Clone BS01508 Report

Search the DGRC for BS01508

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:15
Well:8
Vector:pDNR-Dual
Associated Gene/Transcriptal-RA
Protein status:BS01508.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01508.3prime Sequence

800 bp (681 high quality bases) assembled on 2005-11-29

> BS01508.3prime
ATGGTCTAGAAAGCTTCGCTAGCTGACCACATCGTTTCCATGTCCATTCT
GACGCAACAGTTCCAGTTTCAGTTCGTGCTCTCTCGCCTTCAGACGCAGT
GCGGCAATGGAGGAGGTGCGCCTGTCCTCGGGTGGCGTTGCAGCTCTGGG
AGGTGGCGGCGGAGCCTGATGCGATGGTGGAGGCAGTTGTCGTTGGGGAG
AGTGCGACAAAGTCAGGGCCACCGGGGAAGTCTGGGTGGGCGATAGACTC
GAGGCCTGTTGGGTCAAGGCGATCCCAACCAGATGCTGGGGAGAAAGCTG
AGCAGGCTGGACTCCAACTGGCATTTGAGGAGGCGCCTGAGGTGGCGGGG
GGTGAGCGGTTGGATGTTGTTGATGCTGGGAGGCGTGCCCGGAGGCAGGC
GATGTGGGTGGTGAGGCGAGCATGTGGTTGGGCGAATGCAGATCGGGAGA
TCCCACCAGTAGTGCAGGAGGTTTTCCAAGTGGAGTCCCGCGCGGAACGG
CCGTCATATTGGCCAGCAAGGATTGAAATGAGCTCGAGGGAGAGTACATA
CCAGCCATTCCATGTGGTAACATATGGGGAGGAGCCCTCTGGAATTGGTT
AAAGTAGCCCGACGGAATCATGGGGGCCGCAGAGAGGTGCGGGTAGCGGA
AGGCGGCAAGGTTCGCGGCATGTTGGGCGTCGAAGGGCTTGCGCAGCTGG
AAGCCCAGGTGAGTGAAGGGATTGGGCGGTAGGGCGGCCCCAACTACCGT
CTGCATGGTGGCGGCGCCGCCGGGCAGGTAGGGATTATACGGATGCGACT

BS01508.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3935-PA 1227 al-RA 446..1227 800..19 3910 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
al-RA 1806 CG3935-RA 856..1638 800..18 3915 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 386701..387271 588..18 2855 100 Minus
2L 23513712 2L 386363..386577 800..586 1075 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:52:21 has no hits.

BS01508.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:09:28 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:49 Download gff for BS01508.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3935-PA 446..1227 19..800 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:05:32 Download gff for BS01508.3prime
Subject Subject Range Query Range Percent Splice Strand
al-RA 856..1638 18..800 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:17:54 Download gff for BS01508.3prime
Subject Subject Range Query Range Percent Splice Strand
al-RA 856..1638 18..800 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:17:54 Download gff for BS01508.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 386363..386576 587..800 100 -> Minus
2L 386703..387271 18..586 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:05:32 Download gff for BS01508.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 386363..386576 587..800 100 -> Minus
arm_2L 386703..387271 18..586 100   Minus

BS01508.5prime Sequence

782 bp (778 high quality bases) assembled on 2005-11-29

> BS01508.5prime
GAAGTTATCAGTCGACATGGGCATATCGGAGGAAATCAAGCTGGAGGAAC
TACCGCAAGAAGCCAAGCTAGCGCACCCGGATGCCGTAGTGCTGGTGGAT
CGTGCCCCAGGATCGTCGGCCGCCTCCGCCGGCGCAGCGCTGACGGTTTC
GATGTCGGTCTCGGGCGGAGCGCCCAGTGGAGCAAGTGGGGCCAGTGGCG
GCACCAATAGCCCCGTTTCGGATGGAAACAGCGACTGCGAAGCGGACGAG
TACGCCCCGAAGCGGAAGCAGCGGCGCTATCGCACAACCTTCACCAGCTT
TCAGCTCGAGGAGCTGGAGAAGGCATTCTCGCGGACCCATTATCCCGACG
TGTTTACGAGAGAGGAGCTGGCGATGAAAATTGGATTAACCGAGGCGCGC
ATTCAGGTTTGGTTTCAAAATCGGCGCGCCAAGTGGCGCAAGCAGGAGAA
GGTTGGCCCCCAGTCGCATCCGTATAATCCCTACCTGCCCGGCGGCGCCG
CCACCATGCAGACGGTAGTTGGGGCCGCCCTACCGCCCAATCCCTTCACT
CACCTGGGCTTCCAGCTGCGCAAGCCCTTCGACGCCCAACATGCCGCGAA
CCTTGCCGCCTTCCGCTACCCGCACCTCTCTGCGGCCCCCATGATTCCGT
CGGGCTACTTTAACCAATTCCAGAGGGCTCCTCCCCATATGTTACCACAT
GGAATGGCTGGTATGTACTCTCCCTCGAGCTCATTTCAATCCTTGCTGGC
CAATATGACGGCCGTTCCGCGCGGGACTCCAC

