Clone Sequence Records
BS01528.3prime Sequence
836 bp (752 high quality bases) assembled on 2005-11-29
> BS01528.3prime
ATGGTCTAGAAAGCTTCGTCATGACCAGTACTTGGCCTGACCCTGCGTCG
GCAGGGGGTGGCTGTAGGCGGAGGCCGGGTTCCCGTGAGCCGCTGCAGCG
GCATAGTCATTGAGCTGGTGCTGGGCTACGTGGGCATTGTAGTTGGCGGC
GGCGTGGTAGGCGGCCTGTGACCAGTTTGAGGGAGCCTCCAGCTTCGAGT
AGTTGTCGCTGAGGTGTAGTGAGGGCGAGATCTTTGAGACACTGTCGGCG
GTGAGCTTTGAGAAGTCGTCAATGGTCAGCTTGGAATAGTCTTGATGGTA
ATAGTTTTGACTACCAAAGTGTCCCGGCTGAGCAAAGCCCCCGGGAAATC
CGTGTTGAGCCGCACTTTGGACCAAATCGTAGCCACCCATCTGTGTGTGA
TGGTGTGCCGCTGCAGCAGCCGTTGCTGCGCTGTGGTGGGAGCTTGGTGC
GTGTGCGGCGTGGTGAACTCCGTCGTTCATCCCAGCTCCAGTGGCAGTGG
TTCCCGGCGCAGGACTGTAGCCCGCCATCGAACCAACTCCCAAAGGGCCG
TAGCCAAGTGGTGCTGTCGCCCCACTGAGCCCAACACCCACGCCCACATT
AGAGCTTCCACTGTTCATGGGCGAAAGCCCGGAGTTTGAGCCGCCAGAGT
GCTTGCGAAGGCGTGCCCTGCGGTTGGAGAACCATACCTGGATACGGGCT
TCGGTGAGGGCCGTGGTCTGAGCCAGCTCTTCCCGGGTGTAGACGTCCGG
GTATTGGGTGCGGGAAAAGGCTCGCTCGAGTGCCTCTAGCTGCTCGGCGG
TGAAGGTGGTGCGGGAGCGACGCTGCTTGCGTTTCA
BS01528.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2692-PA | 1350 | gsb-n-RA | 533..1350 | 836..19 | 4090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:24:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gsb-n-RA | 2237 | CG2692-RA | 856..1673 | 836..19 | 4090 | 100 | Minus |
gsb-RA | 1649 | CG3388-RA | 746..912 | 816..650 | 220 | 75.4 | Minus |
prd-RB | 2459 | CG6716-RB | 924..1110 | 836..650 | 185 | 73.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25041333..25041878 | 291..836 | 2730 | 100 | Plus |
2R | 25286936 | 2R | 25040947..25041220 | 19..292 | 1370 | 100 | Plus |
2R | 25286936 | 2R | 25063740..25063906 | 816..650 | 220 | 75.4 | Minus |
2L | 23513712 | 2L | 12084344..12084530 | 650..836 | 185 | 73.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:24:04 has no hits.
