Clone BS01529 Report

Search the DGRC for BS01529

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:15
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptMad-RA
Protein status:BS01529.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01529.3prime Sequence

755 bp (753 high quality bases) assembled on 2005-11-29

> BS01529.3prime
ATGGTCTAGAAAGCTTCGTTAGGATACCGAACTAATTGCATTATGCGGAG
AGCCCATTTGGGTGAGCACCTTGTCCAGCCACTGGAGCGGCCCGTGCAGA
TGGATTTCAATCCAACAGGGCGTCGAGGTCACATCCTGGCGATGATACTC
CGCACCCCAGCCCTTCACGAACGACATCCGGATCGTGCACATCTTTGTCA
GCTCGTAGACGGCCTCGAATCCATTGTTCACCGACTGCGACAGCAGCTGA
GCAAATTCCTGATTGTTGAAGATCTTCAGCGAGCAGCCCGGCGGTATTTT
GCACACGGTGCTCGGATGGAATCCGTGGTGGTAGTTGCAGTTGCGCGACT
GCACGAAAATGGCGGAGTCGGATAGGCATTCGGCGTAGACCTCGCCGGTC
ACATAGTATAAATGAACACCCTTGCCTATATGACGGCGTGTGTTCTCGAT
GGTGCTATTCCTGTTCACGTTGCTCAGCTGGCCGAGACAGCAGCGGTCCG
AGTTGTTGGAAGGATTCGTGAAACCGTCAACGATCACGGAGTTGTTGTTG
CAGTGGAACACCTCGCCCACGCGGCAATTTAGCTCGTAGTAGGCTATCGA
CGCCCAGAAGGCGGGCTCCGAATAGCTAACCTGGGCAACATCGCCCATCT
GAGCATCCAGCAGCTGGCCACCGTCGTTCGGATTGTTGGAGTTGCCATCC
TCCGAGGGACTGTAGGCGGGTGGCGGTGTTCCCGCCAAGCTGTCGTACGG
CGAAT

BS01529.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12399-PA 1368 Mad-RA 632..1368 755..19 3685 100 Minus
CG2262-PA 1461 Smox-RA 1348..1406 132..74 170 91.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
Mad-RB 3262 CG12399-RB 1163..1899 755..19 3685 100 Minus
Mad-RA 2691 CG12399-RA 988..1724 755..19 3685 100 Minus
Smox-RB 4521 CG2262-RB 2041..2306 318..53 550 80.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3147419..3147827 19..427 2045 100 Plus
2L 23513712 2L 3148046..3148376 425..755 1655 100 Plus
X 23542271 X 8139256..8139521 53..318 550 80.5 Plus
Blast to na_te.dros performed on 2015-02-12 05:07:32 has no hits.

BS01529.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:58 Download gff for BS01529.3prime
Subject Subject Range Query Range Percent Splice Strand
Mad-PA 632..1368 19..755 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:27 Download gff for BS01529.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12399-PA 632..1368 19..755 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:13:13 Download gff for BS01529.3prime
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 988..1728 11..755 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:31 Download gff for BS01529.3prime
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 988..1728 11..755 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:31 Download gff for BS01529.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3147423..3147825 22..425 99 <- Plus
2L 3148047..3148376 426..755 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:13:13 Download gff for BS01529.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3147423..3147825 22..425 99 <- Plus
arm_2L 3148047..3148376 426..755 100   Plus

BS01529.5prime Sequence

841 bp (728 high quality bases) assembled on 2005-11-29

> BS01529.5prime
GAAGTTATCAGTCGACATGGACACCGACGATGTGGAATCGAACACAAGCA
GCGCGATGTCCACACTGGGCTCGCTATTCTCCTTCACATCGCCGGCGGTG
AAGAAGCTGCTGGGCTGGAAACAGGGTGACGAAGAGGAGAAGTGGGCGGA
GAAGGCCGTCGACAGTCTGGTGAAGAAGTTGAAGAAGCGCAAGGGCGCCA
TCGAGGAGCTGGAGCGTGCGCTCTCCTGTCCCGGTCAGCCCTCGAAGTGT
GTCACCATTCCACGCTCGCTGGACGGACGATTACAGGTCTCCCATCGCAA
GGGTCTGCCGCATGTGATCTACTGCCGCGTGTGGCGCTGGCCAGATCTGC
AGTCGCACCACGAACTGAAGCCACTCGAGCTGTGCCAGTATCCGTTCAGC
GCCAAGCAGAAGGAGGTGTGCATCAATCCGTATCACTATAAGCGCGTGGA
GAGTCCGGTGCTCCCGCCAGTACTCGTTCCTCGCCACTCGGAATTCGCGC
CCGGTCACTCGATGCTGCAGTTCAACCATGTGGCCGAGCCCAGTATGCCG
CACAATGTGAGCTACTCGAACAGTGGATTCAACTCGCACAGCTTGAGCAC
CAGCAACACATCGGTGGGCAGTCCGAGTTCCGTCAACTCCAATCCCAATT
CGCCGTACGACAGCTTGGCGGGAACACCGCCACCCGCCTACAGTCCCTCG
GAGGATGGCAACTCCAACAATCCGAACGACGGTGGCCAGCTGCTGGATGC
TCAGATGGGCGATGTTGCCCAGGTTAGCTATTCGGAGCCCGCCTTCTGGG
CGTCGATAGCCTACTACGAGCTAAATTGCCGCGTGGGCGAG