BS01508.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3935-PA 1227 al-RA 1..766 17..782 3830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
al-RA 1806 CG3935-RA 411..1176 17..782 3830 100 Plus
Pph13-RA 1880 CG2819-RA 575..717 309..451 265 79 Plus
CG34340-RF 2989 CG34340-RF 736..916 262..442 260 76.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 384551..384894 17..360 1720 100 Plus
2L 23513712 2L 386305..386577 404..676 1365 100 Plus
2L 23513712 2L 386701..386809 674..782 545 100 Plus
2L 23513712 2L 578181..578323 309..451 265 79 Plus
2L 23513712 2L 385699..385748 359..408 250 100 Plus
Blast to na_te.dros performed on 2015-02-02 12:04:42 has no hits.

BS01508.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:09:29 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:50 Download gff for BS01508.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3935-PA 1..766 17..782 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:56:06 Download gff for BS01508.5prime
Subject Subject Range Query Range Percent Splice Strand
al-RA 411..1176 17..782 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:37:58 Download gff for BS01508.5prime
Subject Subject Range Query Range Percent Splice Strand
al-RA 411..1176 17..782 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:37:58 Download gff for BS01508.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 384551..384894 17..360 100 -> Plus
2L 385701..385746 361..406 100 -> Plus
2L 386308..386576 407..675 100 -> Plus
2L 386703..386809 676..782 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:56:06 Download gff for BS01508.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 384551..384894 17..360 100 -> Plus
arm_2L 385701..385746 361..406 100 -> Plus
arm_2L 386308..386576 407..675 100 -> Plus
arm_2L 386703..386809 676..782 100   Plus

BS01508.complete Sequence

1261 bp (1261 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634627

> BS01508.complete
GAAGTTATCAGTCGACATGGGCATATCGGAGGAAATCAAGCTGGAGGAAC
TACCGCAAGAAGCCAAGCTAGCGCACCCGGATGCCGTAGTGCTGGTGGAT
CGTGCCCCAGGATCGTCGGCCGCCTCCGCCGGCGCAGCGCTGACGGTTTC
GATGTCGGTCTCGGGCGGAGCGCCCAGTGGAGCAAGTGGGGCCAGTGGCG
GCACCAATAGCCCCGTTTCGGATGGAAACAGCGACTGCGAAGCGGACGAG
TACGCCCCGAAGCGGAAGCAGCGGCGCTATCGCACAACCTTCACCAGCTT
TCAGCTCGAGGAGCTGGAGAAGGCATTCTCGCGGACCCATTATCCCGACG
TGTTTACGAGAGAGGAGCTGGCGATGAAAATTGGATTAACCGAGGCGCGC
ATTCAGGTTTGGTTTCAAAATCGGCGCGCCAAGTGGCGCAAGCAGGAGAA
GGTTGGCCCCCAGTCGCATCCGTATAATCCCTACCTGCCCGGCGGCGCCG
CCACCATGCAGACGGTAGTTGGGGCCGCCCTACCGCCCAATCCCTTCACT
CACCTGGGCTTCCAGCTGCGCAAGCCCTTCGACGCCCAACATGCCGCGAA
CCTTGCCGCCTTCCGCTACCCGCACCTCTCTGCGGCCCCCATGATTCCGT
CGGGCTACTTTAACCAATTCCAGAGGGCTCCTCCCCATATGTTACCACAT
GGAATGGCTGGTATGTACTCTCCCTCGAGCTCATTTCAATCCTTGCTGGC
CAATATGACGGCCGTTCCGCGCGGGACTCCACTTGGAAAACCTCCTGCAC
TACTGGTGGGATCTCCCGATCTGCATTCGCCCAACCACATGCTCGCCTCA
CCACCCACATCGCCTGCCTCCGGGCACGCCTCCCAGCATCAACAACATCC
AACCGCTCACCCCCCGCCACCTCAGGCGCCTCCTCAAATGCCAGTTGGAG
TCCAGCCTGCTCAGCTTTCTCCCCAGCATCTGGTTGGGATCGCCTTGACC
CAACAGGCCTCGAGTCTATCGCCCACCCAGACTTCCCCGGTGGCCCTGAC
TTTGTCGCACTCTCCCCAACGACAACTGCCTCCACCATCGCATCAGGCTC
CGCCGCCACCTCCCAGAGCTGCAACGCCACCCGAGGACAGGCGCACCTCC
TCCATTGCCGCACTGCGTCTGAAGGCGAGAGAGCACGAACTGAAACTGGA
ACTGTTGCGTCAGAATGGACATGGAAACGATGTGGTCAGCTAGCGAAGCT
TTCTAGACCAT

