Clone Sequence Records
BS01501.3prime Sequence
819 bp (736 high quality bases) assembled on 2005-11-29
> BS01501.3prime
ATGGTCTAGAAAGCTTCGTTATCTGGGCCTTCCACGACCACGTGGAAAGC
CGCGTCCTCTTCCTCTTAAAACTTTGCTATTCGGCGGCGGACTCTTGGGC
CTCAGTAGTTCAATCCTACTAGTGCAACCGGTGGCTGGAGCCTCAGCAAA
GTAGGTCTGGTATAGCTCGGAGTTGAAGTTCGAGTTCGTCAGTTCCGGAC
CAACAGTTAGCCAACCTGGTCGAATACTCGAATCTCTGCCGAACAGATGC
AAACGCCGTCGACCCAAGCAGAAATGTTCGATGATGTGAAAGATCTCGAT
GGGCTTCTCGAAGCTGCCAAACTCCTCTTCCTCTGAGATGATTAAATCAA
TGTCCACGTTGGCATGGATAAAATCGCCATCAGTGGAGCGGCGAACAGTT
CCTTTGATTCCCATCAGGCAGTGTTCCTTGGTGCGTTGAAAGACCGCTTT
CGGTTCAAGTTGCTTGGAGTGCCCGGGCTTGTTAATGTTGGTCCGTATCC
AACATATGTCTTCGCACCTCCGGAATCCCCACTTCTTCAGGCAGTTGCGG
CCCATGTCCAAGCCCTCCGAGGATCCGCACCAAAGGAATACAAACGAACG
ATGAGCAGCTATCTCGCCCACATCCAAATTAAGTATATCATCCCAGTTCC
AGAAAACCCGCGGTGCCCCACCTACAGTGGCTACAGAAGGTGCTGCCCTG
GCATATTCCTCTAGCGGCGGCTCAATCAAAATAACATCAAACTTGGCGCC
CAGCGTCTTGACATCTAGCGATTTCAGATCCGCCTTTAAGTACATAGGTG
CGGATGCGGTGTCTTGGAT
BS01501.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7818-PA | 1194 | CG7818-RA | 394..1194 | 819..19 | 4005 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7818-RA | 1407 | CG7818-RA | 511..1312 | 819..18 | 4010 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8309255..8309866 | 629..18 | 3060 | 100 | Minus |
2L | 23513712 | 2L | 8309009..8309198 | 819..630 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:33:55 has no hits.
BS01501.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:22 Download gff for
BS01501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7818-PA | 394..1194 | 19..819 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:41 Download gff for
BS01501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7818-PA | 394..1194 | 19..819 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:15:37 Download gff for
BS01501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7818-RA | 511..1322 | 7..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:46 Download gff for
BS01501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7818-RA | 511..1322 | 7..819 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:46 Download gff for
BS01501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8309009..8309198 | 630..819 | 100 | -> | Minus |
2L | 8309255..8309876 | 7..629 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:15:37 Download gff for
BS01501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8309009..8309198 | 630..819 | 100 | -> | Minus |
arm_2L | 8309255..8309876 | 7..629 | 99 | | Minus |
BS01501.5prime Sequence
822 bp (788 high quality bases) assembled on 2005-11-29
> BS01501.5prime
GAAGTTATCAGTCGACATGAGCGATGTGCTAAAGAGCTCCCAGGAGCGAT
CCCGCAAGCGTCGTTTGCTTTTAGCGCAAACTTTGGGCTTGTCGAGCGTC
GACGATCTGAAAAAGGCTTTGGGTAATGCCGAAGACATTAACAGTAGTCG
CCAGCTGAATTCCGGTGGGCAACGCGAGGAGGAGGATGGTGGCGCCTCTT
CCTCCAAGAAAACCCCCAATGAAATCATCTATAGGGACTCCTCGACCTTC
CTGAAGGGAACCCAGTCTTCCAATCCGCACAATGACTACTGCCAGCACTT
TGTGGACACCGGTCAGCGTCCCCAGAACTTCATCCGTGATGTCGGCCTAG
CTGACCGCTTCGAGGAGTATCCCAAGTTGAGGGAACTGATCAAACTGAAG
GACAAACTCATCCAAGACACCGCATCCGCACCTATGTACTTAAAGGCGGA
