Clone Sequence Records
BS01516.3prime Sequence
864 bp (794 high quality bases) assembled on 2005-11-29
> BS01516.3prime
ATGGTCTAGAAAGCTTCGTTAATAAAATTTACAAGGACTATTGTGCTGGG
CGTTGCTGATGACGACACACGGGCCGTGCTGCACCTTCACGGAGCTCTCG
CTGCGCCAGTCGCACTCGATGGGCACAAACTGACCCTTCCGCATCATGGT
CTTGGGCTTGGTGATGCCGTAGCAGGCGTGCTGGAAGACGCTTCTCGAGA
TGGGCAGGCACTGCTCGTAGATCTCCACGATGTCCGCGTGCATGCTGTCC
ACGGAGAAGTCCTGGCCACAGCGCAGCTTCTGGTGGATGTGCAGTTTGCT
GCGTCGCGAGAACTGGGTGCGACACCTCCGGCAGTGGAGGTCCTTTAGCG
GCGAGCTGGTCTGATCCCTTTCGATGGAATTGACGGGGGTGGAGAGCTCG
TGGAGCCGCTGGAATTGGCCCATGATATTGTTCAGGATGAGGAAGTTCTT
GTTGGGCAGCTGCTGGAGGGTTTCGCTGATATGATAGGGCACCACATACA
GCTCCTTGGTGGTCTTGCACTGCTGCAGTCCGTAGAGATTGACGCGCATG
TTGGGCGGGAAGTAGCCGTTGCACTCGCGGAAGTGCTTCAGGTAGGCGGA
GCGCAGACTGGCAAGCTCTGCCTCGCTGGTGGAGCAGCCGGTAGTGGCGG
TCAGGCCCTCCTCCTCCTGAAGCTGCAGGGGTAGGGCGAAGACGGACGAG
TCCGCTGACTGACCGTCCGCCTCCACCCTAATCCTCTTCACCTGTACTTT
TCATCTGGTGATGCTGCACTCTGCCATGCCGTACTCGCTGCTGCAGTTGA
GGTAGTTTTCAATCCTCTGCATAAGCATCTCGTAGACCACGCCCCACGAT
TCGTCTACGTCGTA
BS01516.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4216-PA | 1287 | term-RA | 462..1287 | 844..19 | 4080 | 99.7 | Minus |
| CG7271-PA | 1284 | CG7271-RA | 459..1284 | 844..19 | 4005 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| term-RA | 1469 | CG4216-RA | 602..1447 | 864..19 | 4155 | 99.5 | Minus |
| CG7271-RA | 1407 | CG7271-RA | 539..1384 | 864..19 | 4110 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18592325..18593170 | 19..864 | 4155 | 99.4 | Plus |
| 3L | 28110227 | 3L | 18589297..18590142 | 864..19 | 4110 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:12:02 has no hits.
BS01516.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:38 Download gff for
BS01516.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-PA | 443..1287 | 19..863 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:03 Download gff for
BS01516.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4216-PA | 443..1287 | 19..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:16:43 Download gff for
BS01516.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 603..1451 | 15..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:18 Download gff for
BS01516.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 603..1451 | 15..863 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:18 Download gff for
BS01516.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18592321..18593169 | 15..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:16:43 Download gff for
BS01516.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18585421..18586269 | 15..863 | 99 | | Plus |
BS01516.5prime Sequence
872 bp (807 high quality bases) assembled on 2005-11-29
> BS01516.5prime
GAAGTTATCAGTCGACATGTTCGACGAGCCCATAATCTCCAGCTTCGTTT
TTACCAACGAGGAGACCACGCAGACATTCCACCACCAGTGGTTTTCCCAG
GGCCAGTTACACGAATGTGCCACCTGCTACAGCTCCATCGACGCAGATGA
GCCGCCCTCCCAGCATTGGCTGCGGGGAGGAGAAGCATCACAGGGCTTGC
ATCTTACCAAGCAACAGCAGGCCGTTATGGATATTATCGAGGCCCGCCAG
ATCGAGACTTTCTTCTTCTGCGACGAGAGTTCCAAGGACAAGCTGGAACA
CTTCATGGGCGAGACCTGTGCGAGGGGAATCCCCGAGCTTCTCCGCTGGA
TGTTCCAGAACAACACCGTGGCCGTGGAGTTCAATCTGGCCTGCTACGTG
AACGCCATGGACCAGGTGTTGATCTTTCAGAGCGGCTCGCTGAGGGCGGA
CCACCACTACGACGTAGACGAATCCGTGGGCGTGGTCTACGAGATGCTTA
TGCAGAGGATTGAAAACTACCTCAACTGCAGCAGCGAGTACGGCATGGCA
GAGTGCAGCATCACCAGATTGAAAGTACAGGTGAAGAGGATTAGGGTGGA
GGCGGACGGTCAGTCAGCGGACTCGTCCGTCTTCGCCCTACCCCTGCAGC
TTCAGGAGGAGGAGGGCCTGACCGCCACTACCGGCTGCTCCACCAGCGAG
GCAGAGCTTGCCAGTCTGCGCTCCGCCTACCTGAAGCACTTCCGCGAGTG
CAACGGCTACTTCCCGCCCAACATGCGCGTCAATCTCTACGGACTGCAGC
AGTGCAAGACCCACCAGGAGCTGTATGTGGTGCCCTATCATATCAGCGAA
ACCCTCCAGCAGCTGCCCAACA
BS01516.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4216-PA | 1287 | term-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
| CG7271-PA | 1284 | CG7271-RA | 19..792 | 38..811 | 3695 | 99 | Plus |
| CG4216-PA | 1287 | term-RA | 800..856 | 816..872 | 285 | 100 | Plus |
| CG7271-PA | 1284 | CG7271-RA | 797..853 | 816..872 | 285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| term-RA | 1469 | CG4216-RA | 160..1016 | 16..872 | 4240 | 99.8 | Plus |
| CG7271-RA | 1407 | CG7271-RA | 100..953 | 16..872 | 4080 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18592756..18593612 | 872..16 | 4240 | 99.6 | Minus |
| 3L | 28110227 | 3L | 18588858..18589711 | 16..872 | 4055 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:34:59 has no hits.
BS01516.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:39 Download gff for
BS01516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:04 Download gff for
BS01516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4216-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:21:40 Download gff for
BS01516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 151..1015 | 6..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:25:42 Download gff for
BS01516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 151..1015 | 6..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:25:42 Download gff for
BS01516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18592757..18593621 | 6..871 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:21:40 Download gff for
BS01516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18585857..18586721 | 6..871 | 99 | | Minus |
BS01516.complete Sequence
1321 bp (1321 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634630
> BS01516.complete
GAAGTTATCAGTCGACATGTTCGACGAGCCCATAATCTCCAGCTTCGTTT
TTACCAACGAGGAGACCACGCAGACATTCCACCACCAGTGGTTTTCCCAG
GGCCAGTTACACGAATGTGCCACCTGCTACAGCTCCATCGACGCAGATGA
GCCGCCCTCCCAGCATTGGCTGCGGGGAGGAGAAGCATCACAGGGCTTGC
ATCTTACCAAGCAACAGCAGGCCGTTATGGATATTATCGAGGCCCGCCAG
ATCGAGACTTTCTTCTTCTGCGACGAGAGTTCCAAGGACAAGCTGGAACA
CTTCATGGGCGAGACCTGTGCGAGGGGAATCCCCGAGCTTCTCCGCTGGA
TGTTCCAGAACAACACCGTGGCCGTGGAGTTCAATCTGGCCTGCTACGTG
AACGCCATGGACCAGGTGTTGATCTTTCAGAGCGGCTCGCTGAGGGCGGA
CCACCACTACGACGTAGACGAATCCGTGGGCGTGGTCTACGAGATGCTTA
TGCAGAGGATTGAAAACTACCTCAACTGCAGCAGCGAGTACGGCATGGCA
GAGTGCAGCATCACCAGATTGAAAGTACAGGTGAAGAGGATTAGGGTGGA
GGCGGACGGTCAGTCAGCGGACTCGTCCGTCTTCGCCCTACCCCTGCAGC
TTCAGGAGGAGGAGGGCCTGACCGCCACTACCGGCTGCTCCACCAGCGAG
GCAGAGCTTGCCAGTCTGCGCTCCGCCTACCTGAAGCACTTCCGCGAGTG
CAACGGCTACTTCCCGCCCAACATGCGCGTCAATCTCTACGGACTGCAGC
AGTGCAAGACCACCAAGGAGCTGTATGTGGTGCCCTATCATATCAGCGAA
ACCCTCCAGCAGCTGCCCAACAAGAACTTCCTCATCCTGAACAATATCAT
GGGCCAATTCCAGCGGCTCCACGAGCTCTCCACCCCCGTCAATTCCATCG
AAAGGGATCAGACCAGCTCGCCGCTAAAGGACCTCCACTGCCGGAGGTGT
CGCACCCAGTTCTCGCGACGCAGCAAACTGCACATCCACCAGAAGCTGCG
CTGTGGCCAGGACTTCTCCGTGGACAGCATGCACGCGGACATCGTGGAGA
TCTACGAGCAGTGCCTGCCCATCTCGAGAAGCGTCTTCCAGCACGCCTGC
TACGGCATCACCAAGCCCAAGACCATGATGCGGAAGGGTCAGTTTGTGCC
CATCGAGTGCGACTGGCGCAGCGAGAGCTCCGTGAAGGTGCAGCACGGCC
CGTGTGTCGTCATCAGCAACGCCCAGCACAATAGTCCTTGTAAATTTTAT
TAACGAAGCTTTCTAGACCAT
BS01516.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:06:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| term-RA | 1287 | CG4216-PA | 1..1287 | 17..1303 | 6435 | 100 | Plus |
| CG7271-RA | 1284 | CG7271-PA | 1..1284 | 17..1303 | 6235 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| term-RA | 1469 | CG4216-RA | 160..1447 | 16..1303 | 6440 | 100 | Plus |
| CG7271-RA | 1407 | CG7271-RA | 100..1384 | 16..1303 | 6240 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18592325..18593612 | 1303..16 | 6440 | 100 | Minus |
| 3L | 28110227 | 3L | 18588858..18590142 | 16..1303 | 6240 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:06:06 has no hits.
BS01516.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:46 Download gff for
BS01516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 1..1287 | 17..1303 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:35 Download gff for
BS01516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 145..1445 | 6..1307 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:24 Download gff for
BS01516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 166..1447 | 22..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:46 Download gff for
BS01516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 145..1445 | 6..1307 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:44 Download gff for
BS01516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| term-RA | 166..1447 | 22..1305 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:44 Download gff for
BS01516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18592323..18593606 | 22..1305 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:24 Download gff for
BS01516.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18585423..18586706 | 22..1305 | 99 | | Minus |
BS01516.pep Sequence
Translation from 16 to 1302
> BS01516.pep
MFDEPIISSFVFTNEETTQTFHHQWFSQGQLHECATCYSSIDADEPPSQH
WLRGGEASQGLHLTKQQQAVMDIIEARQIETFFFCDESSKDKLEHFMGET
CARGIPELLRWMFQNNTVAVEFNLACYVNAMDQVLIFQSGSLRADHHYDV
DESVGVVYEMLMQRIENYLNCSSEYGMAECSITRLKVQVKRIRVEADGQS
ADSSVFALPLQLQEEEGLTATTGCSTSEAELASLRSAYLKHFRECNGYFP
PNMRVNLYGLQQCKTTKELYVVPYHISETLQQLPNKNFLILNNIMGQFQR
LHELSTPVNSIERDQTSSPLKDLHCRRCRTQFSRRSKLHIHQKLRCGQDF
SVDSMHADIVEIYEQCLPISRSVFQHACYGITKPKTMMRKGQFVPIECDW
RSESSVKVQHGPCVVISNAQHNSPCKFY*
BS01516.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| term-PA | 428 | CG4216-PA | 1..428 | 1..428 | 2285 | 100 | Plus |
| CG7271-PA | 427 | CG7271-PA | 1..427 | 1..428 | 2240 | 98.8 | Plus |
| CG6885-PA | 378 | CG6885-PA | 7..377 | 8..385 | 467 | 27.9 | Plus |
