Clone BS01486 Report

Search the DGRC for BS01486

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:14
Well:86
Vector:pDNR-Dual
Associated Gene/Transcriptl(3)neo38-RA
Protein status:BS01486.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01486.3prime Sequence

832 bp (831 high quality bases) assembled on 2005-11-29

> BS01486.3prime
ATGGTCTAGAAAGCTTCGTCAGGAGCCGTGCAGCGCGTTGCTCTGCGCAC
TGTTGCCGCCTCCACCGCCGCCACCGCCTCCGGCGGATCCGTTAACGTTC
TGCGCCGACACCTCCGACTTGACACGCCGGGCGATGTGCGATCGTGTGTG
CTTGCGCAAGTGATCCTTGCGATAGAAACCTTTTCCACACTCAATGCAAA
CATGCTTCTTCTCGCCGGAATGGATGACAATGTGCAGAGTGAGCTGCTCC
TTGCGCTTGAAGGACTTCATGCAGATATTGCACACATGCGGCCTGTCCGG
TATGTGGGAGAGCTTGTGCCTGGTCAGGTGGTCCTTGCGCTTCAGCGCCG
CATTGCAGATGTCGCAGACGAAGCGCCGCTCAACGGCGTGCGAGATGACG
TGCTGCTCGATGAGGCTGCGATCCGGGTAGGCCATTTGGCACTCCGGGCA
GCAGTAGAGCGTCGAGCCATCCAGCGCCTTTGTCTCGCGGATTTCTCCCG
GTTTGGGGCGCGGCTTCTTCTCCTTTGGTGGTTTCTTCTTTTTGGTCTTC
TTGCCGCTGGCCGTGCCTGTGCCGCCGCTGGCGTTTGTTGTGCCCACAGA
TCCGGAGCTCGAGACGGCGCCGGCGCCACCATTGGTCACAGTGCCGTTAG
CATTGCCATTCACTCCGTTGCTAGCTCCGTTCGTCAGCGCCGCTCCGTTG
GCGTCCGTCATGTTGGTCATGTGACCGCCATGGTCCATGCCCACCAGTCC
GTTGTGGTGGCCGCCATTCGCACCGTTGTTGCTGGGCGTTAGGGCCACGC
CCCCCAGCGCCAGGCTGGCCAAATTTGTGCCG

BS01486.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6930-PA 1143 CG6930-RA 330..1143 832..19 4045 99.8 Minus
CG6930-PB 1344 CG6930-RB 531..1344 832..19 4045 99.8 Minus
CG6930-PC 1344 CG6930-RC 531..1344 832..19 4045 99.8 Minus
CG7368-PB 1593 CG7368-RB 1169..1230 269..208 160 90.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo38-RL 2247 CG6930-RL 1205..2018 832..19 4055 99.9 Minus
l(3)neo38-RK 1611 CG6930-RK 569..1382 832..19 4055 99.9 Minus
l(3)neo38-RJ 3691 CG6930-RJ 434..1247 832..19 4055 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11769370..11769925 277..832 2765 99.8 Plus
3R 32079331 3R 11768840..11769002 19..181 815 100 Plus
3R 32079331 3R 11769056..11769154 178..276 495 100 Plus
3L 28110227 3L 11603938..11604196 376..118 470 78.8 Minus
Blast to na_te.dros performed on 2015-02-10 23:22:34 has no hits.

BS01486.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:08 Download gff for BS01486.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6930-PA 330..1143 19..832 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:23 Download gff for BS01486.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6930-PC 531..1344 19..832 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:40:58 Download gff for BS01486.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)neo38-RJ 434..1250 16..832 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:37:43 Download gff for BS01486.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)neo38-RJ 434..1250 16..832 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:37:43 Download gff for BS01486.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11768837..11769000 16..179 99 <- Plus
3R 11769058..11769154 180..276 100 <- Plus
3R 11769370..11769925 277..832 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:40:58 Download gff for BS01486.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7594559..7594722 16..179 99 <- Plus
arm_3R 7594780..7594876 180..276 100 <- Plus
arm_3R 7595092..7595647 277..832 99   Plus

