Clone BS01512 Report

Search the DGRC for BS01512

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:15
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptDoc3-RA
Protein status:BS01512.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01512.3prime Sequence

891 bp (795 high quality bases) assembled on 2005-11-29

> BS01512.3prime
ATGGTCTAGAAAGCTTCGTTAAATGGACGAGCTGGTTCCTAATATGTCCG
AGATGCTGAAGCTGCTGCGCTTCGGCTTGGCCATCGTCGGATCGCTGGAT
GACGAAGCAGGGGCAGTAGCAGTGGCTGGCACAGGCGGAGATGGAGGCGG
AGGAGCAGCCGGTGCGGTTCCAACCACATCTACAAAGGTGTCGGCATCGG
CATCTGCCTCTCGGTCGGCAGCAGATTCGCCGCTCGTCGAGCCCGCCGAG
GAGGACGAGACAGAGGAGGCCGGCGATGGCGGTGTGTAAGCCCAACTTGG
ATAAGCACCACCGATGTGCCTGGCATACTCGATGGCCGGCGGCGGTGGCG
CTGGCACATAGAAATTGGCCTCCAGAGCATCCAGCAGATAGTGACGCTGC
ATAGGAACACTGTGATGACTCTGGTGATGATGGTGCTGGGGAAATTCCTC
CACGAGTCGCAACCGTTTGGCTAACGGCGATGTCACCGGGCTTCGATCCA
CCTGGTTTGCCTCGGGCTGCGTTGGCGGTGGCGAGTCATTGATCTTCCGT
TTGCATCTCGACTGACCCGACTCACGGAATCCCTTGGCAAAGGGATTGTT
GTCGATCTTCAGCTTGGTTATGCGGTCATTCTGATAAGCTGTTACGGCTA
TAAACTCCGTCTCCGGAAAGATAAAGGCCTGTTGGGGGGCCCAGGGAATC
TGGCCGAGATCAGAGGTTCGTATGACGTGCAGACGCGGCTGATACTTGTG
CATGCTGGCCAAGACGATATGACCATTGTTATCCAGCGTATTATTCGTCA
ATTTCACTTTGCTGAAGAGCAGAGCCTGGGATTGCCAGTGTTTTCCCGTG
GCTGGACTCTCCGGATGCAGATACATGCGCTGCGGGCTCTG

BS01512.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5093-PA 1275 Doc3-RA 403..1275 891..19 4365 100 Minus
CG5187-PB 1410 Doc2-RB 484..578 801..707 250 90.5 Minus
CG5187-PA 1410 Doc2-RA 484..578 801..707 250 90.5 Minus
CG5187-PB 1410 Doc2-RB 661..710 624..575 175 94 Minus
CG5187-PA 1410 Doc2-RA 661..710 624..575 175 94 Minus
CG5133-PA 1176 Doc1-RA 403..440 891..854 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-RA 1671 CG5093-RA 525..1397 891..19 4365 100 Minus
Doc2-RA 1945 CG5187-RA 758..1098 882..542 805 82.7 Minus
Doc1-RB 1339 CG5133-RB 381..728 891..544 675 79.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9006361..9006975 633..19 3075 100 Minus
3L 28110227 3L 9006159..9006296 768..631 690 100 Minus
3L 28110227 3L 9005920..9006042 891..769 615 100 Minus
3L 28110227 3L 9014492..9014626 631..765 405 86.7 Plus
3L 28110227 3L 9013533..9013624 542..633 265 85.9 Plus
3L 28110227 3L 9043533..9043642 891..782 265 82.7 Minus
3L 28110227 3L 9043724..9043861 768..631 225 77.5 Minus
3L 28110227 3L 9044342..9044431 633..544 210 82.2 Minus
Blast to na_te.dros performed on 2015-02-10 17:26:49 has no hits.

