Clone Sequence Records
BS01533.3prime Sequence
865 bp (777 high quality bases) assembled on 2005-11-29
> BS01533.3prime
ATGGTCTAGAAAGCTTCGTCATTTCTTTTCGTTGTCAATTTTACTTTTGT
CCAACGACGACGACACCATCCCTCCGCCGTTCGAAGGGTACAGCTTTTCC
AAGTAGTTTAATGACTCGTTTAAAAATGTCTGAAAAGCGTGCAGAACAGC
CATAATCGCGGGCGATCCGAATCCGTGCGTTATCAGGGAGAAGTGCGTCA
AGTGGCGCTGCATCGATGGTTCCAGCAGATGCTGTGATCTCGTCCCAAAG
TGGGTCGTTCGATCTTGGCTCAGGATCTGCATAAGCTCTTTTGTTATCTG
CTGGGAGTGGAGAATGAGCTCTTTTCGACGGTACGAGTCCTGCGGCTCCG
TTTGGTGGCGCACGATGTACTCGGCCAGCTGCCTGGCGGGGAATTCGGTT
TCGCAAACGAAGTGAAAGTCCTTGGCCAGGTGCGTTGCCTCCCCCTCAAC
CAAGGATGTCAGTAGGGTGACGTTGGCCGCTTTCCGTCTACCGGCGGGTA
GATTGAGGCCGATCTTTTCCAGCTTCTCCCTCAACAGGCGACCTCCGTTC
TTGCTCTTAGCCCTTCGGAGCACTCCGCCCAGCAGGGAGGCGTTCAAGCA
CTCGGGCGGCGAGAGTCGACGCTGTACTTCGGCTATGGTGACCTTGTATT
TCGAGGTGCTCGATAGGAGACTGAGGCGACCAGGAACTGCACAGAATACC
TCGCTGGGCGAACCCGATCCAATGTTCCCGGCTTCTTTTCCGCTTTTCAT
GCTCTTTATGAGCGGCAAGTCTGACATGAACGCCACATTGTCGTCGAGGG
CAGGAGCTTGGACATCATCGACGGCGTTTTGAAGGGCTTGGTGCAGCGCC
AGGGACTCGTGCTCG
BS01533.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7807-PB | 1398 | AP-2-RB | 552..1398 | 865..19 | 4235 | 100 | Minus |
CG7807-PA | 1386 | AP-2-RA | 540..1386 | 865..19 | 4235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfAP-2-RF | 1823 | CG7807-RF | 582..1428 | 865..19 | 4235 | 100 | Minus |
TfAP-2-RE | 2012 | CG7807-RE | 771..1617 | 865..19 | 4235 | 100 | Minus |
TfAP-2-RD | 2237 | CG7807-RD | 996..1842 | 865..19 | 4235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21612243..21612509 | 564..298 | 1335 | 100 | Minus |
3L | 28110227 | 3L | 21611995..21612185 | 752..562 | 955 | 100 | Minus |
3L | 28110227 | 3L | 21612610..21612780 | 300..130 | 855 | 100 | Minus |
3L | 28110227 | 3L | 21612841..21612954 | 132..19 | 570 | 100 | Minus |
3L | 28110227 | 3L | 21611238..21611351 | 865..752 | 570 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 03:48:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X-element | 4740 | X-element ROXELEMENT 4740bp | 930..1003 | 566..495 | 112 | 64.9 | Minus |
BS01533.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:07 Download gff for
BS01533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2-PA | 540..1386 | 19..865 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:37 Download gff for
BS01533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7807-PA | 540..1386 | 19..865 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:13:26 Download gff for
BS01533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfAP-2-RD | 996..1848 | 12..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:10 Download gff for
BS01533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfAP-2-RD | 996..1848 | 12..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:10 Download gff for
