Clone Sequence Records
BS01525.3prime Sequence
703 bp (635 high quality bases) assembled on 2005-11-29
> BS01525.3prime
ATGGTCTAGAAAGCTTCGCTACAGCGAGTGTTCGTTGGTGTTGAGGAAGC
TGCGGCAGACGCGGCTCACTTCGGGATTGGCGTGGTTCATTAGCTGCATG
TAGATCTGCTTGTGTAGCTGCAGCTCGTTGGTCATCTCACCAAGCTGCCG
AATGAGGGCGTCCTTCTCCTTGAGCAGGCTCTTCACGCGCTCCTCCACCT
CGCGGGAGCGCACCTTAGCCTTCTCCCGGCTCTTGCGCACCGCTATGTTG
TTCCGCTCCCGCCGCCTGCGGTACTCATCCGTGCCCTTGTCCACATGCTT
GTTGCTGTGCTTGCGGTGCTGCTGCTGTTGCTGGTGCTGCTGATGCTGCT
GCTGCGCGTGCAGCTTGCTGTGCTGCTTGAGCAGATTGTGTGCTCCTGCT
GCGGCCGCCAGGTGGGGCAGGTTGTGGTGCGCCAGGACGTTGGCCGTCGT
CAGGTTGGTGAACTGGCTGCCGTTGCTGCTGCCCGTGCTGCCGTTGCTCC
CGTTGCTGCTGGGCGTGGTGTTGCCTCCGTTGAGTGGGTTTCCGCCCCCG
GTCAAGCCATTCGCCCCCGATCCGTAGCCGTTGTACAGGCCTGCTCCATT
GCCCATGAAGGCGGCCTGCTGGCTAGCCGCCTCCTGCAGGTGCCGCCTGT
ACTCGGGGTCGATGGGCTCCTCCTTGATCGTGCTGGAGTCGGAGCCCCAC
GAG
BS01525.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4354-PA | 1350 | slbo-RA | 672..1350 | 697..19 | 3395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slbo-RB | 2581 | CG4354-RB | 1004..1683 | 697..18 | 3400 | 100 | Minus |
| slbo-RA | 2786 | CG4354-RA | 1209..1888 | 697..18 | 3400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:34:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24332420..24333099 | 18..697 | 3400 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 15:35:02 has no hits.
BS01525.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:52 Download gff for
BS01525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slbo-PA | 666..1350 | 19..703 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:19 Download gff for
BS01525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4354-PA | 666..1350 | 19..703 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:28:12 Download gff for
BS01525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slbo-RA | 1203..1892 | 12..703 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:43:34 Download gff for
BS01525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slbo-RA | 1203..1892 | 12..703 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:43:34 Download gff for
BS01525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24332416..24333103 | 12..703 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:28:12 Download gff for
BS01525.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20219939..20220626 | 12..703 | 99 | | Plus |
BS01525.5prime Sequence
767 bp (684 high quality bases) assembled on 2005-11-29
> BS01525.5prime
GAAGTTATCAGTCGACATGCTGAACATGGAGTCGCCGCAGATGTACGCCG
ATGCCGTTCAGACATTGGCCCAGCTGGACCTCAAGAAGGAGCCTCCCCTG
CAGCAGGCCACCATTGGCCAGATCACACTGACGGCCATGTCCACGGCGCA
GCAGCAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGC
AACAACAGCAGCAGCAGCAACCCCAGCAGCAGACTACCGATGCGAACAAC
AACACGTCGCAGGACGCGGCACTCCTGGTCAAGCAGCACGCCATGCACCA
GATGCAACAGGTCGCCGCATTGGGCAGCAACAACAACCTGCTGCAGAAGC
AGATGCTGCAGCAGTACTCCACTCAGACGGACCTGGACGAGCTGACCACC
CAGGAGATCACGCTCGACCTGCAGCACCTGATAGACGACCAGTTCAGGGA
CACGGAAACGCTGGGCATCTTCAGCGACATGGTGACCAGTCCGGGCGGAC
TCTCGGCCACCCTGCCGCCGAGCGGAATGGTCTCGGCGGCGGCGAAGGTC
CTGCAGCAGCAGACCCTGCGGAACCAGCACGGCTACGGGGGCAGGGGAGG
CGGTGGCGGAGCAGGAGGCGCCCTGGCCTACATGCCGCAGCCCGTGCACG