BS01512.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:30 Download gff for BS01512.3prime
Subject Subject Range Query Range Percent Splice Strand
Doc3-PA 403..1275 19..891 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:51 Download gff for BS01512.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5093-PA 403..1275 19..891 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:09:33 Download gff for BS01512.3prime
Subject Subject Range Query Range Percent Splice Strand
Doc3-RA 525..1407 6..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:53 Download gff for BS01512.3prime
Subject Subject Range Query Range Percent Splice Strand
Doc3-RA 525..1407 6..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:53 Download gff for BS01512.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9005920..9006042 769..891 100 -> Minus
3L 9006159..9006296 631..768 100 -> Minus
3L 9006364..9006985 6..630 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:09:33 Download gff for BS01512.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8999020..8999142 769..891 100 -> Minus
arm_3L 8999259..8999396 631..768 100 -> Minus
arm_3L 8999464..9000085 6..630 99   Minus

BS01512.5prime Sequence

832 bp (829 high quality bases) assembled on 2005-11-29

> BS01512.5prime
GAAGTTATCAGTCGACATGTTGACCTTGCCCAACATCGCCGATCTGCGAT
TGCAGCAGCAGATCGCCCAGGAGATATACCGCCAGCAGATTATGCAACGT
TTACCCGATCCCCTATGCGGCCTGCTACCCAACTTTGCCGGACACTTTAT
GCCACCGCCGCCACCGCCGCAACCCACTTTGCCCGGCGATGTGGAGGCCA
AGCTGGAGAATAACGAACTCTGGCAGCAGTTCCACAGCATCGGCACCGAG
ATGATCATCACCAAGTGCGGCAGACGCATGTTCCCTTCGATGCGGGTTTC
CCTCAGTGGACTGGAGGAGGAGGCCAGCTATTGCGTGCTCCTCGAGATGG
TGCCCATTGGCGATTGTCGCTATAAGTTCTCTGGATCCCAGTGGGTGCCG
GCCGGAGGAGCCGAGCCCCAGAGCCCGCAGCGCATGTATCTGCATCCGGA
GAGTCCAGCCACGGGAAAACACTGGCAATCCCAGGCTCTGCTCTTCAGCA
AAGTGAAATTGACGAATAATACGCTGGATAACAATGGTCATATCGTCTTG
GCCAGCATGCACAAGTATCAGCCGCGTCTGCACGTCATACGAACCTCTGA
TCTCGGCCAGATTCCCTGGGCCCCCCAACAGGCCTTTATCTTTCCGGAGA
CGGAGTTTATAGCCGTAACAGCTTATCAGAATGACCGCATAACCAAGCTG
AAGATCGACAACAATCCCTTTGCCAAGGGATTCCGTGAGTCGGGTCAGTC
GAGATGCAAACGGAAGATCAATGACTCGCCACCCGCCACGCAGCCCGAGG
CAAACCAGGTGGATCGAAGCCCGGTGACATCG

BS01512.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5093-PA 1275 Doc3-RA 1..767 17..783 3835 100 Plus
CG5133-PA 1176 Doc1-RA 223..440 239..456 740 93.5 Plus
CG5187-PB 1410 Doc2-RB 303..437 328..462 275 88.1 Plus
CG5187-PA 1410 Doc2-RA 303..437 328..462 275 88.1 Plus
CG5187-PB 1410 Doc2-RB 484..578 509..603 250 90.5 Plus
CG5187-PA 1410 Doc2-RA 484..578 509..603 250 90.5 Plus
CG5093-PA 1275 Doc3-RA 772..816 788..832 225 100 Plus
CG5187-PB 1410 Doc2-RB 661..710 686..735 175 94 Plus
CG5187-PA 1410 Doc2-RA 661..710 686..735 175 94 Plus
CG5187-PB 1410 Doc2-RB 226..269 251..294 145 93.1 Plus
CG5187-PA 1410 Doc2-RA 226..269 251..294 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-RA 1671 CG5093-RA 123..938 17..832 4035 99.8 Plus
Doc1-RB 1339 CG5133-RB 138..728 173..766 1505 83.7 Plus
Doc1-RA 1526 CG5133-RA 325..915 173..766 1505 83.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9005772..9006042 271..541 1355 100 Plus
3L 28110227 3L 9043385..9043642 271..528 870 89.1 Plus
3L 28110227 3L 9005470..9005636 107..273 835 100 Plus
3L 28110227 3L 9006361..9006516 677..832 735 98.1 Plus
3L 28110227 3L 9006159..9006296 542..679 690 100 Plus
3L 28110227 3L 9014716..9014937 533..312 495 81.5 Minus
3L 28110227 3L 9005318..9005408 17..107 455 100 Plus
3L 28110227 3L 9014492..9014626 679..545 405 86.7 Minus
3L 28110227 3L 9013533..9013624 768..677 265 85.9 Minus
3L 28110227 3L 9042116..9042196 191..271 240 86.4 Plus
3L 28110227 3L 9043724..9043861 542..679 225 77.5 Plus
3L 28110227 3L 9044342..9044431 677..766 210 82.2 Plus
Blast to na_te.dros performed on 2015-02-11 15:33:22 has no hits.