BS01533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21612245..21612509 | 298..562 | 100 | -> | Minus |
3L | 21612613..21612780 | 130..297 | 100 | -> | Minus |
3L | 21612844..21612960 | 12..129 | 97 | | Minus |
3L | 21611238..21611350 | 753..865 | 100 | -> | Minus |
3L | 21611995..21612184 | 563..752 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:13:26 Download gff for
BS01533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21604338..21604450 | 753..865 | 100 | -> | Minus |
arm_3L | 21605095..21605284 | 563..752 | 100 | -> | Minus |
arm_3L | 21605345..21605609 | 298..562 | 100 | -> | Minus |
arm_3L | 21605713..21605880 | 130..297 | 100 | -> | Minus |
arm_3L | 21605944..21606060 | 12..129 | 97 | | Minus |
BS01533.5prime Sequence
873 bp (691 high quality bases) assembled on 2005-11-29
> BS01533.5prime
GAAGTTATCAGTCGACATGCACATTCTACACCGCACCAACGACCATCAGT
TCGAGGATCAGAAGTTCATGATGGAACGCCTCAGTGGACATGGGAGTCTA
GGGCTGTCCAGCGGCAGTGCGGCGTACACAACGCATTCCGGCGGCCACAC
GGGACGCAGCGGACCGGCCACGGGGCACAGTGGGCACAGCAGCACCCATG
GATCGGCGGCCACCATGCACCACCAGTCGCTGCAGTCCGACTTCCAGCCG
CCGTACTTCCCGCCCCCCTTCCACCACTCCACCCAGAGTCCTCCCCAGCA
ACAGAACCATGGAGCCCTCGAGTACTTGGGCACGGATCCGTATGGCCAGC
CCCTCTCCTCGCTTCACCACGCCCCACTGCACCACTACAACCAGCTGGCG
GGACTGAGATCCACGCAGGACCAACTGGGGATCCACAGGACCCACAGAGA
GGCTGAGCTGCAGGGACATGTCACCCAATTGTCACATGGATTTCCGTACA
CGGATAGGAGGAGCGATTACGGCAGTGCAATATCCGCGGGAGCTGCCCAC
GGAACGAGACTTGGCCACGAGCACGAGTCCCTGGCGCTGCACCAAGCCCT
TCAAAACGCCGTCGATGATGTCCAAGCTCCTGCCCTCGACGACAATGTGG
CGTTCATGTCAGACTTGCCGCTCATAAAGAGCATGAAAAGCGGAAAAGAA
GCCGGGAACATTGGATCGGGTTCGCCCAGCGAGGTATTCTGTGCAGTTCC
TGGTCGCCTCAGTCTCCTATCGAGCACCTCGAAATACAAGGTCACCATAG
CCGAAGTACAGCGTCGACTCTCGCCGCCCGAGTGCTTGAACGCCTCCCTG
CTGGGCGGAGTGCTCCGAAGGGC
BS01533.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7807-PB | 1398 | AP-2-RB | 1..857 | 17..873 | 4285 | 100 | Plus |
CG7807-PA | 1386 | AP-2-RA | 45..845 | 73..873 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:18:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfAP-2-RB | 2219 | CG7807-RB | 425..1283 | 15..873 | 4295 | 100 | Plus |
TfAP-2-RD | 2237 | CG7807-RD | 425..1301 | 15..873 | 4105 | 97.9 | Plus |
TfAP-2-RC | 1805 | CG7807-RC | 69..869 | 73..873 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:18:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21609418..21609649 | 73..304 | 1160 | 100 | Plus |
3L | 28110227 | 3L | 21611143..21611351 | 473..681 | 1045 | 100 | Plus |
3L | 28110227 | 3L | 21611995..21612185 | 681..871 | 955 | 100 | Plus |
3L | 28110227 | 3L | 21609716..21609886 | 302..472 | 855 | 100 | Plus |
3L | 28110227 | 3L | 21599280..21599339 | 15..74 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:18:27 has no hits.
