Clone Sequence Records
BS01521.3prime Sequence
935 bp (736 high quality bases) assembled on 2005-11-29
> BS01521.3prime
ATGGTCTAGAAAGCTTCGTCAATAGGTGAAAAGCATCTCGATGGGTTCCG
CCTCGGCACCCTCCGTCGCATTTACGGACGCCTGGAGCTTGTGCGCTCGC
ATATGAGCGGATAGACCTGCCGCCTGGGCATAGGCATTACCGCAGATCTT
GCACTTGAACTTCTTGATGCCCAAATGCAGATGCTTGTGGTGATAGAGCG
CCTTCGGGCGGGAGAAGGCCGAATCACATTTGTCGCACTTGTAGGGCTTC
TCGGTGGAATGCATGGCCTGGTGCTCGTTGAGCAGCGACTTGGAGGCAAA
GCGGCGGGCACAGGTCTGGCACTGGAAGGGTTTCTCGCCCGTATGCGTGC
GCCGGTGGACGATCAACGCCTCCCGGTAGCGGGATCTATAGCCGCACAGC
TCGCACACGTAGTTCCGCTCCTCGCTGTGGACCCGCCGATGCGAGGTGAG
GTTGTGCTGGTTGACAAACGACTTGCCGCAGTTCTCGTGCTCACACTTGA
ATGTCCTGGCGCCGGAGTGACCCTGCACATGGCGAAGAAGGGATCGCGAG
CTTTTGAACACCTTGTCGCATAGCTGGCAGGCGAACTCCGTGTGCTCCTT
GCGACGATGCTGGGCCAATGCTCGGTCCACATCGAAGGTGGCTTTGCAGT
CGACGCACTTGAAGGCCTGCGGAAACGGATGGCTCATCTTTAGGTGGGTG
TTTAGGTATTTCTGCGTCGTGTACCTCCTGTCGCAGTGTGGGCAGTTGTA
GTCCTTTGGTTGGCGCTGCTTCTTAAAAACAGACTGGTGCTCCTCCCCGT
CCTCATCCGGTTGATAGTCTTTGCGATTTTCCACGCCCAACAGAGCCTCC
AGAGCGCACCCCCTCGTGACGGATGCGGAGGGACTGTCATGATCCGGCTG
CCACATCGTATCGATGGTCTCCTCGTCCACGGACT
BS01521.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10959-PA | 1332 | CG10959-RA | 530..1328 | 821..23 | 3995 | 100 | Minus |
CG10959-PA | 1332 | CG10959-RA | 416..484 | 935..867 | 320 | 98.5 | Minus |
CG10959-PA | 1332 | CG10959-RA | 489..526 | 862..825 | 190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:33:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10959-RA | 1836 | CG10959-RA | 531..1448 | 935..18 | 4470 | 99.3 | Minus |
CG10959-RB | 1830 | CG10959-RB | 531..1442 | 935..18 | 4370 | 98.7 | Minus |
CG2129-RA | 2017 | CG2129-RA | 1357..1462 | 218..113 | 200 | 80.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:33:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8149543..8150298 | 773..18 | 3765 | 99.9 | Minus |
X | 23542271 | X | 8149313..8149476 | 935..772 | 700 | 95.1 | Minus |
X | 23542271 | X | 8147195..8147300 | 218..113 | 200 | 79.2 | Minus |
Blast to na_te.dros performed on 2015-01-31 15:33:10 has no hits.
