Clone BS01478 Report

Search the DGRC for BS01478

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:14
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptDip3-RA
Protein status:BS01478.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01478.3prime Sequence

778 bp (777 high quality bases) assembled on 2005-11-29

> BS01478.3prime
ATGGTCTAGAAAGCTTCGTTAGCTTTCGTCCTTGTACTTGGCGTCCTTCA
GAATGTTGGCGAACTCGAACTTGACCCGCTCCCGTTCCGATCTCCGCATG
CTGCGCAGTGTGTCCACCAGCGATAGGCAGTAGAGCTCGATGGGATCGTT
GAAGGACGACGTCACTTGGGTCTGAAGCGGCGCTTGGGTTGCCTTGCGCT
TGAAGGGATTGGTCAGAAAATCGCTGGGTAATGCGCGTCTGATAGCCGCA
GGCTTGTAAATGGGCTCAATGGTCACTTCTCCGTTGGACAGCGAGCTATT
CTTGAACGGCTTTTGCTCCTGTGTCTGCTGCTGTTCTAGATGCACCTCCT
GGCCATAGCCATTGCCCATTACAACCATCGGCGTTAGCAGGGGCGAGGAG
GCCGGCGAGCTGGCTTGGTCATGTTCGTGGCTGTGATTGCTGCTGCTGGT
GCCGTTCAGTGTCGTCGGCAGGGATAATTGCTGCTTGGACTCTCCCATGA
CCAGCTGCAACTCGGGCACAATCTCGTTGTCGTCGCTATTTGAGCCATCG
TCGCTGTTGTCCAGCTCGATGATGTCGTAGCCCTCGGAGGCGTCGATCTT
TAGGTGCTCCGGATCGGGATACAAAAAGCTATTGCTGTCGTTGTCACTTC
CCATTCCATTCTGTTGGGCCACGTAGCTCTGGGATTTCTTCACATTGTAG
GTTTGGGCCGTGTTCTGCAGAAAGGATAGATCCTCAGTGAAGCGCCGCTT
GCGTACGTTCGGATTCGCCTGGCCCGTC

BS01478.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12767-PA 1047 Dip3-RA 288..1047 778..19 3800 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dip3-RA 1471 CG12767-RA 471..1230 778..19 3800 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18129246..18130005 778..19 3800 100 Minus
Blast to na_te.dros performed 2015-01-30 16:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2385 351..295 116 69 Minus
roo 9092 roo DM_ROO 9092bp 1064..1121 351..295 116 69 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6791 351..295 109 68.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6812 351..295 109 68.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6833 351..295 109 68.4 Minus

BS01478.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:01 Download gff for BS01478.3prime
Subject Subject Range Query Range Percent Splice Strand
Dip3-PA 288..1047 19..778 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:15 Download gff for BS01478.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12767-PA 288..1047 19..778 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:29:12 Download gff for BS01478.3prime
Subject Subject Range Query Range Percent Splice Strand
Dip3-RA 471..1233 13..778 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:54:27 Download gff for BS01478.3prime
Subject Subject Range Query Range Percent Splice Strand
Dip3-RA 471..1233 13..778 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:54:27 Download gff for BS01478.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18129246..18130008 13..778 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:29:12 Download gff for BS01478.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14016751..14017513 13..778 99   Minus

