Clone BS01476 Report

Search the DGRC for BS01476

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:14
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptUsf-RA
Protein status:BS01476.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01476.3prime Sequence

800 bp (788 high quality bases) assembled on 2005-11-29

> BS01476.3prime
ATGGTCTAGAAAGCTTCGTCACGTGTCAATCTCGCCCTGCATGCTCTTGA
TGTACTCGCATGCCTTGATCAGGATCTGCGATTTGGAGTCATTGGGCGGC
GCTCGTCCGCTGGAACTGCTGGCATTGCCTTTGGAATGGCTACTTCCGTT
GGTACTCGTACTTCCGCTGGTGCTGGGACTCGTGCTGGCCTCGCTGAAAC
TGGAGCTGGAGCTCAGACTGGGCAGCATCTCCTTGAGCTTGAAGATCCAG
CTGTTGATCTTGTCGCGGCGCCGGCGTTCGACCTCGTTGTGCGTGGCACG
ACGTTTATCATCGCGTTTCTTGTACGCCTCCAGTTTGCTGGATGGTGTTT
GGCCAGCTGATTCTGGCTGGGATCGGGCTTGGGCGTGAGCATGGCCATGG
CCATGACCATTGCCATGGGAGCCATACAGGACACTGGTGGTGGTGGTGGT
GCTAGTGGTGCTGGTGGTGGGTGTTGATGTTACCTGGAATGGGAGGATTC
ACGGTCTGGGCGGTTATTACCGCGGACTGTGTGCTGGAGGAAGTTGTAAC
AGATGGAAGGAGCGGCTTTTCGCTTAGCGTATCTAGTTCCAGCTTGATGG
CCGCCTTCGTCGGCGGCTCACCCATTAAGCTGCCGGTTTCCTTGACCAAA
TATATCTCACAGCCAGTGGGCAGCTGCAGATTGTTGGGCAGCTGCAAATT
GCTAGGCAGCAGCGAATGGATATCTAGATCACATCCCGGTTCCTGTTTAA
TCGTATAGTACTCCTGCGAATCGTCCGAGTTCTCGTCTCCGCAAATGGTG

BS01476.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17592-PA 1047 Usf-RA 596..1047 470..19 2260 100 Minus
CG17592-PB 1314 Usf-RB 596..1044 470..22 2245 100 Minus
CG17592-PA 1047 Usf-RA 267..597 800..470 1655 100 Minus
CG17592-PB 1314 Usf-RB 267..597 800..470 1655 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
Usf-RC 3617 CG17592-RC 633..1410 800..22 3870 99.9 Minus
Usf-RB 2954 CG17592-RB 633..1410 800..22 3870 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4547382..4548162 19..800 3860 99.9 Plus
Blast to na_te.dros performed on 2015-02-11 11:31:32 has no hits.

BS01476.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:57 Download gff for BS01476.3prime
Subject Subject Range Query Range Percent Splice Strand
Usf-PA 267..1047 19..800 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:10 Download gff for BS01476.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17592-PA 267..1047 19..800 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:14:56 Download gff for BS01476.3prime
Subject Subject Range Query Range Percent Splice Strand
Usf-RB 608..1390 17..800 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:38 Download gff for BS01476.3prime
Subject Subject Range Query Range Percent Splice Strand
Usf-RB 633..1415 17..800 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:38 Download gff for BS01476.3prime
Subject Subject Range Query Range Percent Splice Strand
X 4547382..4548162 19..800 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:14:56 Download gff for BS01476.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4441415..4442195 19..800 99   Plus