BS01486.5prime Sequence

856 bp (738 high quality bases) assembled on 2005-11-29

> BS01486.5prime
GAAGTTATCAGTCGACATGTTTTCGGCTGCCAACAACATGCAATATGGCC
AGAATATCTCCATACCGTACTCACAGCCGCAGGGTGATCTAAACTTTCTC
AATGCAGCCGCTGCGGCCGATCATAAGGGTAAAATCCATCCAAAAATCGA
ACGTGACCGGGAAGAAGTCCTCAACCAGCAGATCCTGCAGAATGTCAACC
AATCCTGGCAGACGTTGGCAAATACGGCCAACACGGTGGACTACTCGTCA
CACCTGCTCTCCGCCACACTGCCCATCTCCATACAGCACTTCCTCAAGTA
CTCGGAGACGATCAAGAAGGAGTCCACCGGCGATGTCCTGAAGAACGGCA
CAAATTTGGCCAGCCTGGCGCTGGGGGGCGTGGCCCTAACGCCCAGCAAC
AACGGTGCGAATGGCGGCCACCACAACGGACTGGTGGGCATGGACCATGG
CGGTCACATGACCAACATGACGGACGCCAACGGAGCGGCGCTGACGAACG
GAGCTAGCAACGGAGTGAATGGCAATGCTAACGGCACTGTGACCAATGGT
GGCGCCGGCGCCGTCTCGAGCTCCGGATCTGTGGGCACAACAAACGCCAG
CGGCGGCACAGGCACGGCCAGCGGCAAGAAGACCAAAAAGAAGAAACCAC
CAAAGGAGAAGAAGCCGCGCCCCAAACCGGGAGAAATCCGCGAGACAAAG
GCGCTGGATGGCTCGACGCTCTACTGCTGCCCGGAGTGCCAAATGGCCTA
CCCGGATCGCAGCCTCATCGAGCAGCACGTCATCTCGCACGCCGTTGAGC
GGCGCTTCGTCTGCGACATCTGCAATGCGGCGCTGAAGCGCAAAGACCCA
CTGACC

BS01486.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6930-PA 1143 CG6930-RA 1..827 17..843 4110 99.8 Plus
CG6930-PB 1344 CG6930-RB 206..1028 21..843 4090 99.8 Plus
CG6930-PC 1344 CG6930-RC 206..1028 21..843 4090 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo38-RA 1522 CG6930-RA 151..990 17..856 4140 99.5 Plus
l(3)neo38-RL 2247 CG6930-RL 880..1715 21..856 4120 99.5 Plus
l(3)neo38-RK 1611 CG6930-RK 244..1079 21..856 4120 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11769415..11770105 856..166 3395 99.4 Minus
3R 32079331 3R 11771154..11771300 167..21 735 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:08:57 has no hits.

BS01486.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:09 Download gff for BS01486.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6930-PA 1..840 17..856 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:24 Download gff for BS01486.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6930-PA 1..840 17..856 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:16:50 Download gff for BS01486.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)neo38-RA 146..990 8..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:25:50 Download gff for BS01486.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)neo38-RA 146..990 8..856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:25:50 Download gff for BS01486.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11769415..11770103 168..856 99 <- Minus
3R 11771154..11771303 16..167 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:16:50 Download gff for BS01486.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7595137..7595825 168..856 99 <- Minus
arm_3R 7596876..7597025 16..167 98   Minus

BS01486.complete Sequence

1177 bp (1177 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634624

> BS01486.complete
GAAGTTATCAGTCGACATGTTTTCGGCTGCCAACAACATGCAATATGGCC
AGAATATCTCCATACCGTACTCACAGCCGCAGGGTGATCTAAACTTTCTC
AATGCAGCCGCTGCGGCCGATCATAAGGGTAAAATCCATCCAAAAATCGA
ACGTGACCGGGAAGAAGTCCTCAACCAGCAGATCCTGCAGAATGTCAACC
AATCCTGGCAGACGTTGGCAAATACGGCCAACACGGTGGACTACTCGTCA
CACCTGCTCTCCGCCACACTGCCCATCTCCATACAGCACTTCCTCAAGTA
CTCGGAGACGATCAAGAAGGAGTCCACCGGCGATGTCCTGAAGAACGGCA
CAAATTTGGCCAGCCTGGCGCTGGGGGGCGTGGCCCTAACGCCCAGCAAC
AACGGTGCGAATGGCGGCCACCACAACGGACTGGTGGGCATGGACCATGG
CGGTCACATGACCAACATGACGGACGCCAACGGAGCGGCGCTGACGAACG
GAGCTAGCAACGGAGTGAATGGCAATGCTAACGGCACTGTGACCAATGGT
GGCGCCGGCGCCGTCTCGAGCTCCGGATCTGTGGGCACAACAAACGCCAG
CGGCGGCACAGGCACGGCCAGCGGCAAGAAGACCAAAAAGAAGAAACCAC
CAAAGGAGAAGAAGCCGCGCCCCAAACCGGGAGAAATCCGCGAGACAAAG
GCGCTGGATGGCTCGACGCTCTACTGCTGCCCGGAGTGCCAAATGGCCTA
CCCGGATCGCAGCCTCATCGAGCAGCACGTCATCTCGCACGCCGTTGAGC
GGCGCTTCGTCTGCGACATCTGCAATGCGGCGCTGAAGCGCAAGGACCAC
CTGACCAGGCACAAGCTCTCCCACATACCGGACAGGCCGCATGTGTGCAA
TATCTGCATGAAGTCCTTCAAGCGCAAGGAGCAGCTCACTCTGCACATTG
TCATCCATTCCGGCGAGAAGAAGCATGTTTGCATTGAGTGTGGAAAAGGT
TTCTATCGCAAGGATCACTTGCGCAAGCACACACGATCGCACATCGCCCG
GCGTGTCAAGTCGGAGGTGTCGGCGCAGAACGTTAACGGATCCGCCGGAG
GCGGTGGCGGCGGTGGAGGCGGCAACAGTGCGCAGAGCAACGCGCTGCAC
GGCTCCTGACGAAGCTTTCTAGACCAT

