Clone BS01528 Report

Search the DGRC for BS01528

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:15
Well:28
Vector:pDNR-Dual
Associated Gene/Transcriptgsb-n-RA
Protein status:BS01528.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01528.3prime Sequence

836 bp (752 high quality bases) assembled on 2005-11-29

> BS01528.3prime
ATGGTCTAGAAAGCTTCGTCATGACCAGTACTTGGCCTGACCCTGCGTCG
GCAGGGGGTGGCTGTAGGCGGAGGCCGGGTTCCCGTGAGCCGCTGCAGCG
GCATAGTCATTGAGCTGGTGCTGGGCTACGTGGGCATTGTAGTTGGCGGC
GGCGTGGTAGGCGGCCTGTGACCAGTTTGAGGGAGCCTCCAGCTTCGAGT
AGTTGTCGCTGAGGTGTAGTGAGGGCGAGATCTTTGAGACACTGTCGGCG
GTGAGCTTTGAGAAGTCGTCAATGGTCAGCTTGGAATAGTCTTGATGGTA
ATAGTTTTGACTACCAAAGTGTCCCGGCTGAGCAAAGCCCCCGGGAAATC
CGTGTTGAGCCGCACTTTGGACCAAATCGTAGCCACCCATCTGTGTGTGA
TGGTGTGCCGCTGCAGCAGCCGTTGCTGCGCTGTGGTGGGAGCTTGGTGC
GTGTGCGGCGTGGTGAACTCCGTCGTTCATCCCAGCTCCAGTGGCAGTGG
TTCCCGGCGCAGGACTGTAGCCCGCCATCGAACCAACTCCCAAAGGGCCG
TAGCCAAGTGGTGCTGTCGCCCCACTGAGCCCAACACCCACGCCCACATT
AGAGCTTCCACTGTTCATGGGCGAAAGCCCGGAGTTTGAGCCGCCAGAGT
GCTTGCGAAGGCGTGCCCTGCGGTTGGAGAACCATACCTGGATACGGGCT
TCGGTGAGGGCCGTGGTCTGAGCCAGCTCTTCCCGGGTGTAGACGTCCGG
GTATTGGGTGCGGGAAAAGGCTCGCTCGAGTGCCTCTAGCTGCTCGGCGG
TGAAGGTGGTGCGGGAGCGACGCTGCTTGCGTTTCA

BS01528.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2692-PA 1350 gsb-n-RA 533..1350 836..19 4090 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
gsb-n-RA 2237 CG2692-RA 856..1673 836..19 4090 100 Minus
gsb-RA 1649 CG3388-RA 746..912 816..650 220 75.4 Minus
prd-RB 2459 CG6716-RB 924..1110 836..650 185 73.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25041333..25041878 291..836 2730 100 Plus
2R 25286936 2R 25040947..25041220 19..292 1370 100 Plus
2R 25286936 2R 25063740..25063906 816..650 220 75.4 Minus
2L 23513712 2L 12084344..12084530 650..836 185 73.3 Plus
Blast to na_te.dros performed on 2015-02-10 23:24:04 has no hits.

BS01528.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:56 Download gff for BS01528.3prime
Subject Subject Range Query Range Percent Splice Strand
gsb-n-PA 534..1350 19..835 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:24 Download gff for BS01528.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2692-PA 534..1350 19..835 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:41:22 Download gff for BS01528.3prime
Subject Subject Range Query Range Percent Splice Strand
gsb-n-RA 857..1673 19..835 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:43:40 Download gff for BS01528.3prime
Subject Subject Range Query Range Percent Splice Strand
gsb-n-RA 857..1673 19..835 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:43:40 Download gff for BS01528.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 25040947..25041218 19..290 100 <- Plus
2R 25041333..25041877 291..835 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:41:22 Download gff for BS01528.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20928470..20928741 19..290 100 <- Plus
arm_2R 20928856..20929400 291..835 100   Plus

