Clone Sequence Records
BS01518.3prime Sequence
855 bp (774 high quality bases) assembled on 2005-11-29
> BS01518.3prime
ATGGTCTAGAAAGCTTCGCTACCACGGCCTCCAAGCGGAGCTCGACTTTT
CGATGGCGCCAGCTAGGAATTTCTTGGACGAGGGCTCGTCCAGGGAGCAG
TCGCTGGACTCGGCCTCCGCCTCCCTGTCGCGCTTGGCGATTCCGCTGGT
GGAGCTCACTTGCTGTTGCTGCAAGTGGGCCAGCGGTCGCGAGCATCCGC
TGCTGTCGTGGCTTCCGGCACTCAAGTTGAGGGATCCGCTGGTGTTGAAG
GAGGTCTCCGCGCTGGTTGGTGGCGGAGTTGAGAAGACGCCGGCGAAACT
GTGCTTGCTCATCACATCCACGGTGGGCGAGGCAGCCCGGGACTCCTCGC
AGTGGCTGGAGATGGAGGAGATTGGGCTCAGCGGTGGGCTTGTGCTGTTC
TTCACCGGCAGCTGCGTTTGGCCGGGCAGTGTGTGGATGAGGTTTTCCGG
AAGATTGGCCGGAACTGAGGTATTGACCGGTTTGCTGAACGCGCTCATCC
TGAAGCTCTGTGTATAGTCATTTAGATGTGTGGGATTGGCAATGCTGGCC
AAGGCGGCACTGGCTGTTCCAGCTGCGACTCCCGCTGCAGATCCTGGCCA
GGCAAAGGGTCCCGGAGGCGGAGCAGCGGAACCTGTGTTCGGCATGATGA
GGGCAAACTCTCCCGAGGGCAGGCGGGAGGGAATTAGCTGAAGTCCACCC
ATTTGGATGGCCGGAGCCGATGACTCCGTGCGGCTGTTGTTGTTCAAGTC
CTGCGGCAACGAGGGAAACAGCGGAGTGGGAGCAGCCGTGACAGCTGTGG
CGGGAAACAGCCCACACGGTATCCATTGCTGAGGGTGCTCATCGAACCGA
TCTGC
BS01518.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8704-PA | 1308 | dpn-RA | 518..1308 | 809..19 | 3955 | 100 | Minus |
CG8704-PA | 1308 | dpn-RA | 471..511 | 855..815 | 155 | 95.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpn-RA | 2036 | CG8704-RA | 753..1590 | 855..19 | 4105 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:44:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8229417..8230254 | 19..855 | 4080 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:44:49 has no hits.
BS01518.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:43 Download gff for
BS01518.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpn-PA | 471..1308 | 19..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:08 Download gff for
BS01518.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8704-PA | 471..1308 | 19..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:28:57 Download gff for
BS01518.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpn-RA | 753..1590 | 19..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:54:19 Download gff for
BS01518.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpn-RA | 753..1590 | 19..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:54:19 Download gff for
BS01518.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8229417..8230254 | 19..855 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:28:57 Download gff for
BS01518.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4116922..4117759 | 19..855 | 99 | | Plus |
BS01518.5prime Sequence
864 bp (785 high quality bases) assembled on 2005-11-29
> BS01518.5prime
GAAGTTATCAGTCGACATGGATTACAAAAACGATATTAATTCCGACGACG
ATTTCGACTGCTCCAACGGCTATAGCGACAGCTATGGCTCCAATGGACGC
ATGTCCAATCCCAATGGATTGTCAAAAGCAGAACTTAGAAAGACCAACAA
ACCGATTATGGAGAAACGTCGCCGAGCTCGCATTAATCACTGCCTCAACG
AACTGAAGTCCCTTATCCTGGAGGCGATGAAAAAAGACCCGGCTCGTCAT
ACCAAACTGGAGAAGGCCGACATACTTGAGATGACGGTGAAGCATCTGCA
GTCGGTGCAGCGCCAGCAGCTCAACATGGCCATCCAATCGGATCCCAGCG
TTGTCCAGAAGTTCAAGACGGGATTCGTTGAGTGCGCGGAGGAGGTGAAC
CGCTATGTAAGCCAAATGGATGGCATCGATACCGGTGTTCGTCAGCGGCT
CAGCGCCCATCTTAACCAGTGTGCCAATAGTCTGGAGCAGATCGGTTCGA
TGAGCAACTTCAGCAATGGATACCGTGGTGGCTTGTTTCCCGCCACAGCT
GTCACGGCTGCTCCCACTCCGCTGTTTCCCTCGTTGCCGCAGGACTTGAA
CAACAACAGCCGCACGGAGTCATCGGCTCCGGCCATCCAAATGGGTGGAC
TTCAGCTAATTCCCTCCCGCCTGCCCTCGGGAGAGTTTGCCCTCATCATG
CCGAACACAGGTTCCGCTGCTCCGCCTCCGGGACCCTTTGCCTGGCCAGG
ATCTGCAGCGGGAGTCGCAGCTGGAACAGCCAGTGCCGCCTTGGCCAGCA