BS01486.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo38-RA 1143 CG6930-PA 1..1143 17..1159 5700 99.9 Plus
l(3)neo38-RL 1368 CG6930-PL 206..1344 21..1159 5680 99.9 Plus
l(3)neo38-RK 1344 CG6930-PK 206..1344 21..1159 5680 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo38-RA 1522 CG6930-RA 151..1293 17..1159 5700 99.9 Plus
l(3)neo38-RL 2247 CG6930-RL 880..2018 21..1159 5680 99.9 Plus
l(3)neo38-RK 1611 CG6930-RK 244..1382 21..1159 5680 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11769370..11770105 901..166 3665 99.9 Minus
3R 32079331 3R 11768840..11769002 1159..997 815 100 Minus
3R 32079331 3R 11771154..11771300 167..21 735 100 Minus
3R 32079331 3R 11769056..11769154 1000..902 495 100 Minus
3L 28110227 3L 11603938..11604196 802..1060 470 78.8 Plus
Blast to na_te.dros performed on 2014-11-27 12:52:06 has no hits.

BS01486.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:26 Download gff for BS01486.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo38-RA 1..1143 17..1159 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:49 Download gff for BS01486.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo38-RA 146..1296 8..1162 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:33 Download gff for BS01486.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo38-RA 158..1294 24..1161 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:26 Download gff for BS01486.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo38-RA 146..1296 8..1162 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:22 Download gff for BS01486.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)neo38-RA 158..1294 24..1161 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:22 Download gff for BS01486.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11768838..11769000 999..1161 99 <- Minus
3R 11769058..11769154 902..998 100 <- Minus
3R 11769370..11770103 168..901 99 <- Minus
3R 11771154..11771297 24..167 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:33 Download gff for BS01486.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7594560..7594722 999..1161 99 <- Minus
arm_3R 7594780..7594876 902..998 100 <- Minus
arm_3R 7595092..7595825 168..901 99 <- Minus
arm_3R 7596876..7597019 24..167 100   Minus

BS01486.pep Sequence

Translation from 16 to 1158

> BS01486.pep
MFSAANNMQYGQNISIPYSQPQGDLNFLNAAAAADHKGKIHPKIERDREE
VLNQQILQNVNQSWQTLANTANTVDYSSHLLSATLPISIQHFLKYSETIK
KESTGDVLKNGTNLASLALGGVALTPSNNGANGGHHNGLVGMDHGGHMTN
MTDANGAALTNGASNGVNGNANGTVTNGGAGAVSSSGSVGTTNASGGTGT
ASGKKTKKKKPPKEKKPRPKPGEIRETKALDGSTLYCCPECQMAYPDRSL
IEQHVISHAVERRFVCDICNAALKRKDHLTRHKLSHIPDRPHVCNICMKS
FKRKEQLTLHIVIHSGEKKHVCIECGKGFYRKDHLRKHTRSHIARRVKSE
VSAQNVNGSAGGGGGGGGGNSAQSNALHGS*

BS01486.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)neo38-PA 380 CG6930-PA 1..380 1..380 2013 100 Plus
l(3)neo38-PK 447 CG6930-PK 70..447 3..380 2002 100 Plus
l(3)neo38-PC 447 CG6930-PC 70..447 3..380 2002 100 Plus
l(3)neo38-PB 447 CG6930-PB 70..447 3..380 2002 100 Plus
l(3)neo38-PL 455 CG6930-PL 70..447 3..380 2002 100 Plus