TCTGAAATCGCTAGATGTCAAGACGCTGGGCGCCAAGTTTGATGTTATTT
TGATTGAGCCGCCGCTAGAGGAATATGCCAGGGCAGCACCTTCTGTAGCC
ACTGTAGGTGGGGCACCGCGGGTTTTCTGGAACTGGGATGATATACTTAA
TTTGGATGTGGGCGAGATAGCTGCTCATCGTTCGTTTGTATTCCTTTGGT
GCGGATCCTCGGAGGGCTTGGACATGGGCCGCAACTGCCTGAAGAAGTGG
GGATTCCGGAGGTGCGAAGACATATGTTGGATACGGACCAACATTAACAA
GCCCGGGCACTCCAAGCAACTTGAACCGAAAGCGGTCTTTTCACGCACCC
AGGAACACTGCCTGATGGGAAT
BS01501.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7818-PA | 1194 | CG7818-RA | 1..806 | 17..822 | 3955 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7818-RA | 1407 | CG7818-RA | 118..923 | 17..822 | 3985 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8308682..8309198 | 83..599 | 2585 | 100 | Plus |
2L | 23513712 | 2L | 8309255..8309477 | 600..822 | 1070 | 98.7 | Plus |
2L | 23513712 | 2L | 8308544..8308609 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:41:20 has no hits.
BS01501.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:23 Download gff for
BS01501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7818-PA | 1..806 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:42 Download gff for
BS01501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7818-PA | 1..806 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:51:42 Download gff for
BS01501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7818-RA | 118..923 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:39 Download gff for
BS01501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7818-RA | 118..923 | 17..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:39 Download gff for
BS01501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8308544..8308609 | 17..82 | 100 | -> | Plus |
2L | 8308682..8309198 | 83..599 | 100 | -> | Plus |
2L | 8309255..8309477 | 600..822 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:51:42 Download gff for
BS01501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8308544..8308609 | 17..82 | 100 | -> | Plus |
arm_2L | 8308682..8309198 | 83..599 | 100 | -> | Plus |
arm_2L | 8309255..8309477 | 600..822 | 98 | | Plus |
BS01501.complete Sequence
1228 bp (1228 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634626
> BS01501.complete
GAAGTTATCAGTCGACATGAGCGATGTGCTAAAGAGCTCCCAGGAGCGAT
CCCGCAAGCGTCGTTTGCTTTTAGCGCAAACTTTGGGCTTGTCGAGCGTC
GACGATCTGAAAAAGGCTTTGGGTAATGCCGAAGACATTAACAGTAGTCG
CCAGCTGAATTCCGGTGGGCAACGCGAGGAGGAGGATGGTGGCGCCTCTT
CCTCCAAGAAAACCCCCAATGAAATCATCTATAGGGACTCCTCGACCTTC
CTGAAGGGAACCCAGTCTTCCAATCCGCACAATGACTACTGCCAGCACTT
TGTGGACACCGGTCAGCGTCCCCAGAACTTCATCCGTGATGTCGGCCTAG
CTGACCGCTTCGAGGAGTATCCCAAGTTGAGGGAACTGATCAAACTGAAG
GACAAACTCATCCAAGACACCGCATCCGCACCTATGTACTTAAAGGCGGA
TCTGAAATCGCTAGATGTCAAGACGCTGGGCGCCAAGTTTGATGTTATTT
TGATTGAGCCGCCGCTAGAGGAATATGCCAGGGCAGCACCTTCTGTAGCC
ACTGTAGGTGGGGCACCGCGGGTTTTCTGGAACTGGGATGATATACTTAA
TTTGGATGTGGGCGAGATAGCTGCTCATCGTTCGTTTGTATTCCTTTGGT
GCGGATCCTCGGAGGGCTTGGACATGGGCCGCAACTGCCTGAAGAAGTGG
GGATTCCGGAGGTGCGAAGACATATGTTGGATACGGACCAACATTAACAA
GCCCGGGCACTCCAAGCAACTTGAACCGAAAGCGGTCTTTCAACGCACCA
AGGAACACTGCCTGATGGGAATCAAAGGAACTGTTCGCCGCTCCACTGAT
