Clone BS01519 Report

Search the DGRC for BS01519

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:15
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG17802-RA
Protein status:BS01519.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01519.3prime Sequence

846 bp (845 high quality bases) assembled on 2005-11-29

> BS01519.3prime
ATGGTCTAGAAAGCTTCGTTATTTATTTTTGGAATCAATTTCGGACTTAG
CACTCATTGCGATCAGCTTATTTTGATGCTGCCTGGAGCGGTAGTGGGTC
TTCAAGTTCGAGTTCCGTGTAAAGGACACTTTGCAGACCTCACAGTGGAA
GTTACGCTCGCCGGTGTGGACCACCTCGTGCTTGGCCCTCTGGTAGTTCG
ACTCGTATCGCTTGTCGCAATAGTTGCACTTGAAGTTCTTTGGTGTTTTC
TTGTTCCGGTGTACCCGGTTTTCGTGGCGCGATCGCATAGTACTGTGCAC
AAAACGCTCGTCGCAGAACTGGCAAGCGTATGGCTTCTCTCCGCGGTGCT
TCACCCGAATGTGAATGTTCAGGATGTACCTGTTGAACTCCTTTTGTCCG
CACTCAGGACACTCGAAGGGCTTGACGCCCGAGTGGCGCAGCACGTGCAG
ATTAAAGTTGCCCTTGTCGGTGAATTTCTTGCCGCAATGGTCACAGATGT
GGACCTTTTGGCTTATGTATGTTTTTCGTTTTTTCTTCGCAGGTTTGAGA
AAGTCGGTGTCGTCGTTTTTGGGAGATGATCTCTTGGTGTATTTTCGACG
AGGCTTCTTATCTTCGTCAAGGGCCGATTGACGCGATGTGGCTTCTATAT
CTGACATAGAATCAGCATCTGTATCGCTGTCGCCGTCCTCGTTCTGCCAA
AGCTCGTCGTCGTCTTCCTGTGACTCCTCTTCGTCCTCCTCATTTTGCTG
ACTTTCCTCCTCATCTGGCTGTGACTCCTCACATTCCTGTGACTCCTCGC
CATCATCATGTCCTGTCTTTTTATCCACCATATCCTCATACTCCTG

BS01519.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17802-PA 1320 CG17802-RA 493..1320 846..19 4140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17802-RA 1706 CG17802-RA 574..1401 846..19 4140 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17804041..17804618 269..846 2890 100 Plus
3R 32079331 3R 17803530..17803656 19..145 635 100 Plus
3R 32079331 3R 17803856..17803978 146..268 615 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:33:11 has no hits.

BS01519.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:45 Download gff for BS01519.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-PA 493..1320 19..846 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:11 Download gff for BS01519.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-PA 493..1320 19..846 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:15:25 Download gff for BS01519.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 574..1401 19..846 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:50 Download gff for BS01519.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 574..1401 19..846 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:50 Download gff for BS01519.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17803530..17803656 19..145 100 <- Plus
3R 17803856..17803978 146..268 100 <- Plus
3R 17804041..17804618 269..846 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:15:25 Download gff for BS01519.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13629252..13629378 19..145 100 <- Plus
arm_3R 13629578..13629700 146..268 100 <- Plus
arm_3R 13629763..13630340 269..846 100   Plus