BS01508.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
al-RA 1227 CG3935-PA 1..1227 17..1243 6135 100 Plus
Pph13-RA 1074 CG2819-PA 68..210 309..451 265 79 Plus
CG34340-RF 1764 CG34340-PF 147..327 262..442 245 75.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
al-RA 1806 CG3935-RA 411..1638 17..1244 6140 100 Plus
Pph13-RA 1880 CG2819-RA 575..717 309..451 265 79 Plus
CG34340-RF 2989 CG34340-RF 736..916 262..442 245 75.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 386701..387271 674..1244 2855 100 Plus
2L 23513712 2L 384551..384894 17..360 1720 100 Plus
2L 23513712 2L 386305..386577 404..676 1365 100 Plus
2L 23513712 2L 578181..578323 309..451 265 79 Plus
2L 23513712 2L 385699..385748 359..408 250 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:44:50 has no hits.

BS01508.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:36 Download gff for BS01508.complete
Subject Subject Range Query Range Percent Splice Strand
al-RA 1..1227 17..1243 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:20 Download gff for BS01508.complete
Subject Subject Range Query Range Percent Splice Strand
al-RA 407..1634 17..1244 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:57 Download gff for BS01508.complete
Subject Subject Range Query Range Percent Splice Strand
al-RA 411..1638 17..1245 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:36 Download gff for BS01508.complete
Subject Subject Range Query Range Percent Splice Strand
al-RA 407..1634 17..1244 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:37 Download gff for BS01508.complete
Subject Subject Range Query Range Percent Splice Strand
al-RA 411..1638 17..1245 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:37 Download gff for BS01508.complete
Subject Subject Range Query Range Percent Splice Strand
2L 384551..384894 17..360 100 -> Plus
2L 385701..385746 361..406 100 -> Plus
2L 386308..386576 407..675 100 -> Plus
2L 386703..387271 676..1245 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:57 Download gff for BS01508.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 384551..384894 17..360 100 -> Plus
arm_2L 385701..385746 361..406 100 -> Plus
arm_2L 386308..386576 407..675 100 -> Plus
arm_2L 386703..387271 676..1245 99   Plus

BS01508.pep Sequence

Translation from 16 to 1242

> BS01508.pep
MGISEEIKLEELPQEAKLAHPDAVVLVDRAPGSSAASAGAALTVSMSVSG
GAPSGASGASGGTNSPVSDGNSDCEADEYAPKRKQRRYRTTFTSFQLEEL
EKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEKVGPQS
HPYNPYLPGGAATMQTVVGAALPPNPFTHLGFQLRKPFDAQHAANLAAFR
YPHLSAAPMIPSGYFNQFQRAPPHMLPHGMAGMYSPSSSFQSLLANMTAV
PRGTPLGKPPALLVGSPDLHSPNHMLASPPTSPASGHASQHQQHPTAHPP
PPQAPPQMPVGVQPAQLSPQHLVGIALTQQASSLSPTQTSPVALTLSHSP
QRQLPPPSHQAPPPPPRAATPPEDRRTSSIAALRLKAREHELKLELLRQN
GHGNDVVS*

BS01508.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
al-PA 408 CG3935-PA 1..408 1..408 2146 100 Plus
Rx-PB 904 CG10052-PB 541..892 67..390 375 33.5 Plus
otp-PK 416 CG10036-PK 69..392 38..335 321 30.3 Plus
otp-PJ 374 CG10036-PJ 69..350 38..335 319 32.3 Plus
hbn-PA 409 CG33152-PA 139..364 71..306 312 35.6 Plus