TTGCCAATCCCACACATCTAAATGACTATACACAGAGCTTCAGGATGAGC
GCGTTCAGCAAACC
BS01518.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8704-PA | 1308 | dpn-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpn-RA | 2036 | CG8704-RA | 283..1130 | 17..864 | 4240 | 100 | Plus |
h-RB | 2335 | CG6494-RB | 594..767 | 146..319 | 360 | 80.5 | Plus |
h-RA | 2139 | CG6494-RA | 398..571 | 146..319 | 360 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:33:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8229877..8230502 | 864..239 | 3130 | 100 | Minus |
2R | 25286936 | 2R | 8231923..8232048 | 142..17 | 630 | 100 | Minus |
2R | 25286936 | 2R | 8231599..8231696 | 238..141 | 490 | 100 | Minus |
3L | 28110227 | 3L | 8677605..8677685 | 239..319 | 210 | 84 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:33:19 has no hits.
BS01518.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:44 Download gff for
BS01518.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpn-PA | 1..848 | 17..864 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:09 Download gff for
BS01518.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8704-PA | 1..848 | 17..864 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:21:33 Download gff for
BS01518.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpn-RA | 283..1130 | 17..864 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:20:09 Download gff for
BS01518.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpn-RA | 283..1130 | 17..864 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:20:09 Download gff for
BS01518.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8229877..8230502 | 239..864 | 100 | <- | Minus |
2R | 8231599..8231694 | 143..238 | 100 | <- | Minus |
2R | 8231923..8232048 | 17..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:21:33 Download gff for
BS01518.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4117382..4118007 | 239..864 | 100 | <- | Minus |
arm_2R | 4119104..4119199 | 143..238 | 100 | <- | Minus |
arm_2R | 4119428..4119553 | 17..142 | 100 | | Minus |
BS01518.complete Sequence
1342 bp (1342 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634631
> BS01518.complete
GAAGTTATCAGTCGACATGGATTACAAAAACGATATTAATTCCGACGACG
ATTTCGACTGCTCCAACGGCTATAGCGACAGCTATGGCTCCAATGGACGC
ATGTCCAATCCCAATGGATTGTCAAAAGCAGAACTTAGAAAGACCAACAA
ACCGATTATGGAGAAACGTCGCCGAGCTCGCATTAATCACTGCCTCAACG
AACTGAAGTCCCTTATCCTGGAGGCGATGAAAAAAGACCCGGCTCGTCAT
ACCAAACTGGAGAAGGCCGACATACTTGAGATGACGGTGAAGCATCTGCA
GTCGGTGCAGCGCCAGCAGCTCAACATGGCCATCCAATCGGATCCCAGCG
TTGTCCAGAAGTTCAAGACGGGATTCGTTGAGTGCGCGGAGGAGGTGAAC
CGCTATGTAAGCCAAATGGATGGCATCGATACCGGTGTTCGTCAGCGGCT
CAGCGCCCATCTTAACCAGTGTGCCAATAGTCTGGAGCAGATCGGTTCGA
TGAGCAACTTCAGCAATGGATACCGTGGTGGCTTGTTTCCCGCCACAGCT
GTCACGGCTGCTCCCACTCCGCTGTTTCCCTCGTTGCCGCAGGACTTGAA
CAACAACAGCCGCACGGAGTCATCGGCTCCGGCCATCCAAATGGGTGGAC
TTCAGCTAATTCCCTCCCGCCTGCCCTCGGGAGAGTTTGCCCTCATCATG
CCGAACACAGGTTCCGCTGCTCCGCCTCCGGGACCCTTTGCCTGGCCAGG
ATCTGCAGCGGGAGTCGCAGCTGGAACAGCCAGTGCCGCCTTGGCCAGCA
TTGCCAATCCCACACATCTAAATGACTATACACAGAGCTTCAGGATGAGC
GCGTTCAGCAAACCGGTCAATACCTCAGTTCCGGCCAATCTTCCGGAAAA
CCTCATCCACACACTGCCCGGCCAAACGCAGCTGCCGGTGAAGAACAGCA
CAAGCCCACCGCTGAGCCCAATCTCCTCCATCTCCAGCCACTGCGAGGAG
TCCCGGGCTGCCTCGCCCACCGTGGATGTGATGAGCAAGCACAGTTTCGC
CGGCGTCTTCTCAACTCCGCCACCAACCAGCGCGGAGACCTCCTTCAACA
CCAGCGGATCCCTCAACTTGAGTGCCGGAAGCCACGACAGCAGCGGATGC