BS01512.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:31 Download gff for BS01512.5prime
Subject Subject Range Query Range Percent Splice Strand
Doc3-PA 1..816 17..832 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:18:52 Download gff for BS01512.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5093-PA 1..816 17..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:28:31 Download gff for BS01512.5prime
Subject Subject Range Query Range Percent Splice Strand
Doc3-RA 123..938 17..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:13:43 Download gff for BS01512.5prime
Subject Subject Range Query Range Percent Splice Strand
Doc3-RA 123..938 17..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:13:43 Download gff for BS01512.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9005775..9006042 274..541 100 -> Plus
3L 9006159..9006296 542..679 100 -> Plus
3L 9006364..9006516 680..832 98   Plus
3L 9005318..9005408 17..107 100 -> Plus
3L 9005471..9005636 108..273 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:28:31 Download gff for BS01512.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8998418..8998508 17..107 100 -> Plus
arm_3L 8998571..8998736 108..273 100 -> Plus
arm_3L 8998875..8999142 274..541 100 -> Plus
arm_3L 8999259..8999396 542..679 100 -> Plus
arm_3L 8999464..8999616 680..832 98   Plus

BS01512.complete Sequence

1309 bp (1309 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634628

> BS01512.complete
GAAGTTATCAGTCGACATGTTGACCTTGCCCAACATCGCCGATCTGCGAT
TGCAGCAGCAGATCGCCCAGGAGATATACCGCCAGCAGATTATGCAACGT
TTACCCGATCCCCTATGCGGCCTGCTACCCAACTTTGCCGGACACTTTAT
GCCACCGCCGCCACCGCCGCAACCCACTTTGCCCGGCGATGTGGAGGCCA
AGCTGGAGAATAACGAACTCTGGCAGCAGTTCCACAGCATCGGCACCGAG
ATGATCATCACCAAGTGCGGCAGACGCATGTTCCCTTCGATGCGGGTTTC
CCTCAGTGGACTGGAGGAGGAGGCCAGCTATTGCGTGCTCCTCGAGATGG
TGCCCATTGGCGATTGTCGCTATAAGTTCTCTGGATCCCAGTGGGTGCCG
GCCGGAGGAGCCGAGCCCCAGAGCCCGCAGCGCATGTATCTGCATCCGGA
GAGTCCAGCCACGGGAAAACACTGGCAATCCCAGGCTCTGCTCTTCAGCA
AAGTGAAATTGACGAATAATACGCTGGATAACAATGGTCATATCGTCTTG
GCCAGCATGCACAAGTATCAGCCGCGTCTGCACGTCATACGAACCTCTGA
TCTCGGCCAGATTCCCTGGGCCCCCCAACAGGCCTTTATCTTTCCGGAGA
CGGAGTTTATAGCCGTAACAGCTTATCAGAATGACCGCATAACCAAGCTG
AAGATCGACAACAATCCCTTTGCCAAGGGATTCCGTGAGTCGGGTCAGTC
GAGATGCAAACGGAAGATCAATGACTCGCCACCGCCAACGCAGCCCGAGG
CAAACCAGGTGGATCGAAGCCCGGTGACATCGCCGTTAGCCAAACGGTTG
CGACTCGTGGAGGAATTTCCCCAGCACCATCATCACCAGAGTCATCACAG
TGTTCCTATGCAGCGTCACTATCTGCTGGATGCTCTGGAGGCCAATTTCT
ATGTGCCAGCGCCACCGCCGCCGGCCATCGAGTATGCCAGGCACATCGGT
GGTGCTTATCCAAGTTGGGCTTACACACCGCCATCGCCGGCCTCCTCTGT
CTCGTCCTCCTCGGCGGGCTCGACGAGCGGCGAATCTGCTGCCGACCGAG
AGGCAGATGCCGATGCCGACACCTTTGTAGATGTGGTTGGAACCGCACCG
GCTGCTCCTCCGCCTCCATCTCCGCCTGTGCCAGCCACTGCTACTGCCCC
TGCTTCGTCATCCAGCGATCCGACGATGGCCAAGCCGAAGCGCAGCAGCT
TCAGCATCTCGGACATATTAGGAACCAGCTCGTCCATTTAACGAAGCTTT
CTAGACCAT

