Clone Sequence Records
BS01512.3prime Sequence
891 bp (795 high quality bases) assembled on 2005-11-29
> BS01512.3prime
ATGGTCTAGAAAGCTTCGTTAAATGGACGAGCTGGTTCCTAATATGTCCG
AGATGCTGAAGCTGCTGCGCTTCGGCTTGGCCATCGTCGGATCGCTGGAT
GACGAAGCAGGGGCAGTAGCAGTGGCTGGCACAGGCGGAGATGGAGGCGG
AGGAGCAGCCGGTGCGGTTCCAACCACATCTACAAAGGTGTCGGCATCGG
CATCTGCCTCTCGGTCGGCAGCAGATTCGCCGCTCGTCGAGCCCGCCGAG
GAGGACGAGACAGAGGAGGCCGGCGATGGCGGTGTGTAAGCCCAACTTGG
ATAAGCACCACCGATGTGCCTGGCATACTCGATGGCCGGCGGCGGTGGCG
CTGGCACATAGAAATTGGCCTCCAGAGCATCCAGCAGATAGTGACGCTGC
ATAGGAACACTGTGATGACTCTGGTGATGATGGTGCTGGGGAAATTCCTC
CACGAGTCGCAACCGTTTGGCTAACGGCGATGTCACCGGGCTTCGATCCA
CCTGGTTTGCCTCGGGCTGCGTTGGCGGTGGCGAGTCATTGATCTTCCGT
TTGCATCTCGACTGACCCGACTCACGGAATCCCTTGGCAAAGGGATTGTT
GTCGATCTTCAGCTTGGTTATGCGGTCATTCTGATAAGCTGTTACGGCTA
TAAACTCCGTCTCCGGAAAGATAAAGGCCTGTTGGGGGGCCCAGGGAATC
TGGCCGAGATCAGAGGTTCGTATGACGTGCAGACGCGGCTGATACTTGTG
CATGCTGGCCAAGACGATATGACCATTGTTATCCAGCGTATTATTCGTCA
ATTTCACTTTGCTGAAGAGCAGAGCCTGGGATTGCCAGTGTTTTCCCGTG
GCTGGACTCTCCGGATGCAGATACATGCGCTGCGGGCTCTG
BS01512.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5093-PA | 1275 | Doc3-RA | 403..1275 | 891..19 | 4365 | 100 | Minus |
CG5187-PB | 1410 | Doc2-RB | 484..578 | 801..707 | 250 | 90.5 | Minus |
CG5187-PA | 1410 | Doc2-RA | 484..578 | 801..707 | 250 | 90.5 | Minus |
CG5187-PB | 1410 | Doc2-RB | 661..710 | 624..575 | 175 | 94 | Minus |
CG5187-PA | 1410 | Doc2-RA | 661..710 | 624..575 | 175 | 94 | Minus |
CG5133-PA | 1176 | Doc1-RA | 403..440 | 891..854 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-RA | 1671 | CG5093-RA | 525..1397 | 891..19 | 4365 | 100 | Minus |
Doc2-RA | 1945 | CG5187-RA | 758..1098 | 882..542 | 805 | 82.7 | Minus |
Doc1-RB | 1339 | CG5133-RB | 381..728 | 891..544 | 675 | 79.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9006361..9006975 | 633..19 | 3075 | 100 | Minus |
3L | 28110227 | 3L | 9006159..9006296 | 768..631 | 690 | 100 | Minus |
3L | 28110227 | 3L | 9005920..9006042 | 891..769 | 615 | 100 | Minus |
3L | 28110227 | 3L | 9014492..9014626 | 631..765 | 405 | 86.7 | Plus |
3L | 28110227 | 3L | 9013533..9013624 | 542..633 | 265 | 85.9 | Plus |
3L | 28110227 | 3L | 9043533..9043642 | 891..782 | 265 | 82.7 | Minus |
3L | 28110227 | 3L | 9043724..9043861 | 768..631 | 225 | 77.5 | Minus |
3L | 28110227 | 3L | 9044342..9044431 | 633..544 | 210 | 82.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:26:49 has no hits.