BS01519.5prime Sequence

806 bp (784 high quality bases) assembled on 2005-11-29

> BS01519.5prime
GAAGTTATCAGTCGACATGACGCCACAATGCCGGTTGTGTGGAGATTTAA
TATACACGCAAAATCCAGTTAACATATTCGATGAGAACAGCAAAATGGTC
AGGCAAATCGCATTGGTCACGGGCCTTTGGCTCACCGACCACTCGAAGAT
GCCCCGGAATATGTGCTCCTGCTGCCTGCTGAGCCTGAAGAGCGCCATTG
CCTTCCGGCAAGCCTGCATCAAGACCAACAATCGACTGACAATCCAGCGC
CGAAGTGTGGAAGCCAAGGATGACGGATGCTGGGCTGATCCGCTGAGCGA
TGCGCACGAGGGGCTGAAGATCAACGATGCGGAAGTGGAGCAGGAGGTGC
TGTACGAGGTGTCCTATGCGGATAATGAAGGACTGGAGGAAGACCACGAC
CTGTACAAGAAGGAGGAGGAAGAAAGCGAGGTTAATGAGAACAAGGAATT
TGAAGATATTGCCTGCGAAATACCCTTCAGTAAGGAGGATGATGAGCAAG
AGCAACAGCAGGAGTATGAGGATATGGTGGATAAAAAGACAGGACATGAT
GATGGCGAGGAGTCACAGGAATGTGAGGAGTCACAGCCAGATGAGGAGGA
AAGTCAGCAAAATGAGGAGGACGAAGAGGAGTCACAGGAAGACGACGACG
AGCTTTGGCAGAACGAGGACGGCGACAGCGATACAGATGCTGATTCTATG
TCAGATATAGAAGCCACATCGCGTCAATCGGCCCTTGACGAAGATAAGAA
GCCTCGTCGAAAATACACCAAGAGATCATCTCCCAAAAACGACGACACCG
ACTTTC

BS01519.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17802-PA 1320 CG17802-RA 1..790 17..806 3925 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17802-RA 1706 CG17802-RA 82..871 17..806 3935 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17804321..17804997 806..130 3370 99.9 Minus
3R 32079331 3R 17805055..17805168 130..17 570 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:40:22 has no hits.

BS01519.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:46 Download gff for BS01519.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-PA 1..790 17..806 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:12 Download gff for BS01519.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-PA 1..790 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:51:28 Download gff for BS01519.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 82..871 17..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:45:07 Download gff for BS01519.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 82..871 17..806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:45:07 Download gff for BS01519.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17804321..17804996 131..806 99 <- Minus
3R 17805055..17805168 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:51:28 Download gff for BS01519.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13630043..13630718 131..806 99 <- Minus
arm_3R 13630777..13630890 17..130 100   Minus

BS01519.complete Sequence

1354 bp (1354 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634632

> BS01519.complete
GAAGTTATCAGTCGACATGACGCCACAATGCCGGTTGTGTGGAGATTTAA
TATACACGCAAAATCCAGTTAACATATTCGATGAGAACAGCAAAATGGTC
AGGCAAATCGCATTGGTCACGGGCCTTTGGCTCACCGACCACTCGAAGAT
GCCCCGGAATATGTGCTCCTGCTGCCTGCTGAGCCTGAAGAGCGCCATTG
CCTTCCGGCAAGCCTGCATCAAGACCAACAATCGACTGACAATCCAGCGC
CGAAGTGTGGAAGCCAAGGATGACGGATGCTGGGCTGATCCGCTGAGCGA
TGCGCACGAGGGGCTGAAGATCAACGATGCGGAAGTGGAGCAGGAGGTGC
TGTACGAGGTGTCCTATGCGGATAATGAAGGACTGGAGGAAGACCACGAC
CTGTACAAGAAGGAGGAGGAAGAAAGCGAGGTTAATGAGAACAAGGAATT
TGAAGATATTGCCTGCGAAATACCCTTCAGTAAGGAGGATGATGAGCAAG
AGCAACAGCAGGAGTATGAGGATATGGTGGATAAAAAGACAGGACATGAT
GATGGCGAGGAGTCACAGGAATGTGAGGAGTCACAGCCAGATGAGGAGGA
AAGTCAGCAAAATGAGGAGGACGAAGAGGAGTCACAGGAAGACGACGACG
AGCTTTGGCAGAACGAGGACGGCGACAGCGATACAGATGCTGATTCTATG
TCAGATATAGAAGCCACATCGCGTCAATCGGCCCTTGACGAAGATAAGAA
GCCTCGTCGAAAATACACCAAGAGATCATCTCCCAAAAACGACGACACCG
ACTTTCTCAAACCTGCGAAGAAAAAACGAAAAACATACATAAGCCAAAAG
GTCCACATCTGTGACCATTGCGGCAAGAAATTCACCGACAAGGGCAACTT
TAATCTGCACGTGCTGCGCCACTCGGGCGTCAAGCCCTTCGAGTGTCCTG
AGTGCGGACAAAAGGAGTTCAACAGGTACATCCTGAACATTCACATTCGG
GTGAAGCACCGCGGAGAGAAGCCATACGCTTGCCAGTTCTGCGACGAGCG
TTTTGTGCACAGTACTATGCGATCGCGCCACGAAAACCGGGTACACCGGA
ACAAGAAAACACCAAAGAACTTCAAGTGCAACTATTGCGACAAGCGATAC
GAGTCGAACTACCAGAGGGCCAAGCACGAGGTGGTCCACACCGGCGAGCG
TAACTTCCACTGTGAGGTCTGCAAAGTGTCCTTTACACGGAACTCGAACT
TGAAGACCCACTACCGCTCCAGGCAGCATCAAAATAAGCTGATCGCAATG
AGTGCTAAGTCCGAAATTGATTCCAAAAATAAATAACGAAGCTTTCTAGA
CCAT