BS01528.5prime Sequence

745 bp (712 high quality bases) assembled on 2005-11-29

> BS01528.5prime
GAAGTTATCAGTCGACATGGATATGTCCAGCGCGAACTCGTTGCGGCCCC
TTTTCGCAGGGTATCCCTTTCAAGGACAAGGCCGGGTAAATCAGCTTGGG
GGCGTCTTTATCAATGGACGTCCGTTGCCCAATCACATTCGACTGAAGAT
CGTGGAAATGGCGGCCAGTGGAGTGCGGCCTTGTGTAATATCGCGCCAGC
TCCGCGTGTCTCACGGCTGCGTATCGAAGATTCTGAACCGATACCAGGAG
ACGGGTTCTATTAGACCGGGCGTAATAGGTGGATCTAAGCCCAAGGTGAC
CTCTCCCGAAATTGAAACGCGGATCGATGAGCTGCGAAAGGAAAACCCCA
GCATATTCAGCTGGGAAATACGCGAAAAGCTGATAAAGGAGGGCTTTGCG
GATCCACCATCAACATCGTCGATCAGTCGCTTATTGCGGGGAAGCGATCG
CGGCAGCGAAGATGGTCGGAAGGACTATACCATAAATGGAATTCTTGGAG
GGCGAGACTCAGATATAAGTGACACGGAATCGGAGCCTGGGATTCCGCTG
AAACGCAAGCAGCGTCGCTCCCGCACCACCTTCACCGCCGAGCAGCTAGA
GGCACTCGAGCGAGCCTTTTCCCGCACCCAATACCCGGACGTCTACACCC
GGGAAGAGCTGGCTCAGACCACGGCCCTCACCGAAGCCCGTATCCAGGTA
TGGTTCTCCAACCGCAGGGCACGCCTTCGCAAGCACTCTGGCGGC

BS01528.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG2692-PA 1350 gsb-n-RA 1..729 17..745 3645 100 Plus
CG6716-PA 1773 prd-RA 151..218 215..282 140 88.2 Plus
CG6716-PB 1842 prd-RB 220..287 215..282 140 88.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
gsb-n-RA 2237 CG2692-RA 323..1052 16..745 3650 100 Plus
gsb-RA 1649 CG3388-RA 227..447 62..282 460 81.6 Plus
prd-RB 2459 CG6716-RB 392..594 89..291 370 78.8 Plus
gsb-RA 1649 CG3388-RA 746..912 569..735 220 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25051309..25051625 389..73 1585 100 Minus
2R 25286936 2R 25041682..25041928 745..499 1235 100 Minus
2R 25286936 2R 25048046..25048160 501..387 575 100 Minus
2R 25286936 2R 25063228..25063441 69..282 410 79.4 Plus
2L 23513712 2L 12084860..12085062 291..89 370 78.8 Minus
2R 25286936 2R 25051950..25052009 75..16 300 100 Minus
2R 25286936 2R 25063740..25063906 569..735 220 75.4 Plus
2L 23513712 2L 12084344..12084530 735..549 185 73.3 Minus
Blast to na_te.dros performed on 2015-02-12 07:10:43 has no hits.

BS01528.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:57 Download gff for BS01528.5prime
Subject Subject Range Query Range Percent Splice Strand
gsb-n-PA 1..729 17..745 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:25 Download gff for BS01528.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2692-PA 1..729 17..745 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:01:45 Download gff for BS01528.5prime
Subject Subject Range Query Range Percent Splice Strand
gsb-n-RA 310..1052 5..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:47 Download gff for BS01528.5prime
Subject Subject Range Query Range Percent Splice Strand
gsb-n-RA 310..1052 5..745 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:47 Download gff for BS01528.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 25041682..25041926 501..745 100 <- Minus
2R 25048047..25048158 389..500 100 <- Minus
2R 25051310..25051623 75..388 100 <- Minus
2R 25051951..25052021 5..74 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:01:45 Download gff for BS01528.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20929205..20929449 501..745 100 <- Minus
arm_2R 20935570..20935681 389..500 100 <- Minus
arm_2R 20938833..20939146 75..388 100 <- Minus
arm_2R 20939474..20939544 5..74 93   Minus