BS01533.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:08 Download gff for
BS01533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2-PB | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:38 Download gff for
BS01533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7807-PB | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:55 Download gff for
BS01533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfAP-2-RB | 422..1283 | 12..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:15:12 Download gff for
BS01533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfAP-2-RB | 422..1283 | 12..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:15:12 Download gff for
BS01533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21599277..21599338 | 12..73 | 98 | -> | Plus |
3L | 21609419..21609649 | 74..304 | 100 | -> | Plus |
3L | 21609719..21609886 | 305..472 | 100 | -> | Plus |
3L | 21611143..21611350 | 473..680 | 100 | -> | Plus |
3L | 21611995..21612185 | 681..873 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:55 Download gff for
BS01533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21592377..21592438 | 12..73 | 98 | -> | Plus |
arm_3L | 21602519..21602749 | 74..304 | 100 | -> | Plus |
arm_3L | 21602819..21602986 | 305..472 | 100 | -> | Plus |
arm_3L | 21604243..21604450 | 473..680 | 100 | -> | Plus |
arm_3L | 21605095..21605285 | 681..873 | 98 | | Plus |
BS01533.complete Sequence
1432 bp (1432 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634637
> BS01533.complete
GAAGTTATCAGTCGACATGCACATTCTACACCGCACCAACGACCATCAGT
TCGAGGATCAGAAGTTCATGATGGAACGCCTCAGTGGACATGGGAGTCTA
GGGCTGTCCAGCGGCAGTGCGGCGTACACAACGCATTCCGGCGGCCACAC
GGGACGCAGCGGACCGGCCACGGGGCACAGTGGGCACAGCAGCACCCATG
GATCGGCGGCCACCATGCACCACCAGTCGCTGCAGTCCGACTTCCAGCCG
CCGTACTTCCCGCCCCCCTTCCACCACTCCACCCAGAGTCCTCCCCAGCA
ACAGAACCATGGAGCCCTCGAGTACTTGGGCACGGATCCGTATGGCCAGC
CCCTCTCCTCGCTTCACCACGCCCCACTGCACCACTACAACCAGCTGGCG
GGACTGAGATCCACGCAGGACCAACTGGGGATCCACAGGACCCACAGAGA
GGCTGAGCTGCAGGGACATGTCACCCAATTGTCACATGGATTTCCGTACA
CGGATAGGAGGAGCGATTACGGCAGTGCAATATCCGCGGGAGCTGCCCAC
GGAACGAGACTTGGCCACGAGCACGAGTCCCTGGCGCTGCACCAAGCCCT
TCAAAACGCCGTCGATGATGTCCAAGCTCCTGCCCTCGACGACAATGTGG
CGTTCATGTCAGACTTGCCGCTCATAAAGAGCATGAAAAGCGGAAAAGAA
GCCGGGAACATTGGATCGGGTTCGCCCAGCGAGGTATTCTGTGCAGTTCC
TGGTCGCCTCAGTCTCCTATCGAGCACCTCGAAATACAAGGTCACCATAG
CCGAAGTACAGCGTCGACTCTCGCCGCCCGAGTGCTTGAACGCCTCCCTG
CTGGGCGGAGTGCTCCGAAGGGCTAAGAGCAAGAACGGAGGTCGCCTGTT
GAGGGAGAAGCTGGAAAAGATCGGCCTCAATCTACCCGCCGGTAGACGGA
AAGCGGCCAACGTCACCCTACTGACATCCTTGGTTGAGGGGGAGGCAACG
CACCTGGCCAAGGACTTTCACTTCGTTTGCGAAACCGAATTCCCCGCCAG
GCAGCTGGCCGAGTACATCGTGCGCCACCAAACGGAGCCGCAGGACTCGT
ACCGTCGAAAAGAGCTCATTCTCCACTCCCAGCAGATAACAAAAGAGCTT
ATGCAGATCCTGAGCCAAGATCGAACGACCCACTTTGGGACGAGATCACA
GCATCTGCTGGAACCATCGATGCAGCGCCACTTGACGCACTTCTCCCTGA
TAACGCACGGATTCGGATCGCCCGCGATTATGGCTGTTCTGCACGCTTTT
CAGACATTTTTAAACGAGTCATTAAACTACTTGGAAAAGCTGTACCCTTC
GAACGGCGGAGGGATGGTGTCGTCGTCGTTGGACAAAAGTAAAATTGACA
ACGAAAAGAAATGACGAAGCTTTCTAGACCAT
BS01533.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfAP-2-RB | 1398 | CG7807-PB | 1..1398 | 17..1414 | 6990 | 100 | Plus |
TfAP-2-RD | 1416 | CG7807-PD | 1..1416 | 17..1414 | 6775 | 98.7 | Plus |
TfAP-2-RC | 1380 | CG7807-PC | 39..1380 | 73..1414 | 6710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfAP-2-RB | 2219 | CG7807-RB | 425..1824 | 15..1414 | 7000 | 100 | Plus |
TfAP-2-RD | 2237 | CG7807-RD | 425..1842 | 15..1414 | 6785 | 98.7 | Plus |
TfAP-2-RC | 1805 | CG7807-RC | 69..1410 | 73..1414 | 6710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21612243..21612509 | 869..1135 | 1335 | 100 | Plus |