BS01519.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17802-RA 1320 CG17802-PA 1..1320 17..1336 6585 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17802-RA 1706 CG17802-RA 82..1401 17..1336 6585 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17804041..17804997 1086..130 4770 99.9 Minus
3R 32079331 3R 17803530..17803656 1336..1210 635 100 Minus
3R 32079331 3R 17803856..17803978 1209..1087 615 100 Minus
3R 32079331 3R 17805055..17805168 130..17 570 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:47:14 has no hits.

BS01519.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:48 Download gff for BS01519.complete
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 1..1320 17..1336 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:38 Download gff for BS01519.complete
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 81..1400 17..1336 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:30 Download gff for BS01519.complete
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 82..1389 17..1324 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:49 Download gff for BS01519.complete
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 81..1400 17..1336 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:55 Download gff for BS01519.complete
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 82..1389 17..1324 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:55 Download gff for BS01519.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17803856..17803978 1087..1209 100 <- Minus
3R 17803542..17803656 1210..1324 100 <- Minus
3R 17804041..17804996 131..1086 99 <- Minus
3R 17805055..17805168 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:30 Download gff for BS01519.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13630777..13630890 17..130 100   Minus
arm_3R 13629264..13629378 1210..1324 100 <- Minus
arm_3R 13629578..13629700 1087..1209 100 <- Minus
arm_3R 13629763..13630718 131..1086 99 <- Minus

BS01519.pep Sequence

Translation from 16 to 1335

> BS01519.pep
MTPQCRLCGDLIYTQNPVNIFDENSKMVRQIALVTGLWLTDHSKMPRNMC
SCCLLSLKSAIAFRQACIKTNNRLTIQRRSVEAKDDGCWADPLSDAHEGL
KINDAEVEQEVLYEVSYADNEGLEEDHDLYKKEEEESEVNENKEFEDIAC
EIPFSKEDDEQEQQQEYEDMVDKKTGHDDGEESQECEESQPDEEESQQNE
EDEEESQEDDDELWQNEDGDSDTDADSMSDIEATSRQSALDEDKKPRRKY
TKRSSPKNDDTDFLKPAKKKRKTYISQKVHICDHCGKKFTDKGNFNLHVL
RHSGVKPFECPECGQKEFNRYILNIHIRVKHRGEKPYACQFCDERFVHST
MRSRHENRVHRNKKTPKNFKCNYCDKRYESNYQRAKHEVVHTGERNFHCE
VCKVSFTRNSNLKTHYRSRQHQNKLIAMSAKSEIDSKNK*

BS01519.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17802-PA 439 CG17802-PA 1..439 1..439 2381 100 Plus
CG18764-PA 409 CG18764-PA 1..405 1..431 602 31.7 Plus
CG17806-PA 421 CG17806-PA 1..415 1..436 510 29.8 Plus
M1BP-PA 418 CG9797-PA 13..405 5..439 403 25.8 Plus
CG17803-PB 587 CG17803-PB 85..470 4..415 370 25.9 Plus