Clone Sequence Records
BS01478.3prime Sequence
778 bp (777 high quality bases) assembled on 2005-11-29
> BS01478.3prime
ATGGTCTAGAAAGCTTCGTTAGCTTTCGTCCTTGTACTTGGCGTCCTTCA
GAATGTTGGCGAACTCGAACTTGACCCGCTCCCGTTCCGATCTCCGCATG
CTGCGCAGTGTGTCCACCAGCGATAGGCAGTAGAGCTCGATGGGATCGTT
GAAGGACGACGTCACTTGGGTCTGAAGCGGCGCTTGGGTTGCCTTGCGCT
TGAAGGGATTGGTCAGAAAATCGCTGGGTAATGCGCGTCTGATAGCCGCA
GGCTTGTAAATGGGCTCAATGGTCACTTCTCCGTTGGACAGCGAGCTATT
CTTGAACGGCTTTTGCTCCTGTGTCTGCTGCTGTTCTAGATGCACCTCCT
GGCCATAGCCATTGCCCATTACAACCATCGGCGTTAGCAGGGGCGAGGAG
GCCGGCGAGCTGGCTTGGTCATGTTCGTGGCTGTGATTGCTGCTGCTGGT
GCCGTTCAGTGTCGTCGGCAGGGATAATTGCTGCTTGGACTCTCCCATGA
CCAGCTGCAACTCGGGCACAATCTCGTTGTCGTCGCTATTTGAGCCATCG
TCGCTGTTGTCCAGCTCGATGATGTCGTAGCCCTCGGAGGCGTCGATCTT
TAGGTGCTCCGGATCGGGATACAAAAAGCTATTGCTGTCGTTGTCACTTC
CCATTCCATTCTGTTGGGCCACGTAGCTCTGGGATTTCTTCACATTGTAG
GTTTGGGCCGTGTTCTGCAGAAAGGATAGATCCTCAGTGAAGCGCCGCTT
GCGTACGTTCGGATTCGCCTGGCCCGTC
BS01478.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12767-PA | 1047 | Dip3-RA | 288..1047 | 778..19 | 3800 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip3-RA | 1471 | CG12767-RA | 471..1230 | 778..19 | 3800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18129246..18130005 | 778..19 | 3800 | 100 | Minus |
Blast to na_te.dros performed 2015-01-30 16:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2385 | 351..295 | 116 | 69 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1121 | 351..295 | 116 | 69 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6791 | 351..295 | 109 | 68.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6812 | 351..295 | 109 | 68.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6833 | 351..295 | 109 | 68.4 | Minus |
BS01478.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:01 Download gff for
BS01478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-PA | 288..1047 | 19..778 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:15 Download gff for
BS01478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12767-PA | 288..1047 | 19..778 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:29:12 Download gff for
BS01478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-RA | 471..1233 | 13..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:54:27 Download gff for
BS01478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-RA | 471..1233 | 13..778 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:54:27 Download gff for
BS01478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18129246..18130008 | 13..778 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:29:12 Download gff for
BS01478.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14016751..14017513 | 13..778 | 99 | | Minus |
BS01478.5prime Sequence
823 bp (711 high quality bases) assembled on 2005-11-29
> BS01478.5prime
GAAGTTATCAGTCGACATGAGCCGAAAGAACGGAAACCAGGACACCTTTC
CCAAGACGGAGAAGATGCAGCGCTACTACGCGGAGCGCGAGACCACAGGA
CCCGAGTTCGACGATCGCCTGATAAAGCTTGTGCGCGCCAATCCGGCCAT
CTATGATGTCAGCCATCCGCACTATCGCCGTAATCCGGTGCGGGTGGACA
TATGGGATCGCATTGCCAACGAACTGGGCGCCTCCTCCCGATTTCTGCAA
ACCAAATGGAAGAACATACGATACAACTATCTGCAGGAGGTCAAGGCGAT
TGAGACGGGCCAGGCGAATCCGAACGTACGCAAGCGGCGCTTCACTGAGG
ATCTATCCTTTCTGCAGAACACGGCCCAAACCTACAATGTGAAGAAATCC