BS01521.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:47 Download gff for
BS01521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-PA | 416..1332 | 19..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:13 Download gff for
BS01521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-PA | 416..1332 | 19..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:27:57 Download gff for
BS01521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-RA | 531..1454 | 12..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:43:19 Download gff for
BS01521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-RA | 531..1454 | 12..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:43:19 Download gff for
BS01521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8149313..8149476 | 772..935 | 96 | -> | Minus |
X | 8149545..8150304 | 12..771 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:27:57 Download gff for
BS01521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8043346..8043509 | 772..935 | 96 | -> | Minus |
arm_X | 8043578..8044337 | 12..771 | 99 | | Minus |
BS01521.5prime Sequence
865 bp (808 high quality bases) assembled on 2005-11-29
> BS01521.5prime
GAAGTTATCAGTCGACATGTTGAGACACTGCCTCGCCAACGTCGACTACG
TCCGCCTGCACGCCCAGCAGCAGTTGCGTCCCAAATGCGGCGAGATCTTC
TACGAACCGGAGGCGAATAGATTCCAACTGGTCTGCCTGCTCTGCGACAT
GAAGCACTTTGGATTCGAGGACTTCGCCCGCCATATCCGTAATGTGCACT
TCGACAAGCAGGGCCGACCGCTCACCAAGACGGTCACGGGACTGGGCAGA
CTAGCACGAGAGGAACAGGAGTTCCAAGGGGTCAGCGCAGAACCATTGGC
TGTGGACAGCTTCAAGAAAGAGTACCTGCCCAACGAGGATGTTCTGTCGG
AGGAGGAGGACGCGGAACAGGAGCTGGGACTGGAACAGGACGAGGGCAAT
CCACTACGCATCATGGTGCTCGGGGGTAAACAGTCCGTGGACGAGGAGAC
CATCGATACGATGTGGCAGCCGGATCATGACAGTTCCTCCGCATCCGTCA
ACGAGGGGTGCGCTCTGGAGGCTCTGTTGGGCGTGGAAAATCCGCAAGAC
TATCAACCGGATGAGGACGGGGAGGAGCACCAGTCTGTTTTTAAGAAGCA
GCGCCAACCAAAGGACTACAACTGCCCACACTGCGACAGGAGGTACACGA
CGCAGAAATACCTAAACACCCACCTAAAGATGAGCCATCCGTTTCCGCAG
GCCTTCAAGTGCGTCGACTGCAAAGCCACCTTCGATGTGGACCGAGCATT
GGCCCAGCATCGTCGCAAGGAGCACACGGAGTTCGCCTGCCAGCTATGCG
ACAAGGTGTTTCAAAGCTCGCGATCCCTTCTTTCGCATGTGCAGGGTCAC
TCCGGGCGCAGGACA
BS01521.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10959-PA | 1332 | CG10959-RA | 1..816 | 17..832 | 4030 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:17:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10959-RA | 1836 | CG10959-RA | 116..964 | 17..865 | 4125 | 99.3 | Plus |
CG10959-RB | 1830 | CG10959-RB | 116..958 | 17..865 | 4025 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8148898..8149476 | 17..595 | 2895 | 100 | Plus |
X | 23542271 | X | 8149543..8149814 | 594..865 | 1240 | 97.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:17:06 has no hits.
BS01521.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:48 Download gff for
BS01521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-PA | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:14 Download gff for
BS01521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-PA | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:52 Download gff for
BS01521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-RA | 108..963 | 7..864 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:15:00 Download gff for
BS01521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-RA | 108..963 | 7..864 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:15:00 Download gff for
BS01521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8148890..8149476 | 7..595 | 99 | -> | Plus |
X | 8149545..8149813 | 596..864 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:52 Download gff for
BS01521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8042923..8043509 | 7..595 | 99 | -> | Plus |
arm_X | 8043578..8043846 | 596..864 | 97 | | Plus |
BS01521.complete Sequence
1366 bp assembled on 2009-02-12
> BS01521.complete
GAAGTTATCAGTCGACATGTTGAGACACTGCCTCGCCAACGTCGACTACG
TCCGCCTGCACGCCCAGCAGCAGTTGCGTCCCAAATGCGGCGAGATCTTC
TACGAACCGGAGGCGAATAGATTCCAACTGGTCTGCCTGCTCTGCGACAT
GAAGCACTTTGGATTCGAGGACTTCGCCCGCCATATCCGTAATGTGCACT
TCGACAAGCAGGGCCGACCGCTCACCAAGACGGTCACGGGACTGGGCAGA