CCACCTACAACAATTCCAGCGACGAGAACAGCTCCGTGGGCTCCGACTCC
AGCACGATCAAGGAGGAGCCCATCGACCCCGAGTACAGGCGGCACCTGCA
GGAGGCGGCTAGCCAGC
BS01525.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4354-PA | 1350 | slbo-RA | 1..751 | 17..767 | 3755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:41:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slbo-RB | 2581 | CG4354-RB | 333..1083 | 17..767 | 3755 | 100 | Plus |
| slbo-RA | 2786 | CG4354-RA | 538..1288 | 17..767 | 3755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:41:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24333020..24333770 | 767..17 | 3755 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 02:41:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 3109..3195 | 673..759 | 111 | 58.6 | Plus |
BS01525.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:53 Download gff for
BS01525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slbo-PA | 1..751 | 17..767 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:20 Download gff for
BS01525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4354-PA | 1..751 | 17..767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:51:43 Download gff for
BS01525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slbo-RA | 538..1288 | 17..767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:00:02 Download gff for
BS01525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slbo-RA | 538..1288 | 17..767 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:00:02 Download gff for
BS01525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24333020..24333770 | 17..767 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:51:43 Download gff for
BS01525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20220543..20221293 | 17..767 | 100 | | Minus |
BS01525.complete Sequence
1384 bp (1384 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ634633
> BS01525.complete
GAAGTTATCAGTCGACATGCTGAACATGGAGTCGCCGCAGATGTACGCCG
ATGCCGTTCAGACATTGGCCCAGCTGGACCTCAAGAAGGAGCCTCCCCTG
CAGCAGGCCACCATTGGCCAGATCACACTGACGGCCATGTCCACGGCGCA
GCAGCAGCAGCAACAACAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGC
AACAACAGCAGCAGCAGCAACCCCAGCAGCAGACTACCGATGCGAACAAC
AACACGTCGCAGGACGCGGCACTCCTGGTCAAGCAGCACGCCATGCACCA
GATGCAACAGGTCGCCGCATTGGGCAGCAACAACAACCTGCTGCAGAAGC
AGATGCTGCAGCAGTACTCCACTCAGACGGACCTGGACGAGCTGACCACC
CAGGAGATCACGCTCGACCTGCAGCACCTGATAGACGACCAGTTCAGGGA
CACGGAAACGCTGGGCATCTTCAGCGACATGGTGACCAGTCCGGGCGGAC
TCTCGGCCACCCTGCCGCCGAGCGGAATGGTCTCGGCGGCGGCGAAGGTC
CTGCAGCAGCAGACCCTGCGGAACCAGCACGGCTACGGGGGCAGGGGAGG
CGGTGGCGGAGCAGGAGGCGCCCTGGCCTACATGCCGCAGCCCGTGCACG
CCACCTACAACAATTCCAGCGACGAGAACAGCTCCGTGGGCTCCGACTCC
AGCACGATCAAGGAGGAGCCCATCGACCCCGAGTACAGGCGGCACCTGCA
GGAGGCGGCTAGCCAGCAGGCCGCCTTCATGGGCAATGGAGCAGGCCTGT
ACAACGGCTACGGATCGGGGGCGAATGGCTTGACCGGGGGCGGAAACCCA
CTCAACGGAGGCAACACCACGCCCAGCAGCAACGGGAGCAACGGCAGCAC
GGGCAGCAGCAACGGCAGCCAGTTCACCAACCTGACGACGGCCAACGTCC
TGGCGCACCACAACCTGCCCCACCTGGCGGCCGCAGCAGGAGCACACAAT
CTGCTCAAGCAGCACAGCAAGCTGCACGCGCAGCAGCAGCATCAGCAGCA
CCAGCAACAGCAGCAGCACCGCAAGCACAGCAACAAGCATGTGGACAAGG
GCACGGATGAGTACCGCAGGCGGCGGGAGCGGAACAACATAGCGGTGCGC
