Clone BS01535 Report

Search the DGRC for BS01535

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:15
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG17829-RA
Protein status:BS01535.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01535.3prime Sequence

884 bp (750 high quality bases) assembled on 2005-11-29

> BS01535.3prime
ATGGTCTAGAAAGCTTCGTCACAGCTCCTCTGCTAGGCTGGGCAGGGAGA
TTACCACTTCACCCATCAGCTGCGCCTCGTTCGGATCATTCGAGACGATG
ATGCGCTCGAACTCGGTATTTGTGGGATCCACGATCTCGTAGCAGGATCC
TGTGCCCGGTTTCGCTAGCGAGTCGTTCACCTGCGGCGACAGTATTTGCT
GGGTCACCTCCAAGCTCTCGAGGCGCGTCGTCTCGAGGCGGTAGAACCCG
TTCTCGTCCACCCGGTAGGTGAATCTTTTGTGGCCCGAAGGCAGGCGGAA
GCCGTGCTTCTTCATAAGGTGAGCGGAGAGCGACTTGCCGCTCTTGAAGA
AGCGCTCGCAGCAGTGGCAGGCGTACAGAATGGGATTGTTGCCGTGCACC
TCGAGGAAGTGCCGTCGCATCTGCGTGTAGGTGCGTACAGAATAATGACA
GTCGGGATGCTCGCACTGGTGCACCGTCTTCGAGTGGACAATCTGAACGT
GCTTGGCCAGATCCGACTCCCGAACGCAGCGCGTGTCACACTCACTACAC
TTGAGCGGTTTGTCCTTGAGGTGGCGGTACCGAATGTGGGTGGTCAGCGA
GCTGGCCGAGCTGCAGGTCATGTCGCACATGGTGCACTTGTAGCAGTTAA
CGTGTCGCACCACGTGGCTCTTCAGCAGCTTCTTGGTGGCAAAGAACTTG
AAGCATTGGGCGCACTGGAAGCTGTTTGTGTTGTTTTCCGGCTGGCGTCT
AAGGTGATCAAAGAGCGTAGTCTTGGTGCGGAACAGTTCGCCGCAGTGGA
AGCAAGCCACCTGCTTCTTGTTGGAGTGGGTACTGATGTGCTCGATGAGG
CGGTACTTGTTGCCCATGTGCTTGTGGCACATGG

BS01535.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17829-PA 1404 CG17829-RA 539..1404 884..19 4330 100 Minus
CG17829-PC 1347 CG17829-RC 482..1347 884..19 4330 100 Minus
CG17829-PB 1404 CG17829-RB 539..1404 884..19 4330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17829-RB 2197 CG17829-RB 607..1476 884..15 4335 99.9 Minus
CG17829-RC 2199 CG17829-RC 609..1478 884..15 4335 99.9 Minus
CG17829-RA 2256 CG17829-RA 666..1535 884..15 4335 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 626898..627295 412..15 1975 99.7 Minus
X 23542271 X 626504..626820 728..412 1585 100 Minus
X 23542271 X 626207..626362 884..729 780 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:59:03 has no hits.

BS01535.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:11 Download gff for BS01535.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17829-PA 539..1404 19..884 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:42 Download gff for BS01535.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17829-PB 539..1404 19..884 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:30:11 Download gff for BS01535.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17829-RA 666..1535 15..884 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:12:04 Download gff for BS01535.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17829-RA 666..1535 15..884 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:12:04 Download gff for BS01535.3prime
Subject Subject Range Query Range Percent Splice Strand
X 626899..627295 15..411 99   Minus
X 626207..626362 729..884 100 -> Minus
X 626504..626820 412..728 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:30:11 Download gff for BS01535.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 520240..520395 729..884 100 -> Minus
arm_X 520537..520853 412..728 100 -> Minus
arm_X 520932..521328 15..411 99   Minus