CAGAGCTACGTGGCCCAACAGAATGGAATGGGAAGTGACAACGACAGCAA
TAGCTTTTTGTATCCCGATCCGGAGCACCTAAAGATCGACGCCTCCGAGG
GCTACGACATCATCGAGCTGGACAACAGCGACGATGGCTCAAATAGCGAC
GACAACGAGATTGTGCCCGAGTTGCAGCTGGTCATGGGAGAGTCCAAGCA
GCAATTATCCCTGCCGACGACACTGAACGGCACCAGCAGCAGCAATCACA
GCCACGAACATGACCAAGCCAGCTCGCCGGCCTCCTCGCCCCTGCTAACG
CCGATGGTTGTAATGGGCAATGGCTATGGCCAGGAGGTGCATCTAGAACA
GCAGCAGACACAGGAGCAAAAGCCGTTCAAGAATAGCTCGCTGTCCAACG
GAGAAGTGACCATTGAGCCCATT
BS01478.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12767-PA | 1047 | Dip3-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip3-RA | 1471 | CG12767-RA | 180..990 | 13..823 | 4040 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18129179..18129765 | 237..823 | 2935 | 100 | Plus |
2R | 25286936 | 2R | 18128975..18129101 | 110..236 | 635 | 100 | Plus |
2R | 25286936 | 2R | 18128673..18128770 | 13..110 | 475 | 99 | Plus |
Blast to na_te.dros performed 2015-02-12 05:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2385 | 731..787 | 116 | 69 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1121 | 731..787 | 116 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6791 | 731..787 | 109 | 68.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6812 | 731..787 | 109 | 68.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6833 | 731..787 | 109 | 68.4 | Plus |
BS01478.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:02 Download gff for
BS01478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:16 Download gff for
BS01478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12767-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:38:03 Download gff for
BS01478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-RA | 171..990 | 2..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:06:42 Download gff for
BS01478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-RA | 171..990 | 2..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:06:42 Download gff for
BS01478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18128664..18128770 | 2..110 | 95 | -> | Plus |
2R | 18128976..18129101 | 111..236 | 100 | -> | Plus |
2R | 18129179..18129765 | 237..823 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:38:03 Download gff for
BS01478.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14016169..14016275 | 2..110 | 95 | -> | Plus |
arm_2R | 14016481..14016606 | 111..236 | 100 | -> | Plus |
arm_2R | 14016684..14017270 | 237..823 | 100 | | Plus |
BS01478.complete Sequence
1081 bp (1081 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634623
> BS01478.complete
GAAGTTATCAGTCGACATGAGCCGAAAGAACGGAAACCAGGACACCTTTC
CCAAGACGGAGAAGATGCAGCGCTACTACGCGGAGCGCGAGACCACAGGA
CCCGAGTTCGACGATCGCCTGATAAAGCTTGTGCGCGCCAATCCGGCCAT
CTATGATGTCAGCCATCCGCACTATCGCCGTAATCCGGTGCGGGTGGACA
TATGGGATCGCATTGCCAACGAACTGGGCGCCTCCTCCCGATTTCTGCAA
ACCAAATGGAAGAACATACGATACAACTATCTGCAGGAGGTCAAGGCGAT
TGAGACGGGCCAGGCGAATCCGAACGTACGCAAGCGGCGCTTCACTGAGG
ATCTATCCTTTCTGCAGAACACGGCCCAAACCTACAATGTGAAGAAATCC
CAGAGCTACGTGGCCCAACAGAATGGAATGGGAAGTGACAACGACAGCAA
TAGCTTTTTGTATCCCGATCCGGAGCACCTAAAGATCGACGCCTCCGAGG
GCTACGACATCATCGAGCTGGACAACAGCGACGATGGCTCAAATAGCGAC
GACAACGAGATTGTGCCCGAGTTGCAGCTGGTCATGGGAGAGTCCAAGCA
GCAATTATCCCTGCCGACGACACTGAACGGCACCAGCAGCAGCAATCACA
GCCACGAACATGACCAAGCCAGCTCGCCGGCCTCCTCGCCCCTGCTAACG