BS01512.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:30 Download gff for
BS01512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-PA | 403..1275 | 19..891 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:51 Download gff for
BS01512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5093-PA | 403..1275 | 19..891 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:09:33 Download gff for
BS01512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 525..1407 | 6..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:53 Download gff for
BS01512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 525..1407 | 6..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:53 Download gff for
BS01512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9005920..9006042 | 769..891 | 100 | -> | Minus |
3L | 9006159..9006296 | 631..768 | 100 | -> | Minus |
3L | 9006364..9006985 | 6..630 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:09:33 Download gff for
BS01512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8999020..8999142 | 769..891 | 100 | -> | Minus |
arm_3L | 8999259..8999396 | 631..768 | 100 | -> | Minus |
arm_3L | 8999464..9000085 | 6..630 | 99 | | Minus |
BS01512.5prime Sequence
832 bp (829 high quality bases) assembled on 2005-11-29
> BS01512.5prime
GAAGTTATCAGTCGACATGTTGACCTTGCCCAACATCGCCGATCTGCGAT
TGCAGCAGCAGATCGCCCAGGAGATATACCGCCAGCAGATTATGCAACGT
TTACCCGATCCCCTATGCGGCCTGCTACCCAACTTTGCCGGACACTTTAT
GCCACCGCCGCCACCGCCGCAACCCACTTTGCCCGGCGATGTGGAGGCCA
AGCTGGAGAATAACGAACTCTGGCAGCAGTTCCACAGCATCGGCACCGAG
ATGATCATCACCAAGTGCGGCAGACGCATGTTCCCTTCGATGCGGGTTTC
CCTCAGTGGACTGGAGGAGGAGGCCAGCTATTGCGTGCTCCTCGAGATGG
TGCCCATTGGCGATTGTCGCTATAAGTTCTCTGGATCCCAGTGGGTGCCG
GCCGGAGGAGCCGAGCCCCAGAGCCCGCAGCGCATGTATCTGCATCCGGA
GAGTCCAGCCACGGGAAAACACTGGCAATCCCAGGCTCTGCTCTTCAGCA
AAGTGAAATTGACGAATAATACGCTGGATAACAATGGTCATATCGTCTTG
GCCAGCATGCACAAGTATCAGCCGCGTCTGCACGTCATACGAACCTCTGA
TCTCGGCCAGATTCCCTGGGCCCCCCAACAGGCCTTTATCTTTCCGGAGA
CGGAGTTTATAGCCGTAACAGCTTATCAGAATGACCGCATAACCAAGCTG
AAGATCGACAACAATCCCTTTGCCAAGGGATTCCGTGAGTCGGGTCAGTC
GAGATGCAAACGGAAGATCAATGACTCGCCACCCGCCACGCAGCCCGAGG
CAAACCAGGTGGATCGAAGCCCGGTGACATCG
BS01512.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5093-PA | 1275 | Doc3-RA | 1..767 | 17..783 | 3835 | 100 | Plus |
CG5133-PA | 1176 | Doc1-RA | 223..440 | 239..456 | 740 | 93.5 | Plus |
CG5187-PB | 1410 | Doc2-RB | 303..437 | 328..462 | 275 | 88.1 | Plus |
CG5187-PA | 1410 | Doc2-RA | 303..437 | 328..462 | 275 | 88.1 | Plus |
CG5187-PB | 1410 | Doc2-RB | 484..578 | 509..603 | 250 | 90.5 | Plus |
CG5187-PA | 1410 | Doc2-RA | 484..578 | 509..603 | 250 | 90.5 | Plus |
CG5093-PA | 1275 | Doc3-RA | 772..816 | 788..832 | 225 | 100 | Plus |
CG5187-PB | 1410 | Doc2-RB | 661..710 | 686..735 | 175 | 94 | Plus |
CG5187-PA | 1410 | Doc2-RA | 661..710 | 686..735 | 175 | 94 | Plus |
CG5187-PB | 1410 | Doc2-RB | 226..269 | 251..294 | 145 | 93.1 | Plus |
CG5187-PA | 1410 | Doc2-RA | 226..269 | 251..294 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:33:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-RA | 1671 | CG5093-RA | 123..938 | 17..832 | 4035 | 99.8 | Plus |
Doc1-RB | 1339 | CG5133-RB | 138..728 | 173..766 | 1505 | 83.7 | Plus |
Doc1-RA | 1526 | CG5133-RA | 325..915 | 173..766 | 1505 | 83.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:33:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9005772..9006042 | 271..541 | 1355 | 100 | Plus |
3L | 28110227 | 3L | 9043385..9043642 | 271..528 | 870 | 89.1 | Plus |
3L | 28110227 | 3L | 9005470..9005636 | 107..273 | 835 | 100 | Plus |
3L | 28110227 | 3L | 9006361..9006516 | 677..832 | 735 | 98.1 | Plus |
3L | 28110227 | 3L | 9006159..9006296 | 542..679 | 690 | 100 | Plus |
3L | 28110227 | 3L | 9014716..9014937 | 533..312 | 495 | 81.5 | Minus |
3L | 28110227 | 3L | 9005318..9005408 | 17..107 | 455 | 100 | Plus |
3L | 28110227 | 3L | 9014492..9014626 | 679..545 | 405 | 86.7 | Minus |
3L | 28110227 | 3L | 9013533..9013624 | 768..677 | 265 | 85.9 | Minus |
3L | 28110227 | 3L | 9042116..9042196 | 191..271 | 240 | 86.4 | Plus |
3L | 28110227 | 3L | 9043724..9043861 | 542..679 | 225 | 77.5 | Plus |
3L | 28110227 | 3L | 9044342..9044431 | 677..766 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:33:22 has no hits.
