547628..4548428 | 17..817 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:50:42 Download gff for
BS01476.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4441661..4442461 | 17..817 | 99 | | Minus |
BS01476.complete Sequence
1081 bp (1081 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634622
> BS01476.complete
GAAGTTATCAGTCGACATGAATGTTCACAAGCGGCCACGTCTGAATATGG
AATTCGGCTCCTCCACCAGCAATACCAACACTTCCACATCCCCGTCCTCC
GTAAATATCAGCAATGCGAATCCAACAGCTGGACCTGGCCTCATGACCAT
TACCAATCACCACACCGCTGATTTGTCAGAGGCCCTGGTCCACAGTTCCT
TTGCCAATGGTCAGCAAAGTCTGATTCTCACCAGCGACACGGGAAATCCG
CTGATGAATAGCCAAGGTGCTCAGATATTTCTCACCATTTGCGGAGACGA
GAACTCGGACGATTCGCAGGAGTACTATACGATTAAACAGGAACCGGGAT
GTGATCTAGATATCCATTCGCTGCTGCCTAGCAATTTGCAGCTGCCCAAC
AATCTGCAGCTGCCCACTGGCTGTGAGATATATTTGGTCAAGGAAACCGG
CAGCTTAATGGGTGAGCCGCCGACGAAGGCGGCCATCAAGCTGGAACTAG
ATACGCTAAGCGAAAAGCCGCTCCTTCCATCTGTTACAACTTCCTCCAGC
ACACAGTCCGCGGTAATAACCGCCCAGACCGTGAATCCTCCCATTCCAGG
TAACATCAACACCACCACCAGCACCACTAGCACCACCACCACCACCAGTG
TCCTGTATGGCTCCCATGGCAATGGTCATGGCCATGGCCATGCTCACGCC
CAAGCCCGATCCCAGCCAGAATCAGCTGGCCAAACACCATCCAGCAAACT
GGAGGCGTACAAGAAACGCGATGATAAACGTCGTGCCACGCACAACGAGG
TCGAACGCCGGCGCCGCGACAAGATCAACAGCTGGATCTTCAAGCTCAAG
GAGATGCTGCCCAGTCTGAGCTCCAGCTCCAGTTTCAGCGAGGCCAGCAC
GAGTCCCAGCACCAGCGGAAGTACGAGTACCAACGGAAGTAGCCATTCCA
AAGGCAATGCCAGCAGTTCCAGCGGACGAGCGCCGCCCAATGACTCCAAA
TCGCAGATCCTGATCAAGGCATGCGAGTACATCAAGAGCATGCAGGGCGA
GATTGACACGTGACGAAGCTTTCTAGACCAT
BS01476.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Usf-RC | 1314 | CG17592-PC | 1..1044 | 17..1060 | 5220 | 100 | Plus |
Usf-RB | 1314 | CG17592-PB | 1..1044 | 17..1060 | 5220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Usf-RC | 3617 | CG17592-RC | 367..1410 | 17..1060 | 5220 | 100 | Plus |
Usf-RB | 2954 | CG17592-RB | 367..1410 | 17..1060 | 5220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4547382..4548428 | 1063..17 | 5235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:07:55 has no hits.
BS01476.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:52 Download gff for
BS01476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Usf-RA | 1..1047 | 17..1063 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:44 Download gff for
BS01476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Usf-RA | 831..1877 | 17..1063 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:55 Download gff for
BS01476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Usf-RB | 342..1390 | 17..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:52 Download gff for
BS01476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Usf-RA | 831..1877 | 17..1063 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:22 Download gff for
BS01476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Usf-RB | 367..1415 | 17..1065 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:22 Download gff for
BS01476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4547381..4548428 | 17..1065 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:55 Download gff for
BS01476.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4441414..4442461 | 17..1065 | 99 | | Minus |
BS01476.pep Sequence
Translation from 16 to 1062
> BS01476.pep
MNVHKRPRLNMEFGSSTSNTNTSTSPSSVNISNANPTAGPGLMTITNHHT
ADLSEALVHSSFANGQQSLILTSDTGNPLMNSQGAQIFLTICGDENSDDS
QEYYTIKQEPGCDLDIHSLLPSNLQLPNNLQLPTGCEIYLVKETGSLMGE
PPTKAAIKLELDTLSEKPLLPSVTTSSSTQSAVITAQTVNPPIPGNINTT
TSTTSTTTTTSVLYGSHGNGHGHGHAHAQARSQPESAGQTPSSKLEAYKK
RDDKRRATHNEVERRRRDKINSWIFKLKEMLPSLSSSSSFSEASTSPSTS
GSTSTNGSSHSKGNASSSSGRAPPNDSKSQILIKACEYIKSMQGEIDT*
BS01476.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Usf-PC | 437 | CG17592-PC | 1..348 | 1..348 | 1787 | 100 | Plus |
Usf-PB | 437 | CG17592-PB | 1..348 | 1..348 | 1787 | 100 | Plus |