BS01528.complete Sequence

1384 bp (1384 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634634

> BS01528.complete
GAAGTTATCAGTCGACATGGATATGTCCAGCGCGAACTCGTTGCGGCCCC
TTTTCGCAGGGTATCCCTTTCAAGGACAAGGCCGGGTAAATCAGCTTGGG
GGCGTCTTTATCAATGGACGTCCGTTGCCCAATCACATTCGACTGAAGAT
CGTGGAAATGGCGGCCAGTGGAGTGCGGCCTTGTGTAATATCGCGCCAGC
TCCGCGTGTCTCACGGCTGCGTATCGAAGATTCTGAACCGATACCAGGAG
ACGGGTTCTATTAGACCGGGCGTAATAGGTGGATCTAAGCCCAAGGTGAC
CTCTCCCGAAATTGAAACGCGGATCGATGAGCTGCGAAAGGAAAACCCCA
GCATATTCAGCTGGGAAATACGCGAAAAGCTGATAAAGGAGGGCTTTGCG
GATCCACCATCAACATCGTCGATCAGTCGCTTATTGCGGGGAAGCGATCG
CGGCAGCGAAGATGGTCGGAAGGACTATACCATAAATGGAATTCTTGGAG
GGCGAGACTCAGATATAAGTGACACGGAATCGGAGCCTGGGATTCCGCTG
AAACGCAAGCAGCGTCGCTCCCGCACCACCTTCACCGCCGAGCAGCTAGA
GGCACTCGAGCGAGCCTTTTCCCGCACCCAATACCCGGACGTCTACACCC
GGGAAGAGCTGGCTCAGACCACGGCCCTCACCGAAGCCCGTATCCAGGTA
TGGTTCTCCAACCGCAGGGCACGCCTTCGCAAGCACTCTGGCGGCTCAAA
CTCCGGGCTTTCGCCCATGAACAGTGGAAGCTCTAATGTGGGCGTGGGTG
TTGGGCTCAGTGGGGCGACAGCACCACTTGGCTACGGCCCTTTGGGAGTT
GGTTCGATGGCGGGCTACAGTCCTGCGCCGGGAACCACTGCCACTGGAGC
TGGGATGAACGACGGAGTTCACCACGCCGCACACGCACCAAGCTCCCACC
ACAGCGCAGCAACGGCTGCTGCAGCGGCACACCATCACACACAGATGGGT
GGCTACGATTTGGTCCAAAGTGCGGCTCAACACGGATTTCCCGGGGGCTT
TGCTCAGCCGGGACACTTTGGTAGTCAAAACTATTACCATCAAGACTATT
CCAAGCTGACCATTGACGACTTCTCAAAGCTCACCGCCGACAGTGTCTCA
AAGATCTCGCCCTCACTACACCTCAGCGACAACTACTCGAAGCTGGAGGC
TCCCTCAAACTGGTCACAGGCCGCCTACCACGCCGCCGCCAACTACAATG
CCCACGTAGCCCAGCACCAGCTCAATGACTATGCCGCTGCAGCGGCTCAC
GGGAACCCGGCCTCCGCCTACAGCCACCCCCTGCCGACGCAGGGTCAGGC
CAAGTACTGGTCATGACGAAGCTTTCTAGACCAT