GGCGATTTTATCCATGCCAACGTGGACATTGATTTAATCATCTCAGAGGA
AGAGGAGTTTGGCAGCTTCGAGAAGCCCATCGAGATCTTTCACATCATCG
AACATTTCTGCTTGGGTCGACGGCGTTTGCATCTGTTCGGCAGAGATTCG
AGTATTCGACCAGGTTGGCTAACTGTTGGTCCGGAACTGACGAACTCGAA
CTTCAACTCCGAGCTATACCAGACCTACTTTGCTGAGGCTCCAGCCACCG
GTTGCACTAGTAGGATTGAACTACTGAGGCCCAAGAGTCCGCCGCCGAAT
AGCAAAGTTTTAAGAGGAAGAGGACGCGGCTTTCCACGTGGTCGTGGAAG
GCCCAGATAACGAAGCTTTCTAGACCAT
BS01501.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:54:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7818-RA | 1194 | CG7818-PA | 1..1194 | 17..1210 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:54:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7818-RA | 1407 | CG7818-RA | 118..1312 | 17..1211 | 5975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8309255..8309866 | 600..1211 | 3060 | 100 | Plus |
2L | 23513712 | 2L | 8308682..8309198 | 83..599 | 2585 | 100 | Plus |
2L | 23513712 | 2L | 8308544..8308609 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:54:24 has no hits.
BS01501.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:54 Download gff for
BS01501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7818-RA | 1..1194 | 17..1210 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:47 Download gff for
BS01501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7818-RA | 105..1309 | 17..1222 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:30 Download gff for
BS01501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7818-RA | 118..1312 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:54 Download gff for
BS01501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7818-RA | 105..1309 | 17..1222 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:30 Download gff for
BS01501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7818-RA | 118..1312 | 17..1212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:30 Download gff for
BS01501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8308544..8308609 | 17..82 | 100 | -> | Plus |
2L | 8308682..8309198 | 83..599 | 100 | -> | Plus |
2L | 8309255..8309866 | 600..1212 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:30 Download gff for
BS01501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8308544..8308609 | 17..82 | 100 | -> | Plus |
arm_2L | 8308682..8309198 | 83..599 | 100 | -> | Plus |
arm_2L | 8309255..8309866 | 600..1212 | 99 | | Plus |
BS01501.pep Sequence
Translation from 16 to 1209
> BS01501.pep
MSDVLKSSQERSRKRRLLLAQTLGLSSVDDLKKALGNAEDINSSRQLNSG
GQREEEDGGASSSKKTPNEIIYRDSSTFLKGTQSSNPHNDYCQHFVDTGQ
RPQNFIRDVGLADRFEEYPKLRELIKLKDKLIQDTASAPMYLKADLKSLD
VKTLGAKFDVILIEPPLEEYARAAPSVATVGGAPRVFWNWDDILNLDVGE
IAAHRSFVFLWCGSSEGLDMGRNCLKKWGFRRCEDICWIRTNINKPGHSK
QLEPKAVFQRTKEHCLMGIKGTVRRSTDGDFIHANVDIDLIISEEEEFGS
FEKPIEIFHIIEHFCLGRRRLHLFGRDSSIRPGWLTVGPELTNSNFNSEL
YQTYFAEAPATGCTSRIELLRPKSPPPNSKVLRGRGRGFPRGRGRPR*
BS01501.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7818-PA | 397 | CG7818-PA | 1..397 | 1..397 | 2097 | 100 | Plus |
Ime4-PA | 608 | CG5933-PA | 385..594 | 135..365 | 253 | 29.3 | Plus |