Clone Sequence Records
BS01519.3prime Sequence
846 bp (845 high quality bases) assembled on 2005-11-29
> BS01519.3prime
ATGGTCTAGAAAGCTTCGTTATTTATTTTTGGAATCAATTTCGGACTTAG
CACTCATTGCGATCAGCTTATTTTGATGCTGCCTGGAGCGGTAGTGGGTC
TTCAAGTTCGAGTTCCGTGTAAAGGACACTTTGCAGACCTCACAGTGGAA
GTTACGCTCGCCGGTGTGGACCACCTCGTGCTTGGCCCTCTGGTAGTTCG
ACTCGTATCGCTTGTCGCAATAGTTGCACTTGAAGTTCTTTGGTGTTTTC
TTGTTCCGGTGTACCCGGTTTTCGTGGCGCGATCGCATAGTACTGTGCAC
AAAACGCTCGTCGCAGAACTGGCAAGCGTATGGCTTCTCTCCGCGGTGCT
TCACCCGAATGTGAATGTTCAGGATGTACCTGTTGAACTCCTTTTGTCCG
CACTCAGGACACTCGAAGGGCTTGACGCCCGAGTGGCGCAGCACGTGCAG
ATTAAAGTTGCCCTTGTCGGTGAATTTCTTGCCGCAATGGTCACAGATGT
GGACCTTTTGGCTTATGTATGTTTTTCGTTTTTTCTTCGCAGGTTTGAGA
AAGTCGGTGTCGTCGTTTTTGGGAGATGATCTCTTGGTGTATTTTCGACG
AGGCTTCTTATCTTCGTCAAGGGCCGATTGACGCGATGTGGCTTCTATAT
CTGACATAGAATCAGCATCTGTATCGCTGTCGCCGTCCTCGTTCTGCCAA
AGCTCGTCGTCGTCTTCCTGTGACTCCTCTTCGTCCTCCTCATTTTGCTG
ACTTTCCTCCTCATCTGGCTGTGACTCCTCACATTCCTGTGACTCCTCGC
CATCATCATGTCCTGTCTTTTTATCCACCATATCCTCATACTCCTG
BS01519.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17802-PA | 1320 | CG17802-RA | 493..1320 | 846..19 | 4140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:33:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17802-RA | 1706 | CG17802-RA | 574..1401 | 846..19 | 4140 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17804041..17804618 | 269..846 | 2890 | 100 | Plus |
3R | 32079331 | 3R | 17803530..17803656 | 19..145 | 635 | 100 | Plus |
3R | 32079331 | 3R | 17803856..17803978 | 146..268 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:33:11 has no hits.
BS01519.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:45 Download gff for
BS01519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-PA | 493..1320 | 19..846 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:11 Download gff for
BS01519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-PA | 493..1320 | 19..846 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:15:25 Download gff for
BS01519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 574..1401 | 19..846 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:50 Download gff for
BS01519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 574..1401 | 19..846 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:50 Download gff for
BS01519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17803530..17803656 | 19..145 | 100 | <- | Plus |
3R | 17803856..17803978 | 146..268 | 100 | <- | Plus |
3R | 17804041..17804618 | 269..846 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:15:25 Download gff for
BS01519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13629252..13629378 | 19..145 | 100 | <- | Plus |
arm_3R | 13629578..13629700 | 146..268 | 100 | <- | Plus |
arm_3R | 13629763..13630340 | 269..846 | 100 | | Plus |
BS01519.5prime Sequence
806 bp (784 high quality bases) assembled on 2005-11-29
> BS01519.5prime
GAAGTTATCAGTCGACATGACGCCACAATGCCGGTTGTGTGGAGATTTAA
TATACACGCAAAATCCAGTTAACATATTCGATGAGAACAGCAAAATGGTC
AGGCAAATCGCATTGGTCACGGGCCTTTGGCTCACCGACCACTCGAAGAT
GCCCCGGAATATGTGCTCCTGCTGCCTGCTGAGCCTGAAGAGCGCCATTG
CCTTCCGGCAAGCCTGCATCAAGACCAACAATCGACTGACAATCCAGCGC
CGAAGTGTGGAAGCCAAGGATGACGGATGCTGGGCTGATCCGCTGAGCGA
TGCGCACGAGGGGCTGAAGATCAACGATGCGGAAGTGGAGCAGGAGGTGC