BS01529.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12399-PA 1368 Mad-RA 1..825 17..841 4125 100 Plus
CG2262-PA 1461 Smox-RA 232..284 296..348 140 90.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
Mad-RB 3262 CG12399-RB 532..1356 17..841 4125 100 Plus
Mad-RA 2691 CG12399-RA 357..1181 17..841 4125 100 Plus
Smox-RB 4521 CG2262-RB 1111..1193 296..378 205 83.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3148183..3148740 841..284 2790 100 Minus
2L 23513712 2L 3148802..3149073 288..17 1360 100 Minus
X 23542271 X 8140369..8140451 378..296 205 83.1 Minus
Blast to na_te.dros performed on 2015-02-12 12:33:42 has no hits.

BS01529.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:09:59 Download gff for BS01529.5prime
Subject Subject Range Query Range Percent Splice Strand
Mad-PA 1..825 17..841 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:28 Download gff for BS01529.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12399-PA 1..825 17..841 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:21:34 Download gff for BS01529.5prime
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 350..1181 9..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:21:13 Download gff for BS01529.5prime
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 350..1181 9..841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:21:13 Download gff for BS01529.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3148183..3148737 287..841 100 <- Minus
2L 3148804..3149077 9..286 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:21:34 Download gff for BS01529.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3148183..3148737 287..841 100 <- Minus
arm_2L 3148804..3149077 9..286 98   Minus

BS01529.complete Sequence

1402 bp (1402 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634635

> BS01529.complete
GAAGTTATCAGTCGACATGGACACCGACGATGTGGAATCGAACACAAGCA
GCGCGATGTCCACACTGGGCTCGCTATTCTCCTTCACATCGCCGGCGGTG
AAGAAGCTGCTGGGCTGGAAACAGGGTGACGAAGAGGAGAAGTGGGCGGA
GAAGGCCGTCGACAGTCTGGTGAAGAAGTTGAAGAAGCGCAAGGGCGCCA
TCGAGGAGCTGGAGCGTGCGCTCTCCTGTCCCGGTCAGCCCTCGAAGTGT
GTCACCATTCCACGCTCGCTGGACGGACGATTACAGGTCTCCCATCGCAA
GGGTCTGCCGCATGTGATCTACTGCCGCGTGTGGCGCTGGCCAGATCTGC
AGTCGCACCACGAACTGAAGCCACTCGAGCTGTGCCAGTATCCGTTCAGC
GCCAAGCAGAAGGAGGTGTGCATCAATCCGTATCACTATAAGCGCGTGGA
GAGTCCGGTGCTCCCGCCAGTACTCGTTCCTCGCCACTCGGAATTCGCGC
CCGGTCACTCGATGCTGCAGTTCAACCATGTGGCCGAGCCCAGTATGCCG
CACAATGTGAGCTACTCGAACAGTGGATTCAACTCGCACAGCTTGAGCAC
CAGCAACACATCGGTGGGCAGTCCGAGTTCCGTCAACTCCAATCCCAATT
CGCCGTACGACAGCTTGGCGGGAACACCGCCACCCGCCTACAGTCCCTCG
GAGGATGGCAACTCCAACAATCCGAACGACGGTGGCCAGCTGCTGGATGC
TCAGATGGGCGATGTTGCCCAGGTTAGCTATTCGGAGCCCGCCTTCTGGG
CGTCGATAGCCTACTACGAGCTAAATTGCCGCGTGGGCGAGGTGTTCCAC
TGCAACAACAACTCCGTGATCGTTGACGGTTTCACGAATCCTTCCAACAA
CTCGGACCGCTGCTGTCTCGGCCAGCTGAGCAACGTGAACAGGAATAGCA
CCATCGAGAACACACGCCGTCATATAGGCAAGGGTGTTCATTTATACTAT
GTGACCGGCGAGGTCTACGCCGAATGCCTATCCGACTCCGCCATTTTCGT
GCAGTCGCGCAACTGCAACTACCACCACGGATTCCATCCGAGCACCGTGT
GCAAAATACCGCCGGGCTGCTCGCTGAAGATCTTCAACAATCAGGAATTT
GCTCAGCTGCTGTCGCAGTCGGTGAACAATGGATTCGAGGCCGTCTACGA
GCTGACAAAGATGTGCACGATCCGGATGTCGTTCGTGAAGGGCTGGGGTG
CGGAGTATCATCGCCAGGATGTGACCTCGACGCCCTGTTGGATTGAAATC
CATCTGCACGGGCCGCTCCAGTGGCTGGACAAGGTGCTCACCCAAATGGG
CTCTCCGCATAATGCAATTAGTTCGGTATCCTAACGAAGCTTTCTAGACC
AT