BS01512.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-RA 1275 CG5093-PA 1..1275 17..1291 6375 100 Plus
Doc1-RB 1071 CG5133-PB 70..645 191..766 1500 84 Plus
Doc1-RA 1176 CG5133-PA 175..750 191..766 1500 84 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-RA 1671 CG5093-RA 123..1397 17..1291 6375 100 Plus
Doc1-RB 1339 CG5133-RB 153..728 191..766 1500 84 Plus
Doc1-RA 1526 CG5133-RA 340..915 191..766 1500 84 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9006361..9006975 677..1291 3075 100 Plus
3L 28110227 3L 9005772..9006042 271..541 1355 100 Plus
3L 28110227 3L 9043385..9043642 271..528 870 89.1 Plus
3L 28110227 3L 9005470..9005636 107..273 835 100 Plus
3L 28110227 3L 9006159..9006296 542..679 690 100 Plus
3L 28110227 3L 9014716..9014937 533..312 495 81.5 Minus
3L 28110227 3L 9005318..9005408 17..107 455 100 Plus
3L 28110227 3L 9014492..9014626 679..545 405 86.7 Minus
3L 28110227 3L 9013533..9013624 768..677 265 85.9 Minus
3L 28110227 3L 9042116..9042196 191..271 240 86.4 Plus
3L 28110227 3L 9043724..9043861 542..679 225 77.5 Plus
3L 28110227 3L 9044342..9044431 677..766 210 82.2 Plus
Blast to na_te.dros performed on 2014-11-27 16:02:35 has no hits.

BS01512.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:55 Download gff for BS01512.complete
Subject Subject Range Query Range Percent Splice Strand
Doc3-RA 1..1275 17..1291 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:49 Download gff for BS01512.complete
Subject Subject Range Query Range Percent Splice Strand
Doc3-RA 121..1405 17..1304 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:03 Download gff for BS01512.complete
Subject Subject Range Query Range Percent Splice Strand
Doc3-RA 128..1397 22..1293 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:55 Download gff for BS01512.complete
Subject Subject Range Query Range Percent Splice Strand
Doc3-RA 121..1405 17..1304 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:01 Download gff for BS01512.complete
Subject Subject Range Query Range Percent Splice Strand
Doc3-RA 128..1397 22..1293 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:01 Download gff for BS01512.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9005323..9005408 22..107 100 -> Plus
3L 9005471..9005636 108..273 100 -> Plus
3L 9005775..9006042 274..541 100 -> Plus
3L 9006159..9006296 542..679 100 -> Plus
3L 9006364..9006975 680..1293 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:03 Download gff for BS01512.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8998423..8998508 22..107 100 -> Plus
arm_3L 8998571..8998736 108..273 100 -> Plus
arm_3L 8998875..8999142 274..541 100 -> Plus
arm_3L 8999259..8999396 542..679 100 -> Plus
arm_3L 8999464..9000075 680..1293 99   Plus

BS01512.pep Sequence

Translation from 16 to 1290

> BS01512.pep
MLTLPNIADLRLQQQIAQEIYRQQIMQRLPDPLCGLLPNFAGHFMPPPPP
PQPTLPGDVEAKLENNELWQQFHSIGTEMIITKCGRRMFPSMRVSLSGLE
EEASYCVLLEMVPIGDCRYKFSGSQWVPAGGAEPQSPQRMYLHPESPATG
KHWQSQALLFSKVKLTNNTLDNNGHIVLASMHKYQPRLHVIRTSDLGQIP
WAPQQAFIFPETEFIAVTAYQNDRITKLKIDNNPFAKGFRESGQSRCKRK
INDSPPPTQPEANQVDRSPVTSPLAKRLRLVEEFPQHHHHQSHHSVPMQR
HYLLDALEANFYVPAPPPPAIEYARHIGGAYPSWAYTPPSPASSVSSSSA
GSTSGESAADREADADADTFVDVVGTAPAAPPPPSPPVPATATAPASSSS
DPTMAKPKRSSFSISDILGTSSSI*

BS01512.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-PA 424 CG5093-PA 1..424 1..424 2256 100 Plus
Doc1-PA 391 CG5133-PA 1..389 1..418 1161 59.4 Plus
Doc2-PA 469 CG5187-PA 1..252 1..255 1065 77.2 Plus
Doc1-PB 356 CG5133-PB 16..354 50..418 1046 60.6 Plus
bi-PE 970 CG3578-PE 319..685 50..400 609 37.6 Plus