Clone Sequence Records
BS01535.3prime Sequence
884 bp (750 high quality bases) assembled on 2005-11-29
> BS01535.3prime
ATGGTCTAGAAAGCTTCGTCACAGCTCCTCTGCTAGGCTGGGCAGGGAGA
TTACCACTTCACCCATCAGCTGCGCCTCGTTCGGATCATTCGAGACGATG
ATGCGCTCGAACTCGGTATTTGTGGGATCCACGATCTCGTAGCAGGATCC
TGTGCCCGGTTTCGCTAGCGAGTCGTTCACCTGCGGCGACAGTATTTGCT
GGGTCACCTCCAAGCTCTCGAGGCGCGTCGTCTCGAGGCGGTAGAACCCG
TTCTCGTCCACCCGGTAGGTGAATCTTTTGTGGCCCGAAGGCAGGCGGAA
GCCGTGCTTCTTCATAAGGTGAGCGGAGAGCGACTTGCCGCTCTTGAAGA
AGCGCTCGCAGCAGTGGCAGGCGTACAGAATGGGATTGTTGCCGTGCACC
TCGAGGAAGTGCCGTCGCATCTGCGTGTAGGTGCGTACAGAATAATGACA
GTCGGGATGCTCGCACTGGTGCACCGTCTTCGAGTGGACAATCTGAACGT
GCTTGGCCAGATCCGACTCCCGAACGCAGCGCGTGTCACACTCACTACAC
TTGAGCGGTTTGTCCTTGAGGTGGCGGTACCGAATGTGGGTGGTCAGCGA
GCTGGCCGAGCTGCAGGTCATGTCGCACATGGTGCACTTGTAGCAGTTAA
CGTGTCGCACCACGTGGCTCTTCAGCAGCTTCTTGGTGGCAAAGAACTTG
AAGCATTGGGCGCACTGGAAGCTGTTTGTGTTGTTTTCCGGCTGGCGTCT
AAGGTGATCAAAGAGCGTAGTCTTGGTGCGGAACAGTTCGCCGCAGTGGA
AGCAAGCCACCTGCTTCTTGTTGGAGTGGGTACTGATGTGCTCGATGAGG
CGGTACTTGTTGCCCATGTGCTTGTGGCACATGG
BS01535.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17829-PA | 1404 | CG17829-RA | 539..1404 | 884..19 | 4330 | 100 | Minus |
CG17829-PC | 1347 | CG17829-RC | 482..1347 | 884..19 | 4330 | 100 | Minus |
CG17829-PB | 1404 | CG17829-RB | 539..1404 | 884..19 | 4330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:59:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17829-RB | 2197 | CG17829-RB | 607..1476 | 884..15 | 4335 | 99.9 | Minus |
CG17829-RC | 2199 | CG17829-RC | 609..1478 | 884..15 | 4335 | 99.9 | Minus |
CG17829-RA | 2256 | CG17829-RA | 666..1535 | 884..15 | 4335 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:58:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 626898..627295 | 412..15 | 1975 | 99.7 | Minus |
X | 23542271 | X | 626504..626820 | 728..412 | 1585 | 100 | Minus |
X | 23542271 | X | 626207..626362 | 884..729 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:59:03 has no hits.
BS01535.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:11 Download gff for
BS01535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17829-PA | 539..1404 | 19..884 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:42 Download gff for
BS01535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17829-PB | 539..1404 | 19..884 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:30:11 Download gff for
BS01535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17829-RA | 666..1535 | 15..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:12:04 Download gff for
BS01535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17829-RA | 666..1535 | 15..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:12:04 Download gff for
BS01535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 626899..627295 | 15..411 | 99 | | Minus |
X | 626207..626362 | 729..884 | 100 | -> | Minus |
X | 626504..626820 | 412..728 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:30:11 Download gff for
BS01535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 520240..520395 | 729..884 | 100 | -> | Minus |
arm_X | 520537..520853 | 412..728 | 100 | -> | Minus |
arm_X | 520932..521328 | 15..411 | 99 | | Minus |
BS01535.5prime Sequence
796 bp (698 high quality bases) assembled on 2005-11-29
> BS01535.5prime
GAAGTTATCAGTCGACATGCTAAGGCCCCAGTCATCAGTGCCTGCGCCTC
AGCCGCCTGGCAAGCGAAAGAAGCCCGCGGAACTGGAACTGACCTGCGGA
TGGCGCGACTGCCAGGAGATCTGCACTGGCGAGTGGAGCCTGAACGGGCA
TATTGGGGATCATCTGGAGCACTATGCGAAGGCCCAGGACGATCGGGGGG
CGCATGCGGAGCACACGGAGCATCAATGCACATGGAACTCCTGCGATTTC
CGCACCGAAAACCAGGTGGAGTTTGAACGGCATTCGTACTACCACGGCTA
CTACTTGAACCTGCTCCTGCAGGGGAAGCTGGAGTGCGATCTGCATCCGG
AAATCCCCGCCTGCACTGCTCCGGCCCGCCTCATGGAGAAGCTGCCCGCT