BS01535.5prime Sequence

796 bp (698 high quality bases) assembled on 2005-11-29

> BS01535.5prime
GAAGTTATCAGTCGACATGCTAAGGCCCCAGTCATCAGTGCCTGCGCCTC
AGCCGCCTGGCAAGCGAAAGAAGCCCGCGGAACTGGAACTGACCTGCGGA
TGGCGCGACTGCCAGGAGATCTGCACTGGCGAGTGGAGCCTGAACGGGCA
TATTGGGGATCATCTGGAGCACTATGCGAAGGCCCAGGACGATCGGGGGG
CGCATGCGGAGCACACGGAGCATCAATGCACATGGAACTCCTGCGATTTC
CGCACCGAAAACCAGGTGGAGTTTGAACGGCATTCGTACTACCACGGCTA
CTACTTGAACCTGCTCCTGCAGGGGAAGCTGGAGTGCGATCTGCATCCGG
AAATCCCCGCCTGCACTGCTCCGGCCCGCCTCATGGAGAAGCTGCCCGCT
CTGGGCCAGAACTTTCGATGTGGTTGGACCGACTGTGAGAGGGAGTTCGT
TTCGATTGTGGAGTTCCAGGACCACATCGTTAAGCACGCCCTATTCGAGT
ACGACATACAGAAGACGCCGGAAGACGAGCGGCCCAAGACGATGTGCAAC
TGGGCCATGTGCCACAAGCACATGGGCAACAAGTACCGCCTCATCGAGCA
CATCAGTACCCACTCCAACAAGAAGCAGGTGGCTTGCTTCCACTGCGGCG
AACTGTTCCGCACCAAGACTACGCTCTTTGATCACCTTAGACGCCAGCCG
GAAAACAACACAAACAGCTTCCAGTGCGCCCAATGCTTCAAGTTCTTTGC
CACCAAGAAGCTGCTGAAGAGCCACGTGGTGCGACACGTTAACTGC

BS01535.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17829-PA 1404 CG17829-RA 1..780 17..796 3900 100 Plus
CG17829-PB 1404 CG17829-RB 1..780 17..796 3900 100 Plus
CG17829-PC 1347 CG17829-RC 247..723 320..796 2385 100 Plus
CG17829-PC 1347 CG17829-RC 1..250 17..266 1250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17829-RB 2197 CG17829-RB 68..848 16..796 3905 100 Plus
CG17829-RA 2256 CG17829-RA 127..907 16..796 3905 100 Plus
CG17829-RC 2199 CG17829-RC 374..850 320..796 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 625668..626362 16..710 3475 100 Plus
X 23542271 X 626504..626589 711..796 430 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:31:56 has no hits.

BS01535.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:12 Download gff for BS01535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17829-PA 1..780 17..796 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:43 Download gff for BS01535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17829-PB 1..780 17..796 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:08:27 Download gff for BS01535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17829-RA 127..907 16..796 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:37 Download gff for BS01535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17829-RA 127..907 16..796 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:37 Download gff for BS01535.5prime
Subject Subject Range Query Range Percent Splice Strand
X 625668..626362 16..710 100 -> Plus
X 626504..626589 711..796 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:08:27 Download gff for BS01535.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 519701..520395 16..710 100 -> Plus
arm_X 520537..520622 711..796 100   Plus

BS01535.complete Sequence

1438 bp (1438 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634638

> BS01535.complete
GAAGTTATCAGTCGACATGCTAAGGCCCCAGTCATCAGTGCCTGCGCCTC
AGCCGCCTGGCAAGCGAAAGAAGCCCGCGGAACTGGAACTGACCTGCGGA
TGGCGCGACTGCCAGGAGATCTGCACTGGCGAGTGGAGCCTGAACGGGCA
TATTGGGGATCATCTGGAGCACTATGCGAAGGCCCAGGACGATCGGGGGG
CGCATGCGGAGCACACGGAGCATCAATGCACATGGAACTCCTGCGATTTC
CGCACCGAAAACCAGGTGGAGTTTGAACGGCATTCGTACTACCACGGCTA
CTACTTGAACCTGCTCCTGCAGGGGAAGCTGGAGTGCGATCTGCATCCGG
AAATCCCCGCCTGCACTGCTCCGGCCCGCCTCATGGAGAAGCTGCCCGCT
CTGGGCCAGAACTTTCGATGTGGTTGGACCGACTGTGAGAGGGAGTTCGT
TTCGATTGTGGAGTTCCAGGACCACATCGTTAAGCACGCCCTATTCGAGT
ACGACATACAGAAGACGCCGGAAGACGAGCGGCCCAAGACGATGTGCAAC
TGGGCCATGTGCCACAAGCACATGGGCAACAAGTACCGCCTCATCGAGCA
CATCAGTACCCACTCCAACAAGAAGCAGGTGGCTTGCTTCCACTGCGGCG
AACTGTTCCGCACCAAGACTACGCTCTTTGATCACCTTAGACGCCAGCCG
GAAAACAACACAAACAGCTTCCAGTGCGCCCAATGCTTCAAGTTCTTTGC
CACCAAGAAGCTGCTGAAGAGCCACGTGGTGCGACACGTTAACTGCTACA
AGTGCACCATGTGCGACATGACCTGCAGCTCGGCCAGCTCGCTGACCACC
CACATTCGGTACCGCCACCTCAAGGACAAACCGCTCAAGTGTAGTGAGTG
TGACACGCGCTGCGTTCGGGAGTCGGATCTGGCCAAGCACGTTCAGATTG
TCCACTCGAAGACGGTGCACCAGTGCGAGCATCCCGACTGTCATTATTCT
GTACGCACCTACACGCAGATGCGACGGCACTTCCTCGAGGTGCACGGCAA
CAATCCCATTCTGTACGCCTGCCACTGCTGCGAGCGCTTCTTCAAGAGCG
GCAAGTCGCTCTCCGCTCACCTTATGAAGAAGCACGGCTTCCGCCTGCCT
TCGGGCCACAAAAGATTCACCTACCGGGTGGACGAGAACGGGTTCTACCG
CCTCGAGACGACGCGCCTCGAGAGCTTGGAGGTGACCCAGCAAATACTGT
CGCCGCAGGTGAACGACTCGCTAGCGAAACCGGGCACAGGATCCTGCTAC
GAGATCGTGGATCCCACAAATACCGAGTTCGAGCGCATCATCGTCTCGAA
TGATCCGAACGAGGCGCAGCTGATGGGTGAAGTGGTAATCTCCCTGCCCA
GCCTAGCAGAGGAGCTGTGACGAAGCTTTCTAGACCAT