AAGAGCCGGGAGAAGGCTAAGGTGCGCTCCCGCGAGGTGGAGGAGCGCGT
GAAGAGCCTGCTCAAGGAGAAGGACGCCCTCATTCGGCAGCTTGGTGAGA
TGACCAACGAGCTGCAGCTACACAAGCAGATCTACATGCAGCTAATGAAC
CACGCCAATCCCGAAGTGAGCCGCGTCTGCCGCAGCTTCCTCAACACCAA
CGAACACTCGCTGTAGCGAAGCTTTCTAGACCAT
BS01525.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:47:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slbo-RB | 1350 | CG4354-PB | 1..1350 | 17..1366 | 6750 | 100 | Plus |
| slbo-RA | 1350 | CG4354-PA | 1..1350 | 17..1366 | 6750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:47:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slbo-RB | 2581 | CG4354-RB | 333..1683 | 17..1367 | 6755 | 100 | Plus |
| slbo-RA | 2786 | CG4354-RA | 538..1888 | 17..1367 | 6755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:47:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24332420..24333770 | 1367..17 | 6755 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 19:47:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 3109..3195 | 673..759 | 111 | 58.6 | Plus |
BS01525.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:14 Download gff for
BS01525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slbo-RA | 1..1350 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:20 Download gff for
BS01525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slbo-RA | 537..1891 | 17..1373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:23 Download gff for
BS01525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slbo-RA | 538..1888 | 17..1368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:14 Download gff for
BS01525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slbo-RA | 537..1891 | 17..1373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:29 Download gff for
BS01525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slbo-RA | 538..1888 | 17..1368 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:29 Download gff for
BS01525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24332418..24333770 | 17..1368 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:23 Download gff for
BS01525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20219941..20221293 | 17..1368 | 99 | | Minus |
BS01525.pep Sequence
Translation from 16 to 1365
> BS01525.pep
MLNMESPQMYADAVQTLAQLDLKKEPPLQQATIGQITLTAMSTAQQQQQQ
QQQQQQQQQQQQQQQQQQPQQQTTDANNNTSQDAALLVKQHAMHQMQQVA
ALGSNNNLLQKQMLQQYSTQTDLDELTTQEITLDLQHLIDDQFRDTETLG
IFSDMVTSPGGLSATLPPSGMVSAAAKVLQQQTLRNQHGYGGRGGGGGAG
GALAYMPQPVHATYNNSSDENSSVGSDSSTIKEEPIDPEYRRHLQEAASQ
QAAFMGNGAGLYNGYGSGANGLTGGGNPLNGGNTTPSSNGSNGSTGSSNG
SQFTNLTTANVLAHHNLPHLAAAAGAHNLLKQHSKLHAQQQHQQHQQQQQ
HRKHSNKHVDKGTDEYRRRRERNNIAVRKSREKAKVRSREVEERVKSLLK
EKDALIRQLGEMTNELQLHKQIYMQLMNHANPEVSRVCRSFLNTNEHSL*
BS01525.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slbo-PB | 449 | CG4354-PB | 1..449 | 1..449 | 2308 | 100 | Plus |
| slbo-PA | 449 | CG4354-PA | 1..449 | 1..449 | 2308 | 100 | Plus |
| CG43347-PD | 2652 | CG43347-PD | 1497..1890 | 23..357 | 185 | 26 | Plus |
| CG43347-PB | 2666 | CG43347-PB | 1511..1904 | 23..357 | 185 | 26 | Plus |
| CG43347-PC | 2684 | CG43347-PC | 1529..1922 | 23..357 | 185 | 26 | Plus |