BS01476.5prime Sequence

817 bp (744 high quality bases) assembled on 2005-11-29

> BS01476.5prime
GAAGTTATCAGTCGACATGAATGTTCACAAGCGGCCACGTCTGAATATGG
AATTCGGCTCCTCCACCAGCAATACCAACACTTCCACATCCCCGTCCTCC
GTAAATATCAGCAATGCGAATCCAACAGCTGGACCTGGCCTCATGACCAT
TACCAATCACCACACCGCTGATTTGTCAGAGGCCCTGGTCCACAGTTCCT
TTGCCAATGGTCAGCAAAGTCTGATTCTCACCAGCGACACGGGAAATCCG
CTGATGAATAGCCAAGGTGCTCAGATATTTCTCACCATTTGCGGAGACGA
GAACTCGGACGATTCGCAGGAGTACTATACGATTAAACAGGAACCGGGAT
GTGATCTAGATATCCATTCGCTGCTGCCTAGCAATTTGCAGCTGCCCAAC
AATCTGCAGCTGCCCACTGGCTGTGAGATATATTTGGTCAAGGAAACCGG
CAGCTTAATGGGTGAGCCGCCGACGAAGGCGGCCATCAAGCTGGAACTAG
ATACGCTAAGCGAAAAGCCGCTCCTTCCATCTGTTACAACTTCCTCCAGC
ACACAGTCCGCGGTAATAACCGCCCAGACCGTGAATCCTCCCATTCCAGG
TAACATCAACACCACCACCAGCACCACTAGCACCACCACCACCACCAGTG
TCCTGTATGGCTCCCATGGCAATGGTCATGGCCATGGCCATGCTCACGCC
CAAGCCCGATCCCAGCCAGAATCAGCTGGCCAAACACCATCCAGCAAACT
GGAGGCGTACAAGAAACGCGATGATAAACGTCGTGGCACGCACAACGAGG
TCGAACGCCGGCGCCGC

BS01476.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17592-PA 1047 Usf-RA 1..801 17..817 3980 99.8 Plus
CG17592-PB 1314 Usf-RB 1..801 17..817 3980 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
Usf-RC 3617 CG17592-RC 367..1167 17..817 3990 99.9 Plus
Usf-RB 2954 CG17592-RB 367..1167 17..817 3990 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4547628..4548428 817..17 3990 99.9 Minus
Blast to na_te.dros performed on 2015-02-11 17:36:55 has no hits.

BS01476.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:08:58 Download gff for BS01476.5prime
Subject Subject Range Query Range Percent Splice Strand
Usf-PA 1..801 17..817 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:11 Download gff for BS01476.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17592-PB 1..801 17..817 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:50:42 Download gff for BS01476.5prime
Subject Subject Range Query Range Percent Splice Strand
Usf-RB 342..1142 17..817 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:53 Download gff for BS01476.5prime
Subject Subject Range Query Range Percent Splice Strand
Usf-RB 367..1167 17..817 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:53 Download gff for BS01476.5prime
Subject Subject Range Query Range Percent Splice Strand
X 4547628..4548428 17..817 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:50:42 Download gff for BS01476.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4441661..4442461 17..817 99   Minus

