Clone Sequence Records
BS01486.3prime Sequence
832 bp (831 high quality bases) assembled on 2005-11-29
> BS01486.3prime
ATGGTCTAGAAAGCTTCGTCAGGAGCCGTGCAGCGCGTTGCTCTGCGCAC
TGTTGCCGCCTCCACCGCCGCCACCGCCTCCGGCGGATCCGTTAACGTTC
TGCGCCGACACCTCCGACTTGACACGCCGGGCGATGTGCGATCGTGTGTG
CTTGCGCAAGTGATCCTTGCGATAGAAACCTTTTCCACACTCAATGCAAA
CATGCTTCTTCTCGCCGGAATGGATGACAATGTGCAGAGTGAGCTGCTCC
TTGCGCTTGAAGGACTTCATGCAGATATTGCACACATGCGGCCTGTCCGG
TATGTGGGAGAGCTTGTGCCTGGTCAGGTGGTCCTTGCGCTTCAGCGCCG
CATTGCAGATGTCGCAGACGAAGCGCCGCTCAACGGCGTGCGAGATGACG
TGCTGCTCGATGAGGCTGCGATCCGGGTAGGCCATTTGGCACTCCGGGCA
GCAGTAGAGCGTCGAGCCATCCAGCGCCTTTGTCTCGCGGATTTCTCCCG
GTTTGGGGCGCGGCTTCTTCTCCTTTGGTGGTTTCTTCTTTTTGGTCTTC
TTGCCGCTGGCCGTGCCTGTGCCGCCGCTGGCGTTTGTTGTGCCCACAGA
TCCGGAGCTCGAGACGGCGCCGGCGCCACCATTGGTCACAGTGCCGTTAG
CATTGCCATTCACTCCGTTGCTAGCTCCGTTCGTCAGCGCCGCTCCGTTG
GCGTCCGTCATGTTGGTCATGTGACCGCCATGGTCCATGCCCACCAGTCC
GTTGTGGTGGCCGCCATTCGCACCGTTGTTGCTGGGCGTTAGGGCCACGC
CCCCCAGCGCCAGGCTGGCCAAATTTGTGCCG
BS01486.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6930-PA | 1143 | CG6930-RA | 330..1143 | 832..19 | 4045 | 99.8 | Minus |
CG6930-PB | 1344 | CG6930-RB | 531..1344 | 832..19 | 4045 | 99.8 | Minus |
CG6930-PC | 1344 | CG6930-RC | 531..1344 | 832..19 | 4045 | 99.8 | Minus |
CG7368-PB | 1593 | CG7368-RB | 1169..1230 | 269..208 | 160 | 90.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:22:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo38-RL | 2247 | CG6930-RL | 1205..2018 | 832..19 | 4055 | 99.9 | Minus |
l(3)neo38-RK | 1611 | CG6930-RK | 569..1382 | 832..19 | 4055 | 99.9 | Minus |
l(3)neo38-RJ | 3691 | CG6930-RJ | 434..1247 | 832..19 | 4055 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:22:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11769370..11769925 | 277..832 | 2765 | 99.8 | Plus |
3R | 32079331 | 3R | 11768840..11769002 | 19..181 | 815 | 100 | Plus |
3R | 32079331 | 3R | 11769056..11769154 | 178..276 | 495 | 100 | Plus |
3L | 28110227 | 3L | 11603938..11604196 | 376..118 | 470 | 78.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:22:34 has no hits.
