Clone BS01533 Report

Search the DGRC for BS01533

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:15
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptTfAP-2-RB
Protein status:BS01533.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01533.3prime Sequence

865 bp (777 high quality bases) assembled on 2005-11-29

> BS01533.3prime
ATGGTCTAGAAAGCTTCGTCATTTCTTTTCGTTGTCAATTTTACTTTTGT
CCAACGACGACGACACCATCCCTCCGCCGTTCGAAGGGTACAGCTTTTCC
AAGTAGTTTAATGACTCGTTTAAAAATGTCTGAAAAGCGTGCAGAACAGC
CATAATCGCGGGCGATCCGAATCCGTGCGTTATCAGGGAGAAGTGCGTCA
AGTGGCGCTGCATCGATGGTTCCAGCAGATGCTGTGATCTCGTCCCAAAG
TGGGTCGTTCGATCTTGGCTCAGGATCTGCATAAGCTCTTTTGTTATCTG
CTGGGAGTGGAGAATGAGCTCTTTTCGACGGTACGAGTCCTGCGGCTCCG
TTTGGTGGCGCACGATGTACTCGGCCAGCTGCCTGGCGGGGAATTCGGTT
TCGCAAACGAAGTGAAAGTCCTTGGCCAGGTGCGTTGCCTCCCCCTCAAC
CAAGGATGTCAGTAGGGTGACGTTGGCCGCTTTCCGTCTACCGGCGGGTA
GATTGAGGCCGATCTTTTCCAGCTTCTCCCTCAACAGGCGACCTCCGTTC
TTGCTCTTAGCCCTTCGGAGCACTCCGCCCAGCAGGGAGGCGTTCAAGCA
CTCGGGCGGCGAGAGTCGACGCTGTACTTCGGCTATGGTGACCTTGTATT
TCGAGGTGCTCGATAGGAGACTGAGGCGACCAGGAACTGCACAGAATACC
TCGCTGGGCGAACCCGATCCAATGTTCCCGGCTTCTTTTCCGCTTTTCAT
GCTCTTTATGAGCGGCAAGTCTGACATGAACGCCACATTGTCGTCGAGGG
CAGGAGCTTGGACATCATCGACGGCGTTTTGAAGGGCTTGGTGCAGCGCC
AGGGACTCGTGCTCG

BS01533.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7807-PB 1398 AP-2-RB 552..1398 865..19 4235 100 Minus
CG7807-PA 1386 AP-2-RA 540..1386 865..19 4235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
TfAP-2-RF 1823 CG7807-RF 582..1428 865..19 4235 100 Minus
TfAP-2-RE 2012 CG7807-RE 771..1617 865..19 4235 100 Minus
TfAP-2-RD 2237 CG7807-RD 996..1842 865..19 4235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21612243..21612509 564..298 1335 100 Minus
3L 28110227 3L 21611995..21612185 752..562 955 100 Minus
3L 28110227 3L 21612610..21612780 300..130 855 100 Minus
3L 28110227 3L 21612841..21612954 132..19 570 100 Minus
3L 28110227 3L 21611238..21611351 865..752 570 100 Minus
Blast to na_te.dros performed 2015-02-12 03:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
X-element 4740 X-element ROXELEMENT 4740bp 930..1003 566..495 112 64.9 Minus

BS01533.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:07 Download gff for BS01533.3prime
Subject Subject Range Query Range Percent Splice Strand
AP-2-PA 540..1386 19..865 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:37 Download gff for BS01533.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7807-PA 540..1386 19..865 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:13:26 Download gff for BS01533.3prime
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RD 996..1848 12..865 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:10 Download gff for BS01533.3prime
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RD 996..1848 12..865 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:10 Download gff for BS01533.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21612245..21612509 298..562 100 -> Minus
3L 21612613..21612780 130..297 100 -> Minus
3L 21612844..21612960 12..129 97   Minus
3L 21611238..21611350 753..865 100 -> Minus
3L 21611995..21612184 563..752 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:13:26 Download gff for BS01533.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21604338..21604450 753..865 100 -> Minus
arm_3L 21605095..21605284 563..752 100 -> Minus
arm_3L 21605345..21605609 298..562 100 -> Minus
arm_3L 21605713..21605880 130..297 100 -> Minus
arm_3L 21605944..21606060 12..129 97   Minus