BS01528.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:56 Download gff for
BS01528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-PA | 534..1350 | 19..835 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:24 Download gff for
BS01528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2692-PA | 534..1350 | 19..835 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:41:22 Download gff for
BS01528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-RA | 857..1673 | 19..835 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:43:40 Download gff for
BS01528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-RA | 857..1673 | 19..835 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:43:40 Download gff for
BS01528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25040947..25041218 | 19..290 | 100 | <- | Plus |
2R | 25041333..25041877 | 291..835 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:41:22 Download gff for
BS01528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20928470..20928741 | 19..290 | 100 | <- | Plus |
arm_2R | 20928856..20929400 | 291..835 | 100 | | Plus |
BS01528.5prime Sequence
745 bp (712 high quality bases) assembled on 2005-11-29
> BS01528.5prime
GAAGTTATCAGTCGACATGGATATGTCCAGCGCGAACTCGTTGCGGCCCC
TTTTCGCAGGGTATCCCTTTCAAGGACAAGGCCGGGTAAATCAGCTTGGG
GGCGTCTTTATCAATGGACGTCCGTTGCCCAATCACATTCGACTGAAGAT
CGTGGAAATGGCGGCCAGTGGAGTGCGGCCTTGTGTAATATCGCGCCAGC
TCCGCGTGTCTCACGGCTGCGTATCGAAGATTCTGAACCGATACCAGGAG
ACGGGTTCTATTAGACCGGGCGTAATAGGTGGATCTAAGCCCAAGGTGAC
CTCTCCCGAAATTGAAACGCGGATCGATGAGCTGCGAAAGGAAAACCCCA
GCATATTCAGCTGGGAAATACGCGAAAAGCTGATAAAGGAGGGCTTTGCG
GATCCACCATCAACATCGTCGATCAGTCGCTTATTGCGGGGAAGCGATCG
CGGCAGCGAAGATGGTCGGAAGGACTATACCATAAATGGAATTCTTGGAG
GGCGAGACTCAGATATAAGTGACACGGAATCGGAGCCTGGGATTCCGCTG
AAACGCAAGCAGCGTCGCTCCCGCACCACCTTCACCGCCGAGCAGCTAGA
GGCACTCGAGCGAGCCTTTTCCCGCACCCAATACCCGGACGTCTACACCC
GGGAAGAGCTGGCTCAGACCACGGCCCTCACCGAAGCCCGTATCCAGGTA
TGGTTCTCCAACCGCAGGGCACGCCTTCGCAAGCACTCTGGCGGC
BS01528.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2692-PA | 1350 | gsb-n-RA | 1..729 | 17..745 | 3645 | 100 | Plus |
CG6716-PA | 1773 | prd-RA | 151..218 | 215..282 | 140 | 88.2 | Plus |
CG6716-PB | 1842 | prd-RB | 220..287 | 215..282 | 140 | 88.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gsb-n-RA | 2237 | CG2692-RA | 323..1052 | 16..745 | 3650 | 100 | Plus |
gsb-RA | 1649 | CG3388-RA | 227..447 | 62..282 | 460 | 81.6 | Plus |
prd-RB | 2459 | CG6716-RB | 392..594 | 89..291 | 370 | 78.8 | Plus |
gsb-RA | 1649 | CG3388-RA | 746..912 | 569..735 | 220 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25051309..25051625 | 389..73 | 1585 | 100 | Minus |
2R | 25286936 | 2R | 25041682..25041928 | 745..499 | 1235 | 100 | Minus |
2R | 25286936 | 2R | 25048046..25048160 | 501..387 | 575 | 100 | Minus |
2R | 25286936 | 2R | 25063228..25063441 | 69..282 | 410 | 79.4 | Plus |
2L | 23513712 | 2L | 12084860..12085062 | 291..89 | 370 | 78.8 | Minus |
2R | 25286936 | 2R | 25051950..25052009 | 75..16 | 300 | 100 | Minus |
2R | 25286936 | 2R | 25063740..25063906 | 569..735 | 220 | 75.4 | Plus |
2L | 23513712 | 2L | 12084344..12084530 | 735..549 | 185 | 73.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:10:43 has no hits.