BS01535.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17829-RB 1404 CG17829-PB 1..1404 17..1420 7020 100 Plus
CG17829-RA 1404 CG17829-PA 1..1404 17..1420 7020 100 Plus
CG17829-RC 1347 CG17829-PC 247..1347 320..1420 5505 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17829-RB 2197 CG17829-RB 68..1476 16..1424 7030 99.9 Plus
CG17829-RA 2256 CG17829-RA 127..1535 16..1424 7030 99.9 Plus
CG17829-RC 2199 CG17829-RC 374..1478 320..1424 5510 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 625668..626362 16..710 3475 100 Plus
X 23542271 X 626898..627295 1027..1424 1975 99.7 Plus
X 23542271 X 626504..626820 711..1027 1585 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:32:21 has no hits.

BS01535.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:43 Download gff for BS01535.complete
Subject Subject Range Query Range Percent Splice Strand
CG17829-RB 1..1404 17..1420 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:30 Download gff for BS01535.complete
Subject Subject Range Query Range Percent Splice Strand
CG17829-RB 46..1454 16..1424 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:38 Download gff for BS01535.complete
Subject Subject Range Query Range Percent Splice Strand
CG17829-RA 128..1532 17..1422 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:43 Download gff for BS01535.complete
Subject Subject Range Query Range Percent Splice Strand
CG17829-RB 46..1454 16..1424 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:18 Download gff for BS01535.complete
Subject Subject Range Query Range Percent Splice Strand
CG17829-RA 128..1532 17..1422 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:18 Download gff for BS01535.complete
Subject Subject Range Query Range Percent Splice Strand
X 626504..626820 711..1027 100 -> Plus
X 625669..626362 17..710 100 -> Plus
X 626899..627292 1028..1422 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:38 Download gff for BS01535.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 519702..520395 17..710 100 -> Plus
arm_X 520537..520853 711..1027 100 -> Plus
arm_X 520932..521325 1028..1422 99   Plus

BS01535.pep Sequence

Translation from 16 to 1419

> BS01535.pep
MLRPQSSVPAPQPPGKRKKPAELELTCGWRDCQEICTGEWSLNGHIGDHL
EHYAKAQDDRGAHAEHTEHQCTWNSCDFRTENQVEFERHSYYHGYYLNLL
LQGKLECDLHPEIPACTAPARLMEKLPALGQNFRCGWTDCEREFVSIVEF
QDHIVKHALFEYDIQKTPEDERPKTMCNWAMCHKHMGNKYRLIEHISTHS
NKKQVACFHCGELFRTKTTLFDHLRRQPENNTNSFQCAQCFKFFATKKLL
KSHVVRHVNCYKCTMCDMTCSSASSLTTHIRYRHLKDKPLKCSECDTRCV
RESDLAKHVQIVHSKTVHQCEHPDCHYSVRTYTQMRRHFLEVHGNNPILY
ACHCCERFFKSGKSLSAHLMKKHGFRLPSGHKRFTYRVDENGFYRLETTR
LESLEVTQQILSPQVNDSLAKPGTGSCYEIVDPTNTEFERIIVSNDPNEA
QLMGEVVISLPSLAEEL*

BS01535.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17829-PB 467 CG17829-PB 1..467 1..467 2598 100 Plus
CG17829-PA 467 CG17829-PA 1..467 1..467 2598 100 Plus
CG17829-PC 448 CG17829-PC 1..448 1..467 2462 95.9 Plus
crol-PH 686 CG14938-PH 211..438 133..385 253 27.5 Plus
crol-PB 891 CG14938-PB 355..643 63..385 253 25.4 Plus
crol-PH 686 CG14938-PH 187..371 181..369 197 26.3 Plus