TCGCGACCGCTGGCCCACTTGCAGCAACAGCAAGTGAGCTCCACCAGCGG
AATCGCCAAGCGCGACAGGGAGGCGGAGGCCGAGTCCAGCGACTGCTCCC
TGGACGAGCCCTCGTCCAAGAAATTCCTAGCTGGCGCCATCGAAAAGTCG
AGCTCCGCTTGGAGGCCGTGGTAGCGAAGCTTTCTAGACCAT
BS01518.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpn-RA | 1308 | CG8704-PA | 1..1308 | 17..1324 | 6540 | 100 | Plus |
h-RB | 1014 | CG6494-PB | 103..276 | 146..319 | 360 | 80.5 | Plus |
h-RA | 1014 | CG6494-PA | 103..276 | 146..319 | 360 | 80.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpn-RA | 2036 | CG8704-RA | 283..1590 | 17..1324 | 6540 | 100 | Plus |
h-RB | 2335 | CG6494-RB | 594..767 | 146..319 | 360 | 80.5 | Plus |
h-RA | 2139 | CG6494-RA | 398..571 | 146..319 | 360 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:07:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8229417..8230502 | 1324..239 | 5430 | 100 | Minus |
2R | 25286936 | 2R | 8231923..8232048 | 142..17 | 630 | 100 | Minus |
2R | 25286936 | 2R | 8231599..8231696 | 238..141 | 490 | 100 | Minus |
3L | 28110227 | 3L | 8677605..8677685 | 239..319 | 210 | 84 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:07:42 has no hits.
BS01518.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:47 Download gff for
BS01518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpn-RA | 1..1308 | 17..1324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:37 Download gff for
BS01518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpn-RA | 280..1587 | 17..1324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:02 Download gff for
BS01518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpn-RA | 283..1590 | 17..1326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:47 Download gff for
BS01518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpn-RA | 280..1587 | 17..1324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:22 Download gff for
BS01518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpn-RA | 283..1590 | 17..1326 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:22 Download gff for
BS01518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8231923..8232048 | 17..142 | 100 | | Minus |
2R | 8229415..8230502 | 239..1326 | 99 | <- | Minus |
2R | 8231599..8231694 | 143..238 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:02 Download gff for
BS01518.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4116920..4118007 | 239..1326 | 99 | <- | Minus |
arm_2R | 4119104..4119199 | 143..238 | 100 | <- | Minus |
arm_2R | 4119428..4119553 | 17..142 | 100 | | Minus |
BS01518.pep Sequence
Translation from 16 to 1323
> BS01518.pep
MDYKNDINSDDDFDCSNGYSDSYGSNGRMSNPNGLSKAELRKTNKPIMEK
RRRARINHCLNELKSLILEAMKKDPARHTKLEKADILEMTVKHLQSVQRQ
QLNMAIQSDPSVVQKFKTGFVECAEEVNRYVSQMDGIDTGVRQRLSAHLN
QCANSLEQIGSMSNFSNGYRGGLFPATAVTAAPTPLFPSLPQDLNNNSRT
ESSAPAIQMGGLQLIPSRLPSGEFALIMPNTGSAAPPPGPFAWPGSAAGV
AAGTASAALASIANPTHLNDYTQSFRMSAFSKPVNTSVPANLPENLIHTL
PGQTQLPVKNSTSPPLSPISSISSHCEESRAASPTVDVMSKHSFAGVFST
PPPTSAETSFNTSGSLNLSAGSHDSSGCSRPLAHLQQQQVSSTSGIAKRD
REAEAESSDCSLDEPSSKKFLAGAIEKSSSAWRPW*
BS01518.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpn-PA | 435 | CG8704-PA | 1..435 | 1..435 | 2244 | 100 | Plus |
h-PB | 337 | CG6494-PB | 32..219 | 41..231 | 411 | 47 | Plus |
h-PA | 337 | CG6494-PA | 32..219 | 41..231 | 411 | 47 | Plus |
E(spl)mgamma-HLH-PA | 205 | CG8333-PA | 14..134 | 39..157 | 244 | 38.8 | Plus |
Side-PA | 507 | CG10446-PA | 51..507 | 41..435 | 238 | 24.9 | Plus |