TGTACGAGGTGTCCTATGCGGATAATGAAGGACTGGAGGAAGACCACGAC
CTGTACAAGAAGGAGGAGGAAGAAAGCGAGGTTAATGAGAACAAGGAATT
TGAAGATATTGCCTGCGAAATACCCTTCAGTAAGGAGGATGATGAGCAAG
AGCAACAGCAGGAGTATGAGGATATGGTGGATAAAAAGACAGGACATGAT
GATGGCGAGGAGTCACAGGAATGTGAGGAGTCACAGCCAGATGAGGAGGA
AAGTCAGCAAAATGAGGAGGACGAAGAGGAGTCACAGGAAGACGACGACG
AGCTTTGGCAGAACGAGGACGGCGACAGCGATACAGATGCTGATTCTATG
TCAGATATAGAAGCCACATCGCGTCAATCGGCCCTTGACGAAGATAAGAA
GCCTCGTCGAAAATACACCAAGAGATCATCTCCCAAAAACGACGACACCG
ACTTTC
BS01519.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17802-PA | 1320 | CG17802-RA | 1..790 | 17..806 | 3925 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17802-RA | 1706 | CG17802-RA | 82..871 | 17..806 | 3935 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17804321..17804997 | 806..130 | 3370 | 99.9 | Minus |
3R | 32079331 | 3R | 17805055..17805168 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:40:22 has no hits.
BS01519.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:46 Download gff for
BS01519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-PA | 1..790 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:12 Download gff for
BS01519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-PA | 1..790 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:51:28 Download gff for
BS01519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 82..871 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:45:07 Download gff for
BS01519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 82..871 | 17..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:45:07 Download gff for
BS01519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17804321..17804996 | 131..806 | 99 | <- | Minus |
3R | 17805055..17805168 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:51:28 Download gff for
BS01519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13630043..13630718 | 131..806 | 99 | <- | Minus |
arm_3R | 13630777..13630890 | 17..130 | 100 | | Minus |
BS01519.complete Sequence
1354 bp (1354 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634632
> BS01519.complete
GAAGTTATCAGTCGACATGACGCCACAATGCCGGTTGTGTGGAGATTTAA
TATACACGCAAAATCCAGTTAACATATTCGATGAGAACAGCAAAATGGTC
AGGCAAATCGCATTGGTCACGGGCCTTTGGCTCACCGACCACTCGAAGAT
GCCCCGGAATATGTGCTCCTGCTGCCTGCTGAGCCTGAAGAGCGCCATTG
CCTTCCGGCAAGCCTGCATCAAGACCAACAATCGACTGACAATCCAGCGC
CGAAGTGTGGAAGCCAAGGATGACGGATGCTGGGCTGATCCGCTGAGCGA
TGCGCACGAGGGGCTGAAGATCAACGATGCGGAAGTGGAGCAGGAGGTGC
TGTACGAGGTGTCCTATGCGGATAATGAAGGACTGGAGGAAGACCACGAC
CTGTACAAGAAGGAGGAGGAAGAAAGCGAGGTTAATGAGAACAAGGAATT
TGAAGATATTGCCTGCGAAATACCCTTCAGTAAGGAGGATGATGAGCAAG
AGCAACAGCAGGAGTATGAGGATATGGTGGATAAAAAGACAGGACATGAT
GATGGCGAGGAGTCACAGGAATGTGAGGAGTCACAGCCAGATGAGGAGGA
AAGTCAGCAAAATGAGGAGGACGAAGAGGAGTCACAGGAAGACGACGACG
AGCTTTGGCAGAACGAGGACGGCGACAGCGATACAGATGCTGATTCTATG
TCAGATATAGAAGCCACATCGCGTCAATCGGCCCTTGACGAAGATAAGAA
GCCTCGTCGAAAATACACCAAGAGATCATCTCCCAAAAACGACGACACCG
ACTTTCTCAAACCTGCGAAGAAAAAACGAAAAACATACATAAGCCAAAAG
GTCCACATCTGTGACCATTGCGGCAAGAAATTCACCGACAAGGGCAACTT
TAATCTGCACGTGCTGCGCCACTCGGGCGTCAAGCCCTTCGAGTGTCCTG
AGTGCGGACAAAAGGAGTTCAACAGGTACATCCTGAACATTCACATTCGG
GTGAAGCACCGCGGAGAGAAGCCATACGCTTGCCAGTTCTGCGACGAGCG
TTTTGTGCACAGTACTATGCGATCGCGCCACGAAAACCGGGTACACCGGA