CTGGGCCAGAACTTTCGATGTGGTTGGACCGACTGTGAGAGGGAGTTCGT
TTCGATTGTGGAGTTCCAGGACCACATCGTTAAGCACGCCCTATTCGAGT
ACGACATACAGAAGACGCCGGAAGACGAGCGGCCCAAGACGATGTGCAAC
TGGGCCATGTGCCACAAGCACATGGGCAACAAGTACCGCCTCATCGAGCA
CATCAGTACCCACTCCAACAAGAAGCAGGTGGCTTGCTTCCACTGCGGCG
AACTGTTCCGCACCAAGACTACGCTCTTTGATCACCTTAGACGCCAGCCG
GAAAACAACACAAACAGCTTCCAGTGCGCCCAATGCTTCAAGTTCTTTGC
CACCAAGAAGCTGCTGAAGAGCCACGTGGTGCGACACGTTAACTGC
BS01535.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17829-PA | 1404 | CG17829-RA | 1..780 | 17..796 | 3900 | 100 | Plus |
CG17829-PB | 1404 | CG17829-RB | 1..780 | 17..796 | 3900 | 100 | Plus |
CG17829-PC | 1347 | CG17829-RC | 247..723 | 320..796 | 2385 | 100 | Plus |
CG17829-PC | 1347 | CG17829-RC | 1..250 | 17..266 | 1250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:32:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17829-RB | 2197 | CG17829-RB | 68..848 | 16..796 | 3905 | 100 | Plus |
CG17829-RA | 2256 | CG17829-RA | 127..907 | 16..796 | 3905 | 100 | Plus |
CG17829-RC | 2199 | CG17829-RC | 374..850 | 320..796 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:31:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 625668..626362 | 16..710 | 3475 | 100 | Plus |
X | 23542271 | X | 626504..626589 | 711..796 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:31:56 has no hits.
BS01535.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:12 Download gff for
BS01535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17829-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:43 Download gff for
BS01535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17829-PB | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:08:27 Download gff for
BS01535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17829-RA | 127..907 | 16..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:37 Download gff for
BS01535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17829-RA | 127..907 | 16..796 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:37 Download gff for
BS01535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 625668..626362 | 16..710 | 100 | -> | Plus |
X | 626504..626589 | 711..796 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:08:27 Download gff for
BS01535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 519701..520395 | 16..710 | 100 | -> | Plus |
arm_X | 520537..520622 | 711..796 | 100 | | Plus |
BS01535.complete Sequence
1438 bp (1438 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634638
> BS01535.complete
GAAGTTATCAGTCGACATGCTAAGGCCCCAGTCATCAGTGCCTGCGCCTC
AGCCGCCTGGCAAGCGAAAGAAGCCCGCGGAACTGGAACTGACCTGCGGA
TGGCGCGACTGCCAGGAGATCTGCACTGGCGAGTGGAGCCTGAACGGGCA
TATTGGGGATCATCTGGAGCACTATGCGAAGGCCCAGGACGATCGGGGGG
CGCATGCGGAGCACACGGAGCATCAATGCACATGGAACTCCTGCGATTTC
CGCACCGAAAACCAGGTGGAGTTTGAACGGCATTCGTACTACCACGGCTA
CTACTTGAACCTGCTCCTGCAGGGGAAGCTGGAGTGCGATCTGCATCCGG
AAATCCCCGCCTGCACTGCTCCGGCCCGCCTCATGGAGAAGCTGCCCGCT
CTGGGCCAGAACTTTCGATGTGGTTGGACCGACTGTGAGAGGGAGTTCGT
TTCGATTGTGGAGTTCCAGGACCACATCGTTAAGCACGCCCTATTCGAGT
ACGACATACAGAAGACGCCGGAAGACGAGCGGCCCAAGACGATGTGCAAC
TGGGCCATGTGCCACAAGCACATGGGCAACAAGTACCGCCTCATCGAGCA
CATCAGTACCCACTCCAACAAGAAGCAGGTGGCTTGCTTCCACTGCGGCG
AACTGTTCCGCACCAAGACTACGCTCTTTGATCACCTTAGACGCCAGCCG
GAAAACAACACAAACAGCTTCCAGTGCGCCCAATGCTTCAAGTTCTTTGC
CACCAAGAAGCTGCTGAAGAGCCACGTGGTGCGACACGTTAACTGCTACA
AGTGCACCATGTGCGACATGACCTGCAGCTCGGCCAGCTCGCTGACCACC
CACATTCGGTACCGCCACCTCAAGGACAAACCGCTCAAGTGTAGTGAGTG
TGACACGCGCTGCGTTCGGGAGTCGGATCTGGCCAAGCACGTTCAGATTG
TCCACTCGAAGACGGTGCACCAGTGCGAGCATCCCGACTGTCATTATTCT
GTACGCACCTACACGCAGATGCGACGGCACTTCCTCGAGGTGCACGGCAA
CAATCCCATTCTGTACGCCTGCCACTGCTGCGAGCGCTTCTTCAAGAGCG
GCAAGTCGCTCTCCGCTCACCTTATGAAGAAGCACGGCTTCCGCCTGCCT