BS01533.5prime Sequence

873 bp (691 high quality bases) assembled on 2005-11-29

> BS01533.5prime
GAAGTTATCAGTCGACATGCACATTCTACACCGCACCAACGACCATCAGT
TCGAGGATCAGAAGTTCATGATGGAACGCCTCAGTGGACATGGGAGTCTA
GGGCTGTCCAGCGGCAGTGCGGCGTACACAACGCATTCCGGCGGCCACAC
GGGACGCAGCGGACCGGCCACGGGGCACAGTGGGCACAGCAGCACCCATG
GATCGGCGGCCACCATGCACCACCAGTCGCTGCAGTCCGACTTCCAGCCG
CCGTACTTCCCGCCCCCCTTCCACCACTCCACCCAGAGTCCTCCCCAGCA
ACAGAACCATGGAGCCCTCGAGTACTTGGGCACGGATCCGTATGGCCAGC
CCCTCTCCTCGCTTCACCACGCCCCACTGCACCACTACAACCAGCTGGCG
GGACTGAGATCCACGCAGGACCAACTGGGGATCCACAGGACCCACAGAGA
GGCTGAGCTGCAGGGACATGTCACCCAATTGTCACATGGATTTCCGTACA
CGGATAGGAGGAGCGATTACGGCAGTGCAATATCCGCGGGAGCTGCCCAC
GGAACGAGACTTGGCCACGAGCACGAGTCCCTGGCGCTGCACCAAGCCCT
TCAAAACGCCGTCGATGATGTCCAAGCTCCTGCCCTCGACGACAATGTGG
CGTTCATGTCAGACTTGCCGCTCATAAAGAGCATGAAAAGCGGAAAAGAA
GCCGGGAACATTGGATCGGGTTCGCCCAGCGAGGTATTCTGTGCAGTTCC
TGGTCGCCTCAGTCTCCTATCGAGCACCTCGAAATACAAGGTCACCATAG
CCGAAGTACAGCGTCGACTCTCGCCGCCCGAGTGCTTGAACGCCTCCCTG
CTGGGCGGAGTGCTCCGAAGGGC

BS01533.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7807-PB 1398 AP-2-RB 1..857 17..873 4285 100 Plus
CG7807-PA 1386 AP-2-RA 45..845 73..873 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
TfAP-2-RB 2219 CG7807-RB 425..1283 15..873 4295 100 Plus
TfAP-2-RD 2237 CG7807-RD 425..1301 15..873 4105 97.9 Plus
TfAP-2-RC 1805 CG7807-RC 69..869 73..873 4005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21609418..21609649 73..304 1160 100 Plus
3L 28110227 3L 21611143..21611351 473..681 1045 100 Plus
3L 28110227 3L 21611995..21612185 681..871 955 100 Plus
3L 28110227 3L 21609716..21609886 302..472 855 100 Plus
3L 28110227 3L 21599280..21599339 15..74 300 100 Plus
Blast to na_te.dros performed on 2015-02-10 03:18:27 has no hits.

BS01533.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:08 Download gff for BS01533.5prime
Subject Subject Range Query Range Percent Splice Strand
AP-2-PB 1..857 17..873 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:38 Download gff for BS01533.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7807-PB 1..857 17..873 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:55 Download gff for BS01533.5prime
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RB 422..1283 12..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:15:12 Download gff for BS01533.5prime
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RB 422..1283 12..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:15:12 Download gff for BS01533.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21599277..21599338 12..73 98 -> Plus
3L 21609419..21609649 74..304 100 -> Plus
3L 21609719..21609886 305..472 100 -> Plus
3L 21611143..21611350 473..680 100 -> Plus
3L 21611995..21612185 681..873 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:55 Download gff for BS01533.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21592377..21592438 12..73 98 -> Plus
arm_3L 21602519..21602749 74..304 100 -> Plus
arm_3L 21602819..21602986 305..472 100 -> Plus
arm_3L 21604243..21604450 473..680 100 -> Plus
arm_3L 21605095..21605285 681..873 98   Plus