CCGATGGTTGTAATGGGCAATGGCTATGGCCAGGAGGTGCATCTAGAACA
GCAGCAGACACAGGAGCAAAAGCCGTTCAAGAATAGCTCGCTGTCCAACG
GAGAAGTGACCATTGAGCCCATTTACAAGCCTGCGGCTATCAGACGCGCA
TTACCCAGCGATTTTCTGACCAATCCCTTCAAGCGCAAGGCAACCCAAGC
GCCGCTTCAGACCCAAGTGACGTCGTCCTTCAACGATCCCATCGAGCTCT
ACTGCCTATCGCTGGTGGACACACTGCGCAGCATGCGGAGATCGGAACGG
GAGCGGGTCAAGTTCGAGTTCGCCAACATTCTGAAGGACGCCAAGTACAA
GGACGAAAGCTAACGAAGCTTTCTAGACCAT
BS01478.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip3-RA | 1047 | CG12767-PA | 1..1047 | 17..1063 | 5235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip3-RA | 1471 | CG12767-RA | 180..1230 | 13..1063 | 5240 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:36:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18129179..18130005 | 237..1063 | 4135 | 100 | Plus |
2R | 25286936 | 2R | 18128975..18129101 | 110..236 | 635 | 100 | Plus |
2R | 25286936 | 2R | 18128673..18128770 | 13..110 | 475 | 99 | Plus |
Blast to na_te.dros performed 2014-11-27 16:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2385 | 731..787 | 116 | 69 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1121 | 731..787 | 116 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6812 | 731..787 | 109 | 68.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6791 | 731..787 | 109 | 68.4 | Plus |
BS01478.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:53 Download gff for
BS01478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-RA | 1..1047 | 17..1063 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:45 Download gff for
BS01478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-RA | 165..1227 | 2..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:33 Download gff for
BS01478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-RA | 184..1231 | 17..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:53 Download gff for
BS01478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-RA | 165..1227 | 2..1069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:24 Download gff for
BS01478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip3-RA | 184..1231 | 17..1065 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:24 Download gff for
BS01478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18128677..18128770 | 17..110 | 100 | -> | Plus |
2R | 18128976..18129101 | 111..236 | 100 | -> | Plus |
2R | 18129179..18130006 | 237..1065 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:33 Download gff for
BS01478.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14016182..14016275 | 17..110 | 100 | -> | Plus |
arm_2R | 14016481..14016606 | 111..236 | 100 | -> | Plus |
arm_2R | 14016684..14017511 | 237..1065 | 99 | | Plus |
BS01478.pep Sequence
Translation from 16 to 1062
> BS01478.pep
MSRKNGNQDTFPKTEKMQRYYAERETTGPEFDDRLIKLVRANPAIYDVSH
PHYRRNPVRVDIWDRIANELGASSRFLQTKWKNIRYNYLQEVKAIETGQA
NPNVRKRRFTEDLSFLQNTAQTYNVKKSQSYVAQQNGMGSDNDSNSFLYP
DPEHLKIDASEGYDIIELDNSDDGSNSDDNEIVPELQLVMGESKQQLSLP
TTLNGTSSSNHSHEHDQASSPASSPLLTPMVVMGNGYGQEVHLEQQQTQE
QKPFKNSSLSNGEVTIEPIYKPAAIRRALPSDFLTNPFKRKATQAPLQTQ
VTSSFNDPIELYCLSLVDTLRSMRRSERERVKFEFANILKDAKYKDES*
BS01478.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip3-PA | 348 | CG12767-PA | 1..348 | 1..348 | 1807 | 100 | Plus |