TCGGGCCACAAAAGATTCACCTACCGGGTGGACGAGAACGGGTTCTACCG
CCTCGAGACGACGCGCCTCGAGAGCTTGGAGGTGACCCAGCAAATACTGT
CGCCGCAGGTGAACGACTCGCTAGCGAAACCGGGCACAGGATCCTGCTAC
GAGATCGTGGATCCCACAAATACCGAGTTCGAGCGCATCATCGTCTCGAA
TGATCCGAACGAGGCGCAGCTGATGGGTGAAGTGGTAATCTCCCTGCCCA
GCCTAGCAGAGGAGCTGTGACGAAGCTTTCTAGACCAT
BS01535.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:32:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17829-RB | 1404 | CG17829-PB | 1..1404 | 17..1420 | 7020 | 100 | Plus |
CG17829-RA | 1404 | CG17829-PA | 1..1404 | 17..1420 | 7020 | 100 | Plus |
CG17829-RC | 1347 | CG17829-PC | 247..1347 | 320..1420 | 5505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:32:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17829-RB | 2197 | CG17829-RB | 68..1476 | 16..1424 | 7030 | 99.9 | Plus |
CG17829-RA | 2256 | CG17829-RA | 127..1535 | 16..1424 | 7030 | 99.9 | Plus |
CG17829-RC | 2199 | CG17829-RC | 374..1478 | 320..1424 | 5510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:32:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 625668..626362 | 16..710 | 3475 | 100 | Plus |
X | 23542271 | X | 626898..627295 | 1027..1424 | 1975 | 99.7 | Plus |
X | 23542271 | X | 626504..626820 | 711..1027 | 1585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:32:21 has no hits.
BS01535.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:43 Download gff for
BS01535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17829-RB | 1..1404 | 17..1420 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:30 Download gff for
BS01535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17829-RB | 46..1454 | 16..1424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:38 Download gff for
BS01535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17829-RA | 128..1532 | 17..1422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:43 Download gff for
BS01535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17829-RB | 46..1454 | 16..1424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:18 Download gff for
BS01535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17829-RA | 128..1532 | 17..1422 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:18 Download gff for
BS01535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 626504..626820 | 711..1027 | 100 | -> | Plus |
X | 625669..626362 | 17..710 | 100 | -> | Plus |
X | 626899..627292 | 1028..1422 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:38 Download gff for
BS01535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 519702..520395 | 17..710 | 100 | -> | Plus |
arm_X | 520537..520853 | 711..1027 | 100 | -> | Plus |
arm_X | 520932..521325 | 1028..1422 | 99 | | Plus |
BS01535.pep Sequence
Translation from 16 to 1419
> BS01535.pep
MLRPQSSVPAPQPPGKRKKPAELELTCGWRDCQEICTGEWSLNGHIGDHL
EHYAKAQDDRGAHAEHTEHQCTWNSCDFRTENQVEFERHSYYHGYYLNLL
LQGKLECDLHPEIPACTAPARLMEKLPALGQNFRCGWTDCEREFVSIVEF
QDHIVKHALFEYDIQKTPEDERPKTMCNWAMCHKHMGNKYRLIEHISTHS
NKKQVACFHCGELFRTKTTLFDHLRRQPENNTNSFQCAQCFKFFATKKLL
KSHVVRHVNCYKCTMCDMTCSSASSLTTHIRYRHLKDKPLKCSECDTRCV
RESDLAKHVQIVHSKTVHQCEHPDCHYSVRTYTQMRRHFLEVHGNNPILY
ACHCCERFFKSGKSLSAHLMKKHGFRLPSGHKRFTYRVDENGFYRLETTR
LESLEVTQQILSPQVNDSLAKPGTGSCYEIVDPTNTEFERIIVSNDPNEA
QLMGEVVISLPSLAEEL*
BS01535.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17829-PB | 467 | CG17829-PB | 1..467 | 1..467 | 2598 | 100 | Plus |
CG17829-PA | 467 | CG17829-PA | 1..467 | 1..467 | 2598 | 100 | Plus |
CG17829-PC | 448 | CG17829-PC | 1..448 | 1..467 | 2462 | 95.9 | Plus |
crol-PH | 686 | CG14938-PH | 211..438 | 133..385 | 253 | 27.5 | Plus |
crol-PB | 891 | CG14938-PB | 355..643 | 63..385 | 253 | 25.4 | Plus |
crol-PH | 686 | CG14938-PH | 187..371 | 181..369 | 197 | 26.3 | Plus |