Clone Sequence Records
BS01539.3prime Sequence
845 bp (791 high quality bases) assembled on 2005-11-29
> BS01539.3prime
ATGGTCTAGAAAGCTTCGCTAACTTCCTCCCCCCAAAATGGCCGATATGC
TGAAGCCCTTGCTCCTTGTAGATGGTTGTTCCAGTGGCTGTTCCTGCGTA
GACTGCTCCAACGTGCