Clone BS01518 Report

Search the DGRC for BS01518

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:15
Well:18
Vector:pDNR-Dual
Associated Gene/Transcriptdpn-RA
Protein status:BS01518.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01518.3prime Sequence

855 bp (774 high quality bases) assembled on 2005-11-29

> BS01518.3prime
ATGGTCTAGAAAGCTTCGCTACCACGGCCTCCAAGCGGAGCTCGACTTTT
CGATGGCGCCAGCTAGGAATTTCTTGGACGAGGGCTCGTCCAGGGAGCAG
TCGCTGGACTCGGCCTCCGCCTCCCTGTCGCGCTTGGCGATTCCGCTGGT
GGAGCTCACTTGCTGTTGCTGCAAGTGGGCCAGCGGTCGCGAGCATCCGC
TGCTGTCGTGGCTTCCGGCACTCAAGTTGAGGGATCCGCTGGTGTTGAAG
GAGGTCTCCGCGCTGGTTGGTGGCGGAGTTGAGAAGACGCCGGCGAAACT
GTGCTTGCTCATCACATCCACGGTGGGCGAGGCAGCCCGGGACTCCTCGC
AGTGGCTGGAGATGGAGGAGATTGGGCTCAGCGGTGGGCTTGTGCTGTTC
TTCACCGGCAGCTGCGTTTGGCCGGGCAGTGTGTGGATGAGGTTTTCCGG
AAGATTGGCCGGAACTGAGGTATTGACCGGTTTGCTGAACGCGCTCATCC
TGAAGCTCTGTGTATAGTCATTTAGATGTGTGGGATTGGCAATGCTGGCC
AAGGCGGCACTGGCTGTTCCAGCTGCGACTCCCGCTGCAGATCCTGGCCA
GGCAAAGGGTCCCGGAGGCGGAGCAGCGGAACCTGTGTTCGGCATGATGA
GGGCAAACTCTCCCGAGGGCAGGCGGGAGGGAATTAGCTGAAGTCCACCC
ATTTGGATGGCCGGAGCCGATGACTCCGTGCGGCTGTTGTTGTTCAAGTC
CTGCGGCAACGAGGGAAACAGCGGAGTGGGAGCAGCCGTGACAGCTGTGG
CGGGAAACAGCCCACACGGTATCCATTGCTGAGGGTGCTCATCGAACCGA
TCTGC

BS01518.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8704-PA 1308 dpn-RA 518..1308 809..19 3955 100 Minus
CG8704-PA 1308 dpn-RA 471..511 855..815 155 95.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
dpn-RA 2036 CG8704-RA 753..1590 855..19 4105 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8229417..8230254 19..855 4080 99.4 Plus
Blast to na_te.dros performed on 2015-01-30 16:44:49 has no hits.

BS01518.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:43 Download gff for BS01518.3prime
Subject Subject Range Query Range Percent Splice Strand
dpn-PA 471..1308 19..855 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:08 Download gff for BS01518.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8704-PA 471..1308 19..855 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:28:57 Download gff for BS01518.3prime
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 753..1590 19..855 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:54:19 Download gff for BS01518.3prime
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 753..1590 19..855 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:54:19 Download gff for BS01518.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8229417..8230254 19..855 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:28:57 Download gff for BS01518.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4116922..4117759 19..855 99   Plus

BS01518.5prime Sequence

864 bp (785 high quality bases) assembled on 2005-11-29

> BS01518.5prime
GAAGTTATCAGTCGACATGGATTACAAAAACGATATTAATTCCGACGACG
ATTTCGACTGCTCCAACGGCTATAGCGACAGCTATGGCTCCAATGGACGC
ATGTCCAATCCCAATGGATTGTCAAAAGCAGAACTTAGAAAGACCAACAA
ACCGATTATGGAGAAACGTCGCCGAGCTCGCATTAATCACTGCCTCAACG
AACTGAAGTCCCTTATCCTGGAGGCGATGAAAAAAGACCCGGCTCGTCAT
ACCAAACTGGAGAAGGCCGACATACTTGAGATGACGGTGAAGCATCTGCA
GTCGGTGCAGCGCCAGCAGCTCAACATGGCCATCCAATCGGATCCCAGCG
TTGTCCAGAAGTTCAAGACGGGATTCGTTGAGTGCGCGGAGGAGGTGAAC
CGCTATGTAAGCCAAATGGATGGCATCGATACCGGTGTTCGTCAGCGGCT
CAGCGCCCATCTTAACCAGTGTGCCAATAGTCTGGAGCAGATCGGTTCGA
TGAGCAACTTCAGCAATGGATACCGTGGTGGCTTGTTTCCCGCCACAGCT
GTCACGGCTGCTCCCACTCCGCTGTTTCCCTCGTTGCCGCAGGACTTGAA
CAACAACAGCCGCACGGAGTCATCGGCTCCGGCCATCCAAATGGGTGGAC
TTCAGCTAATTCCCTCCCGCCTGCCCTCGGGAGAGTTTGCCCTCATCATG
CCGAACACAGGTTCCGCTGCTCCGCCTCCGGGACCCTTTGCCTGGCCAGG
ATCTGCAGCGGGAGTCGCAGCTGGAACAGCCAGTGCCGCCTTGGCCAGCA
TTGCCAATCCCACACATCTAAATGACTATACACAGAGCTTCAGGATGAGC
GCGTTCAGCAAACC

BS01518.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8704-PA 1308 dpn-RA 1..848 17..864 4240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
dpn-RA 2036 CG8704-RA 283..1130 17..864 4240 100 Plus
h-RB 2335 CG6494-RB 594..767 146..319 360 80.5 Plus
h-RA 2139 CG6494-RA 398..571 146..319 360 80.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8229877..8230502 864..239 3130 100 Minus
2R 25286936 2R 8231923..8232048 142..17 630 100 Minus
2R 25286936 2R 8231599..8231696 238..141 490 100 Minus
3L 28110227 3L 8677605..8677685 239..319 210 84 Plus
Blast to na_te.dros performed on 2015-02-12 12:33:19 has no hits.

BS01518.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:44 Download gff for BS01518.5prime
Subject Subject Range Query Range Percent Splice Strand
dpn-PA 1..848 17..864 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:09 Download gff for BS01518.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8704-PA 1..848 17..864 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:21:33 Download gff for BS01518.5prime
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 283..1130 17..864 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:20:09 Download gff for BS01518.5prime
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 283..1130 17..864 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:20:09 Download gff for BS01518.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8229877..8230502 239..864 100 <- Minus
2R 8231599..8231694 143..238 100 <- Minus
2R 8231923..8232048 17..142 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:21:33 Download gff for BS01518.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4117382..4118007 239..864 100 <- Minus
arm_2R 4119104..4119199 143..238 100 <- Minus
arm_2R 4119428..4119553 17..142 100   Minus

BS01518.complete Sequence

1342 bp (1342 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634631

> BS01518.complete
GAAGTTATCAGTCGACATGGATTACAAAAACGATATTAATTCCGACGACG
ATTTCGACTGCTCCAACGGCTATAGCGACAGCTATGGCTCCAATGGACGC
ATGTCCAATCCCAATGGATTGTCAAAAGCAGAACTTAGAAAGACCAACAA
ACCGATTATGGAGAAACGTCGCCGAGCTCGCATTAATCACTGCCTCAACG
AACTGAAGTCCCTTATCCTGGAGGCGATGAAAAAAGACCCGGCTCGTCAT
ACCAAACTGGAGAAGGCCGACATACTTGAGATGACGGTGAAGCATCTGCA
GTCGGTGCAGCGCCAGCAGCTCAACATGGCCATCCAATCGGATCCCAGCG
TTGTCCAGAAGTTCAAGACGGGATTCGTTGAGTGCGCGGAGGAGGTGAAC
CGCTATGTAAGCCAAATGGATGGCATCGATACCGGTGTTCGTCAGCGGCT
CAGCGCCCATCTTAACCAGTGTGCCAATAGTCTGGAGCAGATCGGTTCGA
TGAGCAACTTCAGCAATGGATACCGTGGTGGCTTGTTTCCCGCCACAGCT
GTCACGGCTGCTCCCACTCCGCTGTTTCCCTCGTTGCCGCAGGACTTGAA
CAACAACAGCCGCACGGAGTCATCGGCTCCGGCCATCCAAATGGGTGGAC
TTCAGCTAATTCCCTCCCGCCTGCCCTCGGGAGAGTTTGCCCTCATCATG
CCGAACACAGGTTCCGCTGCTCCGCCTCCGGGACCCTTTGCCTGGCCAGG
ATCTGCAGCGGGAGTCGCAGCTGGAACAGCCAGTGCCGCCTTGGCCAGCA
TTGCCAATCCCACACATCTAAATGACTATACACAGAGCTTCAGGATGAGC
GCGTTCAGCAAACCGGTCAATACCTCAGTTCCGGCCAATCTTCCGGAAAA
CCTCATCCACACACTGCCCGGCCAAACGCAGCTGCCGGTGAAGAACAGCA
CAAGCCCACCGCTGAGCCCAATCTCCTCCATCTCCAGCCACTGCGAGGAG
TCCCGGGCTGCCTCGCCCACCGTGGATGTGATGAGCAAGCACAGTTTCGC
CGGCGTCTTCTCAACTCCGCCACCAACCAGCGCGGAGACCTCCTTCAACA
CCAGCGGATCCCTCAACTTGAGTGCCGGAAGCCACGACAGCAGCGGATGC
TCGCGACCGCTGGCCCACTTGCAGCAACAGCAAGTGAGCTCCACCAGCGG
AATCGCCAAGCGCGACAGGGAGGCGGAGGCCGAGTCCAGCGACTGCTCCC
TGGACGAGCCCTCGTCCAAGAAATTCCTAGCTGGCGCCATCGAAAAGTCG
AGCTCCGCTTGGAGGCCGTGGTAGCGAAGCTTTCTAGACCAT