BS01476.complete Sequence

1081 bp (1081 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634622

> BS01476.complete
GAAGTTATCAGTCGACATGAATGTTCACAAGCGGCCACGTCTGAATATGG
AATTCGGCTCCTCCACCAGCAATACCAACACTTCCACATCCCCGTCCTCC
GTAAATATCAGCAATGCGAATCCAACAGCTGGACCTGGCCTCATGACCAT
TACCAATCACCACACCGCTGATTTGTCAGAGGCCCTGGTCCACAGTTCCT
TTGCCAATGGTCAGCAAAGTCTGATTCTCACCAGCGACACGGGAAATCCG
CTGATGAATAGCCAAGGTGCTCAGATATTTCTCACCATTTGCGGAGACGA
GAACTCGGACGATTCGCAGGAGTACTATACGATTAAACAGGAACCGGGAT
GTGATCTAGATATCCATTCGCTGCTGCCTAGCAATTTGCAGCTGCCCAAC
AATCTGCAGCTGCCCACTGGCTGTGAGATATATTTGGTCAAGGAAACCGG
CAGCTTAATGGGTGAGCCGCCGACGAAGGCGGCCATCAAGCTGGAACTAG
ATACGCTAAGCGAAAAGCCGCTCCTTCCATCTGTTACAACTTCCTCCAGC
ACACAGTCCGCGGTAATAACCGCCCAGACCGTGAATCCTCCCATTCCAGG
TAACATCAACACCACCACCAGCACCACTAGCACCACCACCACCACCAGTG
TCCTGTATGGCTCCCATGGCAATGGTCATGGCCATGGCCATGCTCACGCC
CAAGCCCGATCCCAGCCAGAATCAGCTGGCCAAACACCATCCAGCAAACT
GGAGGCGTACAAGAAACGCGATGATAAACGTCGTGCCACGCACAACGAGG
TCGAACGCCGGCGCCGCGACAAGATCAACAGCTGGATCTTCAAGCTCAAG
GAGATGCTGCCCAGTCTGAGCTCCAGCTCCAGTTTCAGCGAGGCCAGCAC
GAGTCCCAGCACCAGCGGAAGTACGAGTACCAACGGAAGTAGCCATTCCA
AAGGCAATGCCAGCAGTTCCAGCGGACGAGCGCCGCCCAATGACTCCAAA
TCGCAGATCCTGATCAAGGCATGCGAGTACATCAAGAGCATGCAGGGCGA
GATTGACACGTGACGAAGCTTTCTAGACCAT

BS01476.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Usf-RC 1314 CG17592-PC 1..1044 17..1060 5220 100 Plus
Usf-RB 1314 CG17592-PB 1..1044 17..1060 5220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
Usf-RC 3617 CG17592-RC 367..1410 17..1060 5220 100 Plus
Usf-RB 2954 CG17592-RB 367..1410 17..1060 5220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4547382..4548428 1063..17 5235 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:07:55 has no hits.

BS01476.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:52 Download gff for BS01476.complete
Subject Subject Range Query Range Percent Splice Strand
Usf-RA 1..1047 17..1063 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:44 Download gff for BS01476.complete
Subject Subject Range Query Range Percent Splice Strand
Usf-RA 831..1877 17..1063 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:55 Download gff for BS01476.complete
Subject Subject Range Query Range Percent Splice Strand
Usf-RB 342..1390 17..1065 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:52 Download gff for BS01476.complete
Subject Subject Range Query Range Percent Splice Strand
Usf-RA 831..1877 17..1063 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:22 Download gff for BS01476.complete
Subject Subject Range Query Range Percent Splice Strand
Usf-RB 367..1415 17..1065 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:22 Download gff for BS01476.complete
Subject Subject Range Query Range Percent Splice Strand
X 4547381..4548428 17..1065 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:55 Download gff for BS01476.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4441414..4442461 17..1065 99   Minus

BS01476.pep Sequence

Translation from 16 to 1062

> BS01476.pep
MNVHKRPRLNMEFGSSTSNTNTSTSPSSVNISNANPTAGPGLMTITNHHT
ADLSEALVHSSFANGQQSLILTSDTGNPLMNSQGAQIFLTICGDENSDDS
QEYYTIKQEPGCDLDIHSLLPSNLQLPNNLQLPTGCEIYLVKETGSLMGE
PPTKAAIKLELDTLSEKPLLPSVTTSSSTQSAVITAQTVNPPIPGNINTT
TSTTSTTTTTSVLYGSHGNGHGHGHAHAQARSQPESAGQTPSSKLEAYKK
RDDKRRATHNEVERRRRDKINSWIFKLKEMLPSLSSSSSFSEASTSPSTS
GSTSTNGSSHSKGNASSSSGRAPPNDSKSQILIKACEYIKSMQGEIDT*

BS01476.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Usf-PC 437 CG17592-PC 1..348 1..348 1787 100 Plus
Usf-PB 437 CG17592-PB 1..348 1..348 1787 100 Plus