BS01533.complete Sequence

1432 bp (1432 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634637

> BS01533.complete
GAAGTTATCAGTCGACATGCACATTCTACACCGCACCAACGACCATCAGT
TCGAGGATCAGAAGTTCATGATGGAACGCCTCAGTGGACATGGGAGTCTA
GGGCTGTCCAGCGGCAGTGCGGCGTACACAACGCATTCCGGCGGCCACAC
GGGACGCAGCGGACCGGCCACGGGGCACAGTGGGCACAGCAGCACCCATG
GATCGGCGGCCACCATGCACCACCAGTCGCTGCAGTCCGACTTCCAGCCG
CCGTACTTCCCGCCCCCCTTCCACCACTCCACCCAGAGTCCTCCCCAGCA
ACAGAACCATGGAGCCCTCGAGTACTTGGGCACGGATCCGTATGGCCAGC
CCCTCTCCTCGCTTCACCACGCCCCACTGCACCACTACAACCAGCTGGCG
GGACTGAGATCCACGCAGGACCAACTGGGGATCCACAGGACCCACAGAGA
GGCTGAGCTGCAGGGACATGTCACCCAATTGTCACATGGATTTCCGTACA
CGGATAGGAGGAGCGATTACGGCAGTGCAATATCCGCGGGAGCTGCCCAC
GGAACGAGACTTGGCCACGAGCACGAGTCCCTGGCGCTGCACCAAGCCCT
TCAAAACGCCGTCGATGATGTCCAAGCTCCTGCCCTCGACGACAATGTGG
CGTTCATGTCAGACTTGCCGCTCATAAAGAGCATGAAAAGCGGAAAAGAA
GCCGGGAACATTGGATCGGGTTCGCCCAGCGAGGTATTCTGTGCAGTTCC
TGGTCGCCTCAGTCTCCTATCGAGCACCTCGAAATACAAGGTCACCATAG
CCGAAGTACAGCGTCGACTCTCGCCGCCCGAGTGCTTGAACGCCTCCCTG
CTGGGCGGAGTGCTCCGAAGGGCTAAGAGCAAGAACGGAGGTCGCCTGTT
GAGGGAGAAGCTGGAAAAGATCGGCCTCAATCTACCCGCCGGTAGACGGA
AAGCGGCCAACGTCACCCTACTGACATCCTTGGTTGAGGGGGAGGCAACG
CACCTGGCCAAGGACTTTCACTTCGTTTGCGAAACCGAATTCCCCGCCAG
GCAGCTGGCCGAGTACATCGTGCGCCACCAAACGGAGCCGCAGGACTCGT
ACCGTCGAAAAGAGCTCATTCTCCACTCCCAGCAGATAACAAAAGAGCTT
ATGCAGATCCTGAGCCAAGATCGAACGACCCACTTTGGGACGAGATCACA
GCATCTGCTGGAACCATCGATGCAGCGCCACTTGACGCACTTCTCCCTGA
TAACGCACGGATTCGGATCGCCCGCGATTATGGCTGTTCTGCACGCTTTT
CAGACATTTTTAAACGAGTCATTAAACTACTTGGAAAAGCTGTACCCTTC
GAACGGCGGAGGGATGGTGTCGTCGTCGTTGGACAAAAGTAAAATTGACA
ACGAAAAGAAATGACGAAGCTTTCTAGACCAT

BS01533.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
TfAP-2-RB 1398 CG7807-PB 1..1398 17..1414 6990 100 Plus
TfAP-2-RD 1416 CG7807-PD 1..1416 17..1414 6775 98.7 Plus
TfAP-2-RC 1380 CG7807-PC 39..1380 73..1414 6710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
TfAP-2-RB 2219 CG7807-RB 425..1824 15..1414 7000 100 Plus
TfAP-2-RD 2237 CG7807-RD 425..1842 15..1414 6785 98.7 Plus
TfAP-2-RC 1805 CG7807-RC 69..1410 73..1414 6710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21612243..21612509 869..1135 1335 100 Plus
3L 28110227 3L 21609418..21609649 73..304 1160 100 Plus
3L 28110227 3L 21611143..21611351 473..681 1045 100 Plus
3L 28110227 3L 21611995..21612185 681..871 955 100 Plus
3L 28110227 3L 21609716..21609886 302..472 855 100 Plus
3L 28110227 3L 21612610..21612780 1133..1303 855 100 Plus
3L 28110227 3L 21612841..21612954 1301..1414 570 100 Plus
3L 28110227 3L 21599280..21599339 15..74 300 100 Plus
Blast to na_te.dros performed 2014-11-28 07:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
X-element 4740 X-element ROXELEMENT 4740bp 930..1003 867..938 112 64.9 Plus

BS01533.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:59 Download gff for BS01533.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2-RB 1..1398 17..1414 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:44:57 Download gff for BS01533.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2-RB 425..1822 17..1416 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:19 Download gff for BS01533.complete
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RB 427..1824 17..1416 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:59 Download gff for BS01533.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2-RB 420..1828 12..1421 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:00:19 Download gff for BS01533.complete
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RB 427..1824 17..1416 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:00:19 Download gff for BS01533.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21599282..21599338 17..73 100 -> Plus
3L 21609419..21609649 74..304 100 -> Plus
3L 21609719..21609886 305..472 100 -> Plus
3L 21611143..21611350 473..680 100 -> Plus
3L 21611995..21612184 681..870 100 -> Plus
3L 21612245..21612509 871..1135 100 -> Plus
3L 21612613..21612780 1136..1303 100 -> Plus
3L 21612844..21612954 1304..1416 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:19 Download gff for BS01533.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21602819..21602986 305..472 100 -> Plus
arm_3L 21602519..21602749 74..304 100 -> Plus
arm_3L 21592382..21592438 17..73 100 -> Plus
arm_3L 21604243..21604450 473..680 100 -> Plus
arm_3L 21605095..21605284 681..870 100 -> Plus
arm_3L 21605345..21605609 871..1135 100 -> Plus
arm_3L 21605713..21605880 1136..1303 100 -> Plus
arm_3L 21605944..21606054 1304..1416 98   Plus

BS01533.pep Sequence

Translation from 16 to 1413

> BS01533.pep
MHILHRTNDHQFEDQKFMMERLSGHGSLGLSSGSAAYTTHSGGHTGRSGP
ATGHSGHSSTHGSAATMHHQSLQSDFQPPYFPPPFHHSTQSPPQQQNHGA
LEYLGTDPYGQPLSSLHHAPLHHYNQLAGLRSTQDQLGIHRTHREAELQG
HVTQLSHGFPYTDRRSDYGSAISAGAAHGTRLGHEHESLALHQALQNAVD
DVQAPALDDNVAFMSDLPLIKSMKSGKEAGNIGSGSPSEVFCAVPGRLSL
LSSTSKYKVTIAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRLLREKLE
KIGLNLPAGRRKAANVTLLTSLVEGEATHLAKDFHFVCETEFPARQLAEY
IVRHQTEPQDSYRRKELILHSQQITKELMQILSQDRTTHFGTRSQHLLEP
SMQRHLTHFSLITHGFGSPAIMAVLHAFQTFLNESLNYLEKLYPSNGGGM
VSSSLDKSKIDNEKK*

BS01533.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
TfAP-2-PB 465 CG7807-PB 1..465 1..465 2437 100 Plus
TfAP-2-PD 471 CG7807-PD 1..471 1..465 2420 98.7 Plus
TfAP-2-PC 459 CG7807-PC 8..459 14..465 2332 98.9 Plus
TfAP-2-PA 461 CG7807-PA 14..461 18..465 2331 99.6 Plus
TfAP-2-PF 465 CG7807-PF 8..465 14..465 2315 97.6 Plus