3L | 28110227 | 3L | 21609418..21609649 | 73..304 | 1160 | 100 | Plus |
3L | 28110227 | 3L | 21611143..21611351 | 473..681 | 1045 | 100 | Plus |
3L | 28110227 | 3L | 21611995..21612185 | 681..871 | 955 | 100 | Plus |
3L | 28110227 | 3L | 21609716..21609886 | 302..472 | 855 | 100 | Plus |
3L | 28110227 | 3L | 21612610..21612780 | 1133..1303 | 855 | 100 | Plus |
3L | 28110227 | 3L | 21612841..21612954 | 1301..1414 | 570 | 100 | Plus |
3L | 28110227 | 3L | 21599280..21599339 | 15..74 | 300 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 07:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X-element | 4740 | X-element ROXELEMENT 4740bp | 930..1003 | 867..938 | 112 | 64.9 | Plus |
BS01533.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:29:59 Download gff for
BS01533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2-RB | 1..1398 | 17..1414 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:44:57 Download gff for
BS01533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2-RB | 425..1822 | 17..1416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:19 Download gff for
BS01533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfAP-2-RB | 427..1824 | 17..1416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:29:59 Download gff for
BS01533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2-RB | 420..1828 | 12..1421 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:00:19 Download gff for
BS01533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfAP-2-RB | 427..1824 | 17..1416 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:00:19 Download gff for
BS01533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21599282..21599338 | 17..73 | 100 | -> | Plus |
3L | 21609419..21609649 | 74..304 | 100 | -> | Plus |
3L | 21609719..21609886 | 305..472 | 100 | -> | Plus |
3L | 21611143..21611350 | 473..680 | 100 | -> | Plus |
3L | 21611995..21612184 | 681..870 | 100 | -> | Plus |
3L | 21612245..21612509 | 871..1135 | 100 | -> | Plus |
3L | 21612613..21612780 | 1136..1303 | 100 | -> | Plus |
3L | 21612844..21612954 | 1304..1416 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:19 Download gff for
BS01533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21602819..21602986 | 305..472 | 100 | -> | Plus |
arm_3L | 21602519..21602749 | 74..304 | 100 | -> | Plus |
arm_3L | 21592382..21592438 | 17..73 | 100 | -> | Plus |
arm_3L | 21604243..21604450 | 473..680 | 100 | -> | Plus |
arm_3L | 21605095..21605284 | 681..870 | 100 | -> | Plus |
arm_3L | 21605345..21605609 | 871..1135 | 100 | -> | Plus |
arm_3L | 21605713..21605880 | 1136..1303 | 100 | -> | Plus |
arm_3L | 21605944..21606054 | 1304..1416 | 98 | | Plus |
BS01533.pep Sequence
Translation from 16 to 1413
> BS01533.pep
MHILHRTNDHQFEDQKFMMERLSGHGSLGLSSGSAAYTTHSGGHTGRSGP
ATGHSGHSSTHGSAATMHHQSLQSDFQPPYFPPPFHHSTQSPPQQQNHGA
LEYLGTDPYGQPLSSLHHAPLHHYNQLAGLRSTQDQLGIHRTHREAELQG
HVTQLSHGFPYTDRRSDYGSAISAGAAHGTRLGHEHESLALHQALQNAVD
DVQAPALDDNVAFMSDLPLIKSMKSGKEAGNIGSGSPSEVFCAVPGRLSL
LSSTSKYKVTIAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRLLREKLE
KIGLNLPAGRRKAANVTLLTSLVEGEATHLAKDFHFVCETEFPARQLAEY
IVRHQTEPQDSYRRKELILHSQQITKELMQILSQDRTTHFGTRSQHLLEP
SMQRHLTHFSLITHGFGSPAIMAVLHAFQTFLNESLNYLEKLYPSNGGGM
VSSSLDKSKIDNEKK*
BS01533.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfAP-2-PB | 465 | CG7807-PB | 1..465 | 1..465 | 2437 | 100 | Plus |
TfAP-2-PD | 471 | CG7807-PD | 1..471 | 1..465 | 2420 | 98.7 | Plus |
TfAP-2-PC | 459 | CG7807-PC | 8..459 | 14..465 | 2332 | 98.9 | Plus |
TfAP-2-PA | 461 | CG7807-PA | 14..461 | 18..465 | 2331 | 99.6 | Plus |
TfAP-2-PF | 465 | CG7807-PF | 8..465 | 14..465 | 2315 | 97.6 | Plus |