BS01512.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:31 Download gff for
BS01512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:52 Download gff for
BS01512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5093-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:28:31 Download gff for
BS01512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 123..938 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:13:43 Download gff for
BS01512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 123..938 | 17..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:13:43 Download gff for
BS01512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9005775..9006042 | 274..541 | 100 | -> | Plus |
3L | 9006159..9006296 | 542..679 | 100 | -> | Plus |
3L | 9006364..9006516 | 680..832 | 98 | | Plus |
3L | 9005318..9005408 | 17..107 | 100 | -> | Plus |
3L | 9005471..9005636 | 108..273 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:28:31 Download gff for
BS01512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8998418..8998508 | 17..107 | 100 | -> | Plus |
arm_3L | 8998571..8998736 | 108..273 | 100 | -> | Plus |
arm_3L | 8998875..8999142 | 274..541 | 100 | -> | Plus |
arm_3L | 8999259..8999396 | 542..679 | 100 | -> | Plus |
arm_3L | 8999464..8999616 | 680..832 | 98 | | Plus |
BS01512.complete Sequence
1309 bp (1309 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634628
> BS01512.complete
GAAGTTATCAGTCGACATGTTGACCTTGCCCAACATCGCCGATCTGCGAT
TGCAGCAGCAGATCGCCCAGGAGATATACCGCCAGCAGATTATGCAACGT
TTACCCGATCCCCTATGCGGCCTGCTACCCAACTTTGCCGGACACTTTAT
GCCACCGCCGCCACCGCCGCAACCCACTTTGCCCGGCGATGTGGAGGCCA
AGCTGGAGAATAACGAACTCTGGCAGCAGTTCCACAGCATCGGCACCGAG
ATGATCATCACCAAGTGCGGCAGACGCATGTTCCCTTCGATGCGGGTTTC
CCTCAGTGGACTGGAGGAGGAGGCCAGCTATTGCGTGCTCCTCGAGATGG
TGCCCATTGGCGATTGTCGCTATAAGTTCTCTGGATCCCAGTGGGTGCCG
GCCGGAGGAGCCGAGCCCCAGAGCCCGCAGCGCATGTATCTGCATCCGGA
GAGTCCAGCCACGGGAAAACACTGGCAATCCCAGGCTCTGCTCTTCAGCA
AAGTGAAATTGACGAATAATACGCTGGATAACAATGGTCATATCGTCTTG
GCCAGCATGCACAAGTATCAGCCGCGTCTGCACGTCATACGAACCTCTGA
TCTCGGCCAGATTCCCTGGGCCCCCCAACAGGCCTTTATCTTTCCGGAGA
CGGAGTTTATAGCCGTAACAGCTTATCAGAATGACCGCATAACCAAGCTG
AAGATCGACAACAATCCCTTTGCCAAGGGATTCCGTGAGTCGGGTCAGTC
GAGATGCAAACGGAAGATCAATGACTCGCCACCGCCAACGCAGCCCGAGG
CAAACCAGGTGGATCGAAGCCCGGTGACATCGCCGTTAGCCAAACGGTTG
CGACTCGTGGAGGAATTTCCCCAGCACCATCATCACCAGAGTCATCACAG
TGTTCCTATGCAGCGTCACTATCTGCTGGATGCTCTGGAGGCCAATTTCT
ATGTGCCAGCGCCACCGCCGCCGGCCATCGAGTATGCCAGGCACATCGGT
GGTGCTTATCCAAGTTGGGCTTACACACCGCCATCGCCGGCCTCCTCTGT
CTCGTCCTCCTCGGCGGGCTCGACGAGCGGCGAATCTGCTGCCGACCGAG
AGGCAGATGCCGATGCCGACACCTTTGTAGATGTGGTTGGAACCGCACCG
GCTGCTCCTCCGCCTCCATCTCCGCCTGTGCCAGCCACTGCTACTGCCCC
TGCTTCGTCATCCAGCGATCCGACGATGGCCAAGCCGAAGCGCAGCAGCT
TCAGCATCTCGGACATATTAGGAACCAGCTCGTCCATTTAACGAAGCTTT
CTAGACCAT
BS01512.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-RA | 1275 | CG5093-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Doc1-RB | 1071 | CG5133-PB | 70..645 | 191..766 | 1500 | 84 | Plus |
Doc1-RA | 1176 | CG5133-PA | 175..750 | 191..766 | 1500 | 84 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-RA | 1671 | CG5093-RA | 123..1397 | 17..1291 | 6375 | 100 | Plus |
Doc1-RB | 1339 | CG5133-RB | 153..728 | 191..766 | 1500 | 84 | Plus |
Doc1-RA | 1526 | CG5133-RA | 340..915 | 191..766 | 1500 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9006361..9006975 | 677..1291 | 3075 | 100 | Plus |