BS01529.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
Mad-RB 1578 CG12399-PB 211..1578 17..1384 6840 100 Plus
Mad-RA 1368 CG12399-PA 1..1368 17..1384 6840 100 Plus
Smox-RB 1461 CG2262-PB 1162..1427 1085..1350 550 80.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Mad-RB 3262 CG12399-RB 532..1899 17..1384 6840 100 Plus
Mad-RA 2691 CG12399-RA 357..1724 17..1384 6840 100 Plus
Smox-RB 4521 CG2262-RB 2041..2306 1085..1350 550 80.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3148046..3148740 978..284 3475 100 Minus
2L 23513712 2L 3147419..3147827 1384..976 2045 100 Minus
2L 23513712 2L 3148802..3149073 288..17 1360 100 Minus
X 23542271 X 8139256..8139521 1350..1085 550 80.5 Minus
X 23542271 X 8140369..8140451 378..296 205 83.1 Minus
Blast to na_te.dros performed on 2014-11-28 07:51:35 has no hits.

BS01529.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:51 Download gff for BS01529.complete
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 1..1368 17..1384 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:24 Download gff for BS01529.complete
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 344..1712 17..1386 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:27 Download gff for BS01529.complete
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 357..1725 17..1386 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:51 Download gff for BS01529.complete
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 337..1715 9..1392 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:05:23 Download gff for BS01529.complete
Subject Subject Range Query Range Percent Splice Strand
Mad-RA 357..1725 17..1386 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:05:23 Download gff for BS01529.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3147418..3147825 978..1386 99 <- Minus
2L 3148047..3148737 287..977 100 <- Minus
2L 3148804..3149073 17..286 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:27 Download gff for BS01529.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3147418..3147825 978..1386 99 <- Minus
arm_2L 3148047..3148737 287..977 100 <- Minus
arm_2L 3148804..3149073 17..286 100   Minus

BS01529.pep Sequence

Translation from 16 to 1383

> BS01529.pep
MDTDDVESNTSSAMSTLGSLFSFTSPAVKKLLGWKQGDEEEKWAEKAVDS
LVKKLKKRKGAIEELERALSCPGQPSKCVTIPRSLDGRLQVSHRKGLPHV
IYCRVWRWPDLQSHHELKPLELCQYPFSAKQKEVCINPYHYKRVESPVLP
PVLVPRHSEFAPGHSMLQFNHVAEPSMPHNVSYSNSGFNSHSLSTSNTSV
GSPSSVNSNPNSPYDSLAGTPPPAYSPSEDGNSNNPNDGGQLLDAQMGDV
AQVSYSEPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCC
LGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEVYAECLSDSAIFVQSRNC
NYHHGFHPSTVCKIPPGCSLKIFNNQEFAQLLSQSVNNGFEAVYELTKMC
TIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNA
ISSVS*

BS01529.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
Mad-PB 525 CG12399-PB 71..525 1..455 2468 100 Plus
Mad-PA 455 CG12399-PA 1..455 1..455 2468 100 Plus
Smox-PB 486 CG2262-PB 1..486 20..455 1261 53 Plus
Smox-PA 486 CG2262-PA 1..486 20..455 1261 53 Plus
Med-PB 697 CG1775-PB 381..688 174..444 371 33.5 Plus