ACAAGAAAACACCAAAGAACTTCAAGTGCAACTATTGCGACAAGCGATAC
GAGTCGAACTACCAGAGGGCCAAGCACGAGGTGGTCCACACCGGCGAGCG
TAACTTCCACTGTGAGGTCTGCAAAGTGTCCTTTACACGGAACTCGAACT
TGAAGACCCACTACCGCTCCAGGCAGCATCAAAATAAGCTGATCGCAATG
AGTGCTAAGTCCGAAATTGATTCCAAAAATAAATAACGAAGCTTTCTAGA
CCAT
BS01519.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17802-RA | 1320 | CG17802-PA | 1..1320 | 17..1336 | 6585 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17802-RA | 1706 | CG17802-RA | 82..1401 | 17..1336 | 6585 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17804041..17804997 | 1086..130 | 4770 | 99.9 | Minus |
3R | 32079331 | 3R | 17803530..17803656 | 1336..1210 | 635 | 100 | Minus |
3R | 32079331 | 3R | 17803856..17803978 | 1209..1087 | 615 | 100 | Minus |
3R | 32079331 | 3R | 17805055..17805168 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:47:14 has no hits.
BS01519.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:48 Download gff for
BS01519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 1..1320 | 17..1336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:38 Download gff for
BS01519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 81..1400 | 17..1336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:30 Download gff for
BS01519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 82..1389 | 17..1324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:49 Download gff for
BS01519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 81..1400 | 17..1336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:55 Download gff for
BS01519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 82..1389 | 17..1324 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:55 Download gff for
BS01519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17803856..17803978 | 1087..1209 | 100 | <- | Minus |
3R | 17803542..17803656 | 1210..1324 | 100 | <- | Minus |
3R | 17804041..17804996 | 131..1086 | 99 | <- | Minus |
3R | 17805055..17805168 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:30 Download gff for
BS01519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13630777..13630890 | 17..130 | 100 | | Minus |
arm_3R | 13629264..13629378 | 1210..1324 | 100 | <- | Minus |
arm_3R | 13629578..13629700 | 1087..1209 | 100 | <- | Minus |
arm_3R | 13629763..13630718 | 131..1086 | 99 | <- | Minus |
BS01519.pep Sequence
Translation from 16 to 1335
> BS01519.pep
MTPQCRLCGDLIYTQNPVNIFDENSKMVRQIALVTGLWLTDHSKMPRNMC
SCCLLSLKSAIAFRQACIKTNNRLTIQRRSVEAKDDGCWADPLSDAHEGL
KINDAEVEQEVLYEVSYADNEGLEEDHDLYKKEEEESEVNENKEFEDIAC
EIPFSKEDDEQEQQQEYEDMVDKKTGHDDGEESQECEESQPDEEESQQNE
EDEEESQEDDDELWQNEDGDSDTDADSMSDIEATSRQSALDEDKKPRRKY
TKRSSPKNDDTDFLKPAKKKRKTYISQKVHICDHCGKKFTDKGNFNLHVL
RHSGVKPFECPECGQKEFNRYILNIHIRVKHRGEKPYACQFCDERFVHST
MRSRHENRVHRNKKTPKNFKCNYCDKRYESNYQRAKHEVVHTGERNFHCE
VCKVSFTRNSNLKTHYRSRQHQNKLIAMSAKSEIDSKNK*
BS01519.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17802-PA | 439 | CG17802-PA | 1..439 | 1..439 | 2381 | 100 | Plus |
CG18764-PA | 409 | CG18764-PA | 1..405 | 1..431 | 602 | 31.7 | Plus |
CG17806-PA | 421 | CG17806-PA | 1..415 | 1..436 | 510 | 29.8 | Plus |
M1BP-PA | 418 | CG9797-PA | 13..405 | 5..439 | 403 | 25.8 | Plus |
CG17803-PB | 587 | CG17803-PB | 85..470 | 4..415 | 370 | 25.9 | Plus |