3L | 28110227 | 3L | 9005772..9006042 | 271..541 | 1355 | 100 | Plus |
3L | 28110227 | 3L | 9043385..9043642 | 271..528 | 870 | 89.1 | Plus |
3L | 28110227 | 3L | 9005470..9005636 | 107..273 | 835 | 100 | Plus |
3L | 28110227 | 3L | 9006159..9006296 | 542..679 | 690 | 100 | Plus |
3L | 28110227 | 3L | 9014716..9014937 | 533..312 | 495 | 81.5 | Minus |
3L | 28110227 | 3L | 9005318..9005408 | 17..107 | 455 | 100 | Plus |
3L | 28110227 | 3L | 9014492..9014626 | 679..545 | 405 | 86.7 | Minus |
3L | 28110227 | 3L | 9013533..9013624 | 768..677 | 265 | 85.9 | Minus |
3L | 28110227 | 3L | 9042116..9042196 | 191..271 | 240 | 86.4 | Plus |
3L | 28110227 | 3L | 9043724..9043861 | 542..679 | 225 | 77.5 | Plus |
3L | 28110227 | 3L | 9044342..9044431 | 677..766 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:02:35 has no hits.
BS01512.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:55 Download gff for
BS01512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 1..1275 | 17..1291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:49 Download gff for
BS01512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 121..1405 | 17..1304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:03 Download gff for
BS01512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 128..1397 | 22..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:55 Download gff for
BS01512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 121..1405 | 17..1304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:01 Download gff for
BS01512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 128..1397 | 22..1293 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:01 Download gff for
BS01512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9005323..9005408 | 22..107 | 100 | -> | Plus |
3L | 9005471..9005636 | 108..273 | 100 | -> | Plus |
3L | 9005775..9006042 | 274..541 | 100 | -> | Plus |
3L | 9006159..9006296 | 542..679 | 100 | -> | Plus |
3L | 9006364..9006975 | 680..1293 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:03 Download gff for
BS01512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8998423..8998508 | 22..107 | 100 | -> | Plus |
arm_3L | 8998571..8998736 | 108..273 | 100 | -> | Plus |
arm_3L | 8998875..8999142 | 274..541 | 100 | -> | Plus |
arm_3L | 8999259..8999396 | 542..679 | 100 | -> | Plus |
arm_3L | 8999464..9000075 | 680..1293 | 99 | | Plus |
BS01512.pep Sequence
Translation from 16 to 1290
> BS01512.pep
MLTLPNIADLRLQQQIAQEIYRQQIMQRLPDPLCGLLPNFAGHFMPPPPP
PQPTLPGDVEAKLENNELWQQFHSIGTEMIITKCGRRMFPSMRVSLSGLE
EEASYCVLLEMVPIGDCRYKFSGSQWVPAGGAEPQSPQRMYLHPESPATG
KHWQSQALLFSKVKLTNNTLDNNGHIVLASMHKYQPRLHVIRTSDLGQIP
WAPQQAFIFPETEFIAVTAYQNDRITKLKIDNNPFAKGFRESGQSRCKRK
INDSPPPTQPEANQVDRSPVTSPLAKRLRLVEEFPQHHHHQSHHSVPMQR
HYLLDALEANFYVPAPPPPAIEYARHIGGAYPSWAYTPPSPASSVSSSSA
GSTSGESAADREADADADTFVDVVGTAPAAPPPPSPPVPATATAPASSSS
DPTMAKPKRSSFSISDILGTSSSI*
BS01512.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-PA | 424 | CG5093-PA | 1..424 | 1..424 | 2256 | 100 | Plus |
Doc1-PA | 391 | CG5133-PA | 1..389 | 1..418 | 1161 | 59.4 | Plus |
Doc2-PA | 469 | CG5187-PA | 1..252 | 1..255 | 1065 | 77.2 | Plus |
Doc1-PB | 356 | CG5133-PB | 16..354 | 50..418 | 1046 | 60.6 | Plus |
bi-PE | 970 | CG3578-PE | 319..685 | 50..400 | 609 | 37.6 | Plus |