BS01528.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:57 Download gff for
BS01528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-PA | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:25 Download gff for
BS01528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2692-PA | 1..729 | 17..745 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:01:45 Download gff for
BS01528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-RA | 310..1052 | 5..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:47 Download gff for
BS01528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-RA | 310..1052 | 5..745 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:47 Download gff for
BS01528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25041682..25041926 | 501..745 | 100 | <- | Minus |
2R | 25048047..25048158 | 389..500 | 100 | <- | Minus |
2R | 25051310..25051623 | 75..388 | 100 | <- | Minus |
2R | 25051951..25052021 | 5..74 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:01:45 Download gff for
BS01528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20929205..20929449 | 501..745 | 100 | <- | Minus |
arm_2R | 20935570..20935681 | 389..500 | 100 | <- | Minus |
arm_2R | 20938833..20939146 | 75..388 | 100 | <- | Minus |
arm_2R | 20939474..20939544 | 5..74 | 93 | | Minus |
BS01528.complete Sequence
1384 bp (1384 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634634
> BS01528.complete
GAAGTTATCAGTCGACATGGATATGTCCAGCGCGAACTCGTTGCGGCCCC
TTTTCGCAGGGTATCCCTTTCAAGGACAAGGCCGGGTAAATCAGCTTGGG
GGCGTCTTTATCAATGGACGTCCGTTGCCCAATCACATTCGACTGAAGAT
CGTGGAAATGGCGGCCAGTGGAGTGCGGCCTTGTGTAATATCGCGCCAGC
TCCGCGTGTCTCACGGCTGCGTATCGAAGATTCTGAACCGATACCAGGAG
ACGGGTTCTATTAGACCGGGCGTAATAGGTGGATCTAAGCCCAAGGTGAC
CTCTCCCGAAATTGAAACGCGGATCGATGAGCTGCGAAAGGAAAACCCCA
GCATATTCAGCTGGGAAATACGCGAAAAGCTGATAAAGGAGGGCTTTGCG
GATCCACCATCAACATCGTCGATCAGTCGCTTATTGCGGGGAAGCGATCG
CGGCAGCGAAGATGGTCGGAAGGACTATACCATAAATGGAATTCTTGGAG
GGCGAGACTCAGATATAAGTGACACGGAATCGGAGCCTGGGATTCCGCTG
AAACGCAAGCAGCGTCGCTCCCGCACCACCTTCACCGCCGAGCAGCTAGA
GGCACTCGAGCGAGCCTTTTCCCGCACCCAATACCCGGACGTCTACACCC
GGGAAGAGCTGGCTCAGACCACGGCCCTCACCGAAGCCCGTATCCAGGTA
TGGTTCTCCAACCGCAGGGCACGCCTTCGCAAGCACTCTGGCGGCTCAAA
CTCCGGGCTTTCGCCCATGAACAGTGGAAGCTCTAATGTGGGCGTGGGTG
TTGGGCTCAGTGGGGCGACAGCACCACTTGGCTACGGCCCTTTGGGAGTT
GGTTCGATGGCGGGCTACAGTCCTGCGCCGGGAACCACTGCCACTGGAGC
TGGGATGAACGACGGAGTTCACCACGCCGCACACGCACCAAGCTCCCACC
ACAGCGCAGCAACGGCTGCTGCAGCGGCACACCATCACACACAGATGGGT
GGCTACGATTTGGTCCAAAGTGCGGCTCAACACGGATTTCCCGGGGGCTT
TGCTCAGCCGGGACACTTTGGTAGTCAAAACTATTACCATCAAGACTATT
CCAAGCTGACCATTGACGACTTCTCAAAGCTCACCGCCGACAGTGTCTCA
AAGATCTCGCCCTCACTACACCTCAGCGACAACTACTCGAAGCTGGAGGC
TCCCTCAAACTGGTCACAGGCCGCCTACCACGCCGCCGCCAACTACAATG
CCCACGTAGCCCAGCACCAGCTCAATGACTATGCCGCTGCAGCGGCTCAC
GGGAACCCGGCCTCCGCCTACAGCCACCCCCTGCCGACGCAGGGTCAGGC
CAAGTACTGGTCATGACGAAGCTTTCTAGACCAT
BS01528.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:51:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gsb-n-RA | 1350 | CG2692-PA | 1..1350 | 17..1366 | 6750 | 100 | Plus |
gsb-RA | 1284 | CG3388-PA | 43..263 | 62..282 | 460 | 80.5 | Plus |
prd-RB | 1842 | CG6716-PB | 94..296 | 89..291 | 370 | 78.8 | Plus |
gsb-RA | 1284 | CG3388-PA | 562..728 | 569..735 | 220 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gsb-n-RA | 2237 | CG2692-RA | 323..1673 | 16..1366 | 6755 | 100 | Plus |
gsb-RA | 1649 | CG3388-RA | 227..447 | 62..282 | 460 | 80.5 | Plus |
prd-RB | 2459 | CG6716-RB | 392..594 | 89..291 | 370 | 78.8 | Plus |
gsb-RA | 1649 | CG3388-RA | 746..912 | 569..735 | 220 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25041333..25041928 | 1094..499 | 2980 | 100 | Minus |
2R | 25286936 | 2R | 25051309..25051625 | 389..73 | 1585 | 100 | Minus |
2R | 25286936 | 2R | 25040947..25041220 | 1366..1093 | 1370 | 100 | Minus |
2R | 25286936 | 2R | 25048046..25048160 | 501..387 | 575 | 100 | Minus |
2R | 25286936 | 2R | 25063228..25063441 | 69..282 | 410 | 79.4 | Plus |
2L | 23513712 | 2L | 12084860..12085062 | 291..89 | 370 | 78.8 | Minus |
2R | 25286936 | 2R | 25051950..25052009 | 75..16 | 300 | 100 | Minus |
2R | 25286936 | 2R | 25063740..25063906 | 569..735 | 220 | 75.4 | Plus |
2L | 23513712 | 2L | 12084344..12084530 | 735..549 | 185 | 73.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:51:30 has no hits.