BS01478.5prime Sequence

823 bp (711 high quality bases) assembled on 2005-11-29

> BS01478.5prime
GAAGTTATCAGTCGACATGAGCCGAAAGAACGGAAACCAGGACACCTTTC
CCAAGACGGAGAAGATGCAGCGCTACTACGCGGAGCGCGAGACCACAGGA
CCCGAGTTCGACGATCGCCTGATAAAGCTTGTGCGCGCCAATCCGGCCAT
CTATGATGTCAGCCATCCGCACTATCGCCGTAATCCGGTGCGGGTGGACA
TATGGGATCGCATTGCCAACGAACTGGGCGCCTCCTCCCGATTTCTGCAA
ACCAAATGGAAGAACATACGATACAACTATCTGCAGGAGGTCAAGGCGAT
TGAGACGGGCCAGGCGAATCCGAACGTACGCAAGCGGCGCTTCACTGAGG
ATCTATCCTTTCTGCAGAACACGGCCCAAACCTACAATGTGAAGAAATCC
CAGAGCTACGTGGCCCAACAGAATGGAATGGGAAGTGACAACGACAGCAA
TAGCTTTTTGTATCCCGATCCGGAGCACCTAAAGATCGACGCCTCCGAGG
GCTACGACATCATCGAGCTGGACAACAGCGACGATGGCTCAAATAGCGAC
GACAACGAGATTGTGCCCGAGTTGCAGCTGGTCATGGGAGAGTCCAAGCA
GCAATTATCCCTGCCGACGACACTGAACGGCACCAGCAGCAGCAATCACA
GCCACGAACATGACCAAGCCAGCTCGCCGGCCTCCTCGCCCCTGCTAACG
CCGATGGTTGTAATGGGCAATGGCTATGGCCAGGAGGTGCATCTAGAACA
GCAGCAGACACAGGAGCAAAAGCCGTTCAAGAATAGCTCGCTGTCCAACG
GAGAAGTGACCATTGAGCCCATT

BS01478.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12767-PA 1047 Dip3-RA 1..807 17..823 4035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dip3-RA 1471 CG12767-RA 180..990 13..823 4040 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18129179..18129765 237..823 2935 100 Plus
2R 25286936 2R 18128975..18129101 110..236 635 100 Plus
2R 25286936 2R 18128673..18128770 13..110 475 99 Plus
Blast to na_te.dros performed 2015-02-12 05:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2385 731..787 116 69 Plus
roo 9092 roo DM_ROO 9092bp 1064..1121 731..787 116 69 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6791 731..787 109 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6812 731..787 109 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6833 731..787 109 68.4 Plus

BS01478.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:02 Download gff for BS01478.5prime
Subject Subject Range Query Range Percent Splice Strand
Dip3-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:16 Download gff for BS01478.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12767-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:38:03 Download gff for BS01478.5prime
Subject Subject Range Query Range Percent Splice Strand
Dip3-RA 171..990 2..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:06:42 Download gff for BS01478.5prime
Subject Subject Range Query Range Percent Splice Strand
Dip3-RA 171..990 2..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:06:42 Download gff for BS01478.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18128664..18128770 2..110 95 -> Plus
2R 18128976..18129101 111..236 100 -> Plus
2R 18129179..18129765 237..823 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:38:03 Download gff for BS01478.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14016169..14016275 2..110 95 -> Plus
arm_2R 14016481..14016606 111..236 100 -> Plus
arm_2R 14016684..14017270 237..823 100   Plus

BS01478.complete Sequence

1081 bp (1081 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634623

> BS01478.complete
GAAGTTATCAGTCGACATGAGCCGAAAGAACGGAAACCAGGACACCTTTC
CCAAGACGGAGAAGATGCAGCGCTACTACGCGGAGCGCGAGACCACAGGA
CCCGAGTTCGACGATCGCCTGATAAAGCTTGTGCGCGCCAATCCGGCCAT
CTATGATGTCAGCCATCCGCACTATCGCCGTAATCCGGTGCGGGTGGACA
TATGGGATCGCATTGCCAACGAACTGGGCGCCTCCTCCCGATTTCTGCAA
ACCAAATGGAAGAACATACGATACAACTATCTGCAGGAGGTCAAGGCGAT
TGAGACGGGCCAGGCGAATCCGAACGTACGCAAGCGGCGCTTCACTGAGG
ATCTATCCTTTCTGCAGAACACGGCCCAAACCTACAATGTGAAGAAATCC
CAGAGCTACGTGGCCCAACAGAATGGAATGGGAAGTGACAACGACAGCAA
TAGCTTTTTGTATCCCGATCCGGAGCACCTAAAGATCGACGCCTCCGAGG
GCTACGACATCATCGAGCTGGACAACAGCGACGATGGCTCAAATAGCGAC
GACAACGAGATTGTGCCCGAGTTGCAGCTGGTCATGGGAGAGTCCAAGCA
GCAATTATCCCTGCCGACGACACTGAACGGCACCAGCAGCAGCAATCACA
GCCACGAACATGACCAAGCCAGCTCGCCGGCCTCCTCGCCCCTGCTAACG
CCGATGGTTGTAATGGGCAATGGCTATGGCCAGGAGGTGCATCTAGAACA
GCAGCAGACACAGGAGCAAAAGCCGTTCAAGAATAGCTCGCTGTCCAACG
GAGAAGTGACCATTGAGCCCATTTACAAGCCTGCGGCTATCAGACGCGCA
TTACCCAGCGATTTTCTGACCAATCCCTTCAAGCGCAAGGCAACCCAAGC
GCCGCTTCAGACCCAAGTGACGTCGTCCTTCAACGATCCCATCGAGCTCT
ACTGCCTATCGCTGGTGGACACACTGCGCAGCATGCGGAGATCGGAACGG
GAGCGGGTCAAGTTCGAGTTCGCCAACATTCTGAAGGACGCCAAGTACAA
GGACGAAAGCTAACGAAGCTTTCTAGACCAT