BS01486.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:08 Download gff for
BS01486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6930-PA | 330..1143 | 19..832 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:23 Download gff for
BS01486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6930-PC | 531..1344 | 19..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:40:58 Download gff for
BS01486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RJ | 434..1250 | 16..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:37:43 Download gff for
BS01486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RJ | 434..1250 | 16..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:37:43 Download gff for
BS01486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11768837..11769000 | 16..179 | 99 | <- | Plus |
3R | 11769058..11769154 | 180..276 | 100 | <- | Plus |
3R | 11769370..11769925 | 277..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:40:58 Download gff for
BS01486.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7594559..7594722 | 16..179 | 99 | <- | Plus |
arm_3R | 7594780..7594876 | 180..276 | 100 | <- | Plus |
arm_3R | 7595092..7595647 | 277..832 | 99 | | Plus |
BS01486.5prime Sequence
856 bp (738 high quality bases) assembled on 2005-11-29
> BS01486.5prime
GAAGTTATCAGTCGACATGTTTTCGGCTGCCAACAACATGCAATATGGCC
AGAATATCTCCATACCGTACTCACAGCCGCAGGGTGATCTAAACTTTCTC
AATGCAGCCGCTGCGGCCGATCATAAGGGTAAAATCCATCCAAAAATCGA
ACGTGACCGGGAAGAAGTCCTCAACCAGCAGATCCTGCAGAATGTCAACC
AATCCTGGCAGACGTTGGCAAATACGGCCAACACGGTGGACTACTCGTCA
CACCTGCTCTCCGCCACACTGCCCATCTCCATACAGCACTTCCTCAAGTA
CTCGGAGACGATCAAGAAGGAGTCCACCGGCGATGTCCTGAAGAACGGCA
CAAATTTGGCCAGCCTGGCGCTGGGGGGCGTGGCCCTAACGCCCAGCAAC
AACGGTGCGAATGGCGGCCACCACAACGGACTGGTGGGCATGGACCATGG
CGGTCACATGACCAACATGACGGACGCCAACGGAGCGGCGCTGACGAACG
GAGCTAGCAACGGAGTGAATGGCAATGCTAACGGCACTGTGACCAATGGT
GGCGCCGGCGCCGTCTCGAGCTCCGGATCTGTGGGCACAACAAACGCCAG
CGGCGGCACAGGCACGGCCAGCGGCAAGAAGACCAAAAAGAAGAAACCAC
CAAAGGAGAAGAAGCCGCGCCCCAAACCGGGAGAAATCCGCGAGACAAAG
GCGCTGGATGGCTCGACGCTCTACTGCTGCCCGGAGTGCCAAATGGCCTA
CCCGGATCGCAGCCTCATCGAGCAGCACGTCATCTCGCACGCCGTTGAGC
GGCGCTTCGTCTGCGACATCTGCAATGCGGCGCTGAAGCGCAAAGACCCA
CTGACC
BS01486.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6930-PA | 1143 | CG6930-RA | 1..827 | 17..843 | 4110 | 99.8 | Plus |
CG6930-PB | 1344 | CG6930-RB | 206..1028 | 21..843 | 4090 | 99.8 | Plus |
CG6930-PC | 1344 | CG6930-RC | 206..1028 | 21..843 | 4090 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:09:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo38-RA | 1522 | CG6930-RA | 151..990 | 17..856 | 4140 | 99.5 | Plus |
l(3)neo38-RL | 2247 | CG6930-RL | 880..1715 | 21..856 | 4120 | 99.5 | Plus |
l(3)neo38-RK | 1611 | CG6930-RK | 244..1079 | 21..856 | 4120 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:08:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11769415..11770105 | 856..166 | 3395 | 99.4 | Minus |
3R | 32079331 | 3R | 11771154..11771300 | 167..21 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:08:57 has no hits.
BS01486.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:09 Download gff for
BS01486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6930-PA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:24 Download gff for
BS01486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6930-PA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:16:50 Download gff for
BS01486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RA | 146..990 | 8..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:25:50 Download gff for
BS01486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RA | 146..990 | 8..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:25:50 Download gff for
BS01486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11769415..11770103 | 168..856 | 99 | <- | Minus |
3R | 11771154..11771303 | 16..167 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:16:50 Download gff for
BS01486.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7595137..7595825 | 168..856 | 99 | <- | Minus |
arm_3R | 7596876..7597025 | 16..167 | 98 | | Minus |
BS01486.complete Sequence
1177 bp (1177 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634624
> BS01486.complete
GAAGTTATCAGTCGACATGTTTTCGGCTGCCAACAACATGCAATATGGCC
AGAATATCTCCATACCGTACTCACAGCCGCAGGGTGATCTAAACTTTCTC
AATGCAGCCGCTGCGGCCGATCATAAGGGTAAAATCCATCCAAAAATCGA
ACGTGACCGGGAAGAAGTCCTCAACCAGCAGATCCTGCAGAATGTCAACC