BS01528.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
gsb-n-RA 1350 CG2692-PA 1..1350 17..1366 6750 100 Plus
gsb-RA 1284 CG3388-PA 43..263 62..282 460 80.5 Plus
prd-RB 1842 CG6716-PB 94..296 89..291 370 78.8 Plus
gsb-RA 1284 CG3388-PA 562..728 569..735 220 75.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
gsb-n-RA 2237 CG2692-RA 323..1673 16..1366 6755 100 Plus
gsb-RA 1649 CG3388-RA 227..447 62..282 460 80.5 Plus
prd-RB 2459 CG6716-RB 392..594 89..291 370 78.8 Plus
gsb-RA 1649 CG3388-RA 746..912 569..735 220 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25041333..25041928 1094..499 2980 100 Minus
2R 25286936 2R 25051309..25051625 389..73 1585 100 Minus
2R 25286936 2R 25040947..25041220 1366..1093 1370 100 Minus
2R 25286936 2R 25048046..25048160 501..387 575 100 Minus
2R 25286936 2R 25063228..25063441 69..282 410 79.4 Plus
2L 23513712 2L 12084860..12085062 291..89 370 78.8 Minus
2R 25286936 2R 25051950..25052009 75..16 300 100 Minus
2R 25286936 2R 25063740..25063906 569..735 220 75.4 Plus
2L 23513712 2L 12084344..12084530 735..549 185 73.3 Minus
Blast to na_te.dros performed on 2014-11-28 07:51:30 has no hits.

BS01528.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:49 Download gff for BS01528.complete
Subject Subject Range Query Range Percent Splice Strand
gsb-n-RA 1..1350 17..1366 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:22 Download gff for BS01528.complete
Subject Subject Range Query Range Percent Splice Strand
gsb-n-RA 320..1669 17..1368 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:25 Download gff for BS01528.complete
Subject Subject Range Query Range Percent Splice Strand
gsb-n-RA 324..1673 17..1368 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:50 Download gff for BS01528.complete
Subject Subject Range Query Range Percent Splice Strand
gsb-n-RA 306..1669 5..1366 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:05:22 Download gff for BS01528.complete
Subject Subject Range Query Range Percent Splice Strand
gsb-n-RA 324..1673 17..1368 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:05:22 Download gff for BS01528.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25040945..25041218 1095..1368 99 <- Minus
2R 25041333..25041926 501..1094 100 <- Minus
2R 25048047..25048158 389..500 100 <- Minus
2R 25051310..25051623 75..388 100 <- Minus
2R 25051951..25052008 17..74 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:25 Download gff for BS01528.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20935570..20935681 389..500 100 <- Minus
arm_2R 20928468..20928741 1095..1368 99 <- Minus
arm_2R 20928856..20929449 501..1094 100 <- Minus
arm_2R 20938833..20939146 75..388 100 <- Minus
arm_2R 20939474..20939531 17..74 100   Minus

BS01528.pep Sequence

Translation from 16 to 1365

> BS01528.pep
MDMSSANSLRPLFAGYPFQGQGRVNQLGGVFINGRPLPNHIRLKIVEMAA
SGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPKVTSPEIE
TRIDELRKENPSIFSWEIREKLIKEGFADPPSTSSISRLLRGSDRGSEDG
RKDYTINGILGGRDSDISDTESEPGIPLKRKQRRSRTTFTAEQLEALERA
FSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSGGSNSGLSP
MNSGSSNVGVGVGLSGATAPLGYGPLGVGSMAGYSPAPGTTATGAGMNDG
VHHAAHAPSSHHSAATAAAAAHHHTQMGGYDLVQSAAQHGFPGGFAQPGH
FGSQNYYHQDYSKLTIDDFSKLTADSVSKISPSLHLSDNYSKLEAPSNWS
QAAYHAAANYNAHVAQHQLNDYAAAAAHGNPASAYSHPLPTQGQAKYWS*

BS01528.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
gsb-n-PA 449 CG2692-PA 1..449 1..449 2351 100 Plus
gsb-PA 427 CG3388-PA 4..328 5..310 892 58.3 Plus
prd-PB 613 CG6716-PB 12..360 10..324 860 57 Plus
prd-PA 590 CG6716-PA 4..337 20..324 850 58 Plus
Poxm-PC 370 CG9610-PC 11..133 22..141 428 66.7 Plus