BS01478.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dip3-RA 1047 CG12767-PA 1..1047 17..1063 5235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dip3-RA 1471 CG12767-RA 180..1230 13..1063 5240 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18129179..18130005 237..1063 4135 100 Plus
2R 25286936 2R 18128975..18129101 110..236 635 100 Plus
2R 25286936 2R 18128673..18128770 13..110 475 99 Plus
Blast to na_te.dros performed 2014-11-27 16:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2328..2385 731..787 116 69 Plus
roo 9092 roo DM_ROO 9092bp 1064..1121 731..787 116 69 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6812 731..787 109 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6791 731..787 109 68.4 Plus

BS01478.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:53 Download gff for BS01478.complete
Subject Subject Range Query Range Percent Splice Strand
Dip3-RA 1..1047 17..1063 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:45 Download gff for BS01478.complete
Subject Subject Range Query Range Percent Splice Strand
Dip3-RA 165..1227 2..1069 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:33 Download gff for BS01478.complete
Subject Subject Range Query Range Percent Splice Strand
Dip3-RA 184..1231 17..1065 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:53 Download gff for BS01478.complete
Subject Subject Range Query Range Percent Splice Strand
Dip3-RA 165..1227 2..1069 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:24 Download gff for BS01478.complete
Subject Subject Range Query Range Percent Splice Strand
Dip3-RA 184..1231 17..1065 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:24 Download gff for BS01478.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18128677..18128770 17..110 100 -> Plus
2R 18128976..18129101 111..236 100 -> Plus
2R 18129179..18130006 237..1065 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:33 Download gff for BS01478.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14016182..14016275 17..110 100 -> Plus
arm_2R 14016481..14016606 111..236 100 -> Plus
arm_2R 14016684..14017511 237..1065 99   Plus

BS01478.pep Sequence

Translation from 16 to 1062

> BS01478.pep
MSRKNGNQDTFPKTEKMQRYYAERETTGPEFDDRLIKLVRANPAIYDVSH
PHYRRNPVRVDIWDRIANELGASSRFLQTKWKNIRYNYLQEVKAIETGQA
NPNVRKRRFTEDLSFLQNTAQTYNVKKSQSYVAQQNGMGSDNDSNSFLYP
DPEHLKIDASEGYDIIELDNSDDGSNSDDNEIVPELQLVMGESKQQLSLP
TTLNGTSSSNHSHEHDQASSPASSPLLTPMVVMGNGYGQEVHLEQQQTQE
QKPFKNSSLSNGEVTIEPIYKPAAIRRALPSDFLTNPFKRKATQAPLQTQ
VTSSFNDPIELYCLSLVDTLRSMRRSERERVKFEFANILKDAKYKDES*

BS01478.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dip3-PA 348 CG12767-PA 1..348 1..348 1807 100 Plus