BS01528.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:49 Download gff for
BS01528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-RA | 1..1350 | 17..1366 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:22 Download gff for
BS01528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-RA | 320..1669 | 17..1368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:25 Download gff for
BS01528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-RA | 324..1673 | 17..1368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:50 Download gff for
BS01528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-RA | 306..1669 | 5..1366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:05:22 Download gff for
BS01528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-n-RA | 324..1673 | 17..1368 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:05:22 Download gff for
BS01528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25040945..25041218 | 1095..1368 | 99 | <- | Minus |
2R | 25041333..25041926 | 501..1094 | 100 | <- | Minus |
2R | 25048047..25048158 | 389..500 | 100 | <- | Minus |
2R | 25051310..25051623 | 75..388 | 100 | <- | Minus |
2R | 25051951..25052008 | 17..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:25 Download gff for
BS01528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20935570..20935681 | 389..500 | 100 | <- | Minus |
arm_2R | 20928468..20928741 | 1095..1368 | 99 | <- | Minus |
arm_2R | 20928856..20929449 | 501..1094 | 100 | <- | Minus |
arm_2R | 20938833..20939146 | 75..388 | 100 | <- | Minus |
arm_2R | 20939474..20939531 | 17..74 | 100 | | Minus |
BS01528.pep Sequence
Translation from 16 to 1365
> BS01528.pep
MDMSSANSLRPLFAGYPFQGQGRVNQLGGVFINGRPLPNHIRLKIVEMAA
SGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPKVTSPEIE
TRIDELRKENPSIFSWEIREKLIKEGFADPPSTSSISRLLRGSDRGSEDG
RKDYTINGILGGRDSDISDTESEPGIPLKRKQRRSRTTFTAEQLEALERA
FSRTQYPDVYTREELAQTTALTEARIQVWFSNRRARLRKHSGGSNSGLSP
MNSGSSNVGVGVGLSGATAPLGYGPLGVGSMAGYSPAPGTTATGAGMNDG
VHHAAHAPSSHHSAATAAAAAHHHTQMGGYDLVQSAAQHGFPGGFAQPGH
FGSQNYYHQDYSKLTIDDFSKLTADSVSKISPSLHLSDNYSKLEAPSNWS
QAAYHAAANYNAHVAQHQLNDYAAAAAHGNPASAYSHPLPTQGQAKYWS*
BS01528.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gsb-n-PA | 449 | CG2692-PA | 1..449 | 1..449 | 2351 | 100 | Plus |
gsb-PA | 427 | CG3388-PA | 4..328 | 5..310 | 892 | 58.3 | Plus |
prd-PB | 613 | CG6716-PB | 12..360 | 10..324 | 860 | 57 | Plus |
prd-PA | 590 | CG6716-PA | 4..337 | 20..324 | 850 | 58 | Plus |
Poxm-PC | 370 | CG9610-PC | 11..133 | 22..141 | 428 | 66.7 | Plus |