BS01518.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
dpn-RA 1308 CG8704-PA 1..1308 17..1324 6540 100 Plus
h-RB 1014 CG6494-PB 103..276 146..319 360 80.5 Plus
h-RA 1014 CG6494-PA 103..276 146..319 360 80.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
dpn-RA 2036 CG8704-RA 283..1590 17..1324 6540 100 Plus
h-RB 2335 CG6494-RB 594..767 146..319 360 80.5 Plus
h-RA 2139 CG6494-RA 398..571 146..319 360 80.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8229417..8230502 1324..239 5430 100 Minus
2R 25286936 2R 8231923..8232048 142..17 630 100 Minus
2R 25286936 2R 8231599..8231696 238..141 490 100 Minus
3L 28110227 3L 8677605..8677685 239..319 210 84 Plus
Blast to na_te.dros performed on 2014-11-27 11:07:42 has no hits.

BS01518.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:47 Download gff for BS01518.complete
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 1..1308 17..1324 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:37 Download gff for BS01518.complete
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 280..1587 17..1324 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:02 Download gff for BS01518.complete
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 283..1590 17..1326 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:47 Download gff for BS01518.complete
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 280..1587 17..1324 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:22 Download gff for BS01518.complete
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 283..1590 17..1326 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:22 Download gff for BS01518.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8231923..8232048 17..142 100   Minus
2R 8229415..8230502 239..1326 99 <- Minus
2R 8231599..8231694 143..238 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:02 Download gff for BS01518.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4116920..4118007 239..1326 99 <- Minus
arm_2R 4119104..4119199 143..238 100 <- Minus
arm_2R 4119428..4119553 17..142 100   Minus

BS01518.pep Sequence

Translation from 16 to 1323

> BS01518.pep
MDYKNDINSDDDFDCSNGYSDSYGSNGRMSNPNGLSKAELRKTNKPIMEK
RRRARINHCLNELKSLILEAMKKDPARHTKLEKADILEMTVKHLQSVQRQ
QLNMAIQSDPSVVQKFKTGFVECAEEVNRYVSQMDGIDTGVRQRLSAHLN
QCANSLEQIGSMSNFSNGYRGGLFPATAVTAAPTPLFPSLPQDLNNNSRT
ESSAPAIQMGGLQLIPSRLPSGEFALIMPNTGSAAPPPGPFAWPGSAAGV
AAGTASAALASIANPTHLNDYTQSFRMSAFSKPVNTSVPANLPENLIHTL
PGQTQLPVKNSTSPPLSPISSISSHCEESRAASPTVDVMSKHSFAGVFST
PPPTSAETSFNTSGSLNLSAGSHDSSGCSRPLAHLQQQQVSSTSGIAKRD
REAEAESSDCSLDEPSSKKFLAGAIEKSSSAWRPW*

BS01518.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
dpn-PA 435 CG8704-PA 1..435 1..435 2244 100 Plus
h-PB 337 CG6494-PB 32..219 41..231 411 47 Plus
h-PA 337 CG6494-PA 32..219 41..231 411 47 Plus
E(spl)mgamma-HLH-PA 205 CG8333-PA 14..134 39..157 244 38.8 Plus
Side-PA 507 CG10446-PA 51..507 41..435 238 24.9 Plus