AATCCTGGCAGACGTTGGCAAATACGGCCAACACGGTGGACTACTCGTCA
CACCTGCTCTCCGCCACACTGCCCATCTCCATACAGCACTTCCTCAAGTA
CTCGGAGACGATCAAGAAGGAGTCCACCGGCGATGTCCTGAAGAACGGCA
CAAATTTGGCCAGCCTGGCGCTGGGGGGCGTGGCCCTAACGCCCAGCAAC
AACGGTGCGAATGGCGGCCACCACAACGGACTGGTGGGCATGGACCATGG
CGGTCACATGACCAACATGACGGACGCCAACGGAGCGGCGCTGACGAACG
GAGCTAGCAACGGAGTGAATGGCAATGCTAACGGCACTGTGACCAATGGT
GGCGCCGGCGCCGTCTCGAGCTCCGGATCTGTGGGCACAACAAACGCCAG
CGGCGGCACAGGCACGGCCAGCGGCAAGAAGACCAAAAAGAAGAAACCAC
CAAAGGAGAAGAAGCCGCGCCCCAAACCGGGAGAAATCCGCGAGACAAAG
GCGCTGGATGGCTCGACGCTCTACTGCTGCCCGGAGTGCCAAATGGCCTA
CCCGGATCGCAGCCTCATCGAGCAGCACGTCATCTCGCACGCCGTTGAGC
GGCGCTTCGTCTGCGACATCTGCAATGCGGCGCTGAAGCGCAAGGACCAC
CTGACCAGGCACAAGCTCTCCCACATACCGGACAGGCCGCATGTGTGCAA
TATCTGCATGAAGTCCTTCAAGCGCAAGGAGCAGCTCACTCTGCACATTG
TCATCCATTCCGGCGAGAAGAAGCATGTTTGCATTGAGTGTGGAAAAGGT
TTCTATCGCAAGGATCACTTGCGCAAGCACACACGATCGCACATCGCCCG
GCGTGTCAAGTCGGAGGTGTCGGCGCAGAACGTTAACGGATCCGCCGGAG
GCGGTGGCGGCGGTGGAGGCGGCAACAGTGCGCAGAGCAACGCGCTGCAC
GGCTCCTGACGAAGCTTTCTAGACCAT
BS01486.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo38-RA | 1143 | CG6930-PA | 1..1143 | 17..1159 | 5700 | 99.9 | Plus |
l(3)neo38-RL | 1368 | CG6930-PL | 206..1344 | 21..1159 | 5680 | 99.9 | Plus |
l(3)neo38-RK | 1344 | CG6930-PK | 206..1344 | 21..1159 | 5680 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:52:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo38-RA | 1522 | CG6930-RA | 151..1293 | 17..1159 | 5700 | 99.9 | Plus |
l(3)neo38-RL | 2247 | CG6930-RL | 880..2018 | 21..1159 | 5680 | 99.9 | Plus |
l(3)neo38-RK | 1611 | CG6930-RK | 244..1382 | 21..1159 | 5680 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11769370..11770105 | 901..166 | 3665 | 99.9 | Minus |
3R | 32079331 | 3R | 11768840..11769002 | 1159..997 | 815 | 100 | Minus |
3R | 32079331 | 3R | 11771154..11771300 | 167..21 | 735 | 100 | Minus |
3R | 32079331 | 3R | 11769056..11769154 | 1000..902 | 495 | 100 | Minus |
3L | 28110227 | 3L | 11603938..11604196 | 802..1060 | 470 | 78.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:52:06 has no hits.
BS01486.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:26 Download gff for
BS01486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RA | 1..1143 | 17..1159 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:49 Download gff for
BS01486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RA | 146..1296 | 8..1162 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:33 Download gff for
BS01486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RA | 158..1294 | 24..1161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:26 Download gff for
BS01486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RA | 146..1296 | 8..1162 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:22 Download gff for
BS01486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RA | 158..1294 | 24..1161 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:22 Download gff for
BS01486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11768838..11769000 | 999..1161 | 99 | <- | Minus |
3R | 11769058..11769154 | 902..998 | 100 | <- | Minus |
3R | 11769370..11770103 | 168..901 | 99 | <- | Minus |
3R | 11771154..11771297 | 24..167 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:33 Download gff for
BS01486.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7594560..7594722 | 999..1161 | 99 | <- | Minus |
arm_3R | 7594780..7594876 | 902..998 | 100 | <- | Minus |
arm_3R | 7595092..7595825 | 168..901 | 99 | <- | Minus |
arm_3R | 7596876..7597019 | 24..167 | 100 | | Minus |
BS01486.pep Sequence
Translation from 16 to 1158
> BS01486.pep
MFSAANNMQYGQNISIPYSQPQGDLNFLNAAAAADHKGKIHPKIERDREE
VLNQQILQNVNQSWQTLANTANTVDYSSHLLSATLPISIQHFLKYSETIK
KESTGDVLKNGTNLASLALGGVALTPSNNGANGGHHNGLVGMDHGGHMTN
MTDANGAALTNGASNGVNGNANGTVTNGGAGAVSSSGSVGTTNASGGTGT
ASGKKTKKKKPPKEKKPRPKPGEIRETKALDGSTLYCCPECQMAYPDRSL
IEQHVISHAVERRFVCDICNAALKRKDHLTRHKLSHIPDRPHVCNICMKS
FKRKEQLTLHIVIHSGEKKHVCIECGKGFYRKDHLRKHTRSHIARRVKSE
VSAQNVNGSAGGGGGGGGGNSAQSNALHGS*
BS01486.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo38-PA | 380 | CG6930-PA | 1..380 | 1..380 | 2013 | 100 | Plus |
l(3)neo38-PK | 447 | CG6930-PK | 70..447 | 3..380 | 2002 | 100 | Plus |
l(3)neo38-PC | 447 | CG6930-PC | 70..447 | 3..380 | 2002 | 100 | Plus |
l(3)neo38-PB | 447 | CG6930-PB | 70..447 | 3..380 | 2002 | 100 | Plus |
l(3)neo38-PL | 455 | CG6930-PL | 70..447 | 3..380 | 2002 | 100 | Plus |