CTAGCACGAGAGGAACAGGAGTTCCAAGGGGTCAGCGCAGAACCATTGGC
TGTGGACAGCTTCAAGAAAGAGTACCTGCCCAACGAGGATGTTCTGTCGG
AGGAGGAGGACGCGGAACAGGAGCTGGGACTGGAACAGGACGAGGGCAAT
CCACTACGCATCATGGTGCTCGGGGGTAAACAGTCCGTGGACGAGGAGAC
CATCGATACGATGTGGCAGCCGGATCATGACAGTTCCTCCGCATCCGTCA
ACGAGGGGTGCGCTCTGGAGGCTCTGTTGGGCGTGGAAAATCCGCAAGAC
TATCAACCGGATGAGGACGGGGAGGAGCACCAGTCTGTTTTTAAGAAGCA
GCGCCAACCAAAGGACTACAACTGCCCACACTGCGACAGGAGGTACACGA
CGCAGAAATACCTAAACACCCACCTAAAGATGAGCCATCCGTTTCCGCAG
GCCTTCAAGTGCGTCGACTGCAAAGCCACCTTCGATGTGGACCGAGCATT
GGCCCAGCATCGTCGCAAGGAGCACACGGAGTTCGCCTGCCAGCTATGCG
ACAAGGTGTTCAAAAGCTCGCGATCCCTTCTTCGCCATGTGCAGGGTCAC
TCCGGCGCCAGGACATTCAAGTGTGAGCACGAGAACTGCGGCAAGTCGTT
TGTCAACCAGCACAACCTCACCTCGCATCGGCGGGTCCACAGCGAGGAGC
GGAACTACGTGTGCGAGCTGTGCGGCTATAGATCCCGCTACCGGGAGGCG
TTGATCGTCCACCGGCGCACGCATACGGGCGAGAAACCCTTCCAGTGCCA
GACCTGTGCCCGCCGCTTTGCCTCCAAGTCGCTGCTCAACGAGCACCAGG
CCATGCATTCCACCGAGAAGCCCTACAAGTGCGACAAATGTGATTCGGCC
TTCTCCCGCCCGAAGGCGCTCTATCACCACAAGCATCTGCATTTGGGCAT
CAAGAAGTTCAAGTGCAAGATCTGCGGTAATGCCTATGCCCAGGCGGCAG
GTCTATCCGCTCATATGCGAGCGCACAAGCTCCAGGCGTCCGTAAATGCG
ACGGAGGGTGCCGAGGCGGAACCCATCGAGATGCTTTTCACCTATTGACG
AAGCTTTCTAGACCAT
BS01521.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:19:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10959-RA | 1332 | CG10959-PA | 1..1332 | 17..1348 | 6645 | 99.9 | Plus |
CG10959-RB | 1326 | CG10959-PB | 1..1326 | 17..1348 | 6520 | 99.5 | Plus |
CG2129-RA | 1398 | CG2129-PA | 1247..1352 | 1149..1254 | 200 | 79.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10959-RA | 1836 | CG10959-RA | 116..1448 | 17..1349 | 6650 | 99.9 | Plus |
CG10959-RB | 1830 | CG10959-RB | 116..1442 | 17..1349 | 6525 | 99.5 | Plus |
CG2129-RA | 2017 | CG2129-RA | 1357..1462 | 1149..1254 | 200 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8149543..8150298 | 594..1349 | 3765 | 99.9 | Plus |
X | 23542271 | X | 8148898..8149476 | 17..595 | 2895 | 100 | Plus |
X | 23542271 | X | 8147195..8147300 | 1149..1254 | 200 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:19:47 has no hits.
BS01521.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:26 Download gff for
BS01521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-RA | 34..1361 | 22..1350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:50 Download gff for
BS01521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-RA | 121..1448 | 22..1350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:12 Download gff for
BS01521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10959-RA | 121..1448 | 22..1350 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:12 Download gff for
BS01521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8148903..8149476 | 22..595 | 100 | -> | Plus |
X | 8149545..8150298 | 596..1350 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:50 Download gff for
BS01521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8042936..8043509 | 22..595 | 100 | -> | Plus |
arm_X | 8043578..8044331 | 596..1350 | 99 | | Plus |
BS01521.pep Sequence
Translation from 16 to 1347
> BS01521.pep
MLRHCLANVDYVRLHAQQQLRPKCGEIFYEPEANRFQLVCLLCDMKHFGF
EDFARHIRNVHFDKQGRPLTKTVTGLGRLAREEQEFQGVSAEPLAVDSFK
KEYLPNEDVLSEEEDAEQELGLEQDEGNPLRIMVLGGKQSVDEETIDTMW
QPDHDSSSASVNEGCALEALLGVENPQDYQPDEDGEEHQSVFKKQRQPKD
YNCPHCDRRYTTQKYLNTHLKMSHPFPQAFKCVDCKATFDVDRALAQHRR
KEHTEFACQLCDKVFKSSRSLLRHVQGHSGARTFKCEHENCGKSFVNQHN
LTSHRRVHSEERNYVCELCGYRSRYREALIVHRRTHTGEKPFQCQTCARR
FASKSLLNEHQAMHSTEKPYKCDKCDSAFSRPKALYHHKHLHLGIKKFKC
KICGNAYAQAAGLSAHMRAHKLQASVNATEGAEAEPIEMLFTY*
BS01521.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:58:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10959-PA | 443 | CG10959-PA | 1..443 | 1..443 | 2408 | 100 | Plus |
CG10959-PB | 441 | CG10959-PB | 1..441 | 1..443 | 2385 | 99.5 | Plus |
CG2129-PA | 465 | CG2129-PA | 17..459 | 23..421 | 668 | 34.2 | Plus |
CG18262-PA | 469 | CG18262-PA | 18..411 | 23..420 | 518 | 31.2 | Plus |
Meics-PB | 571 | CG8474-PB | 170..478 | 89..420 | 406 | 31.5 | Plus |
CG2129-PA | 465 | CG2129-PA | 296..462 | 203..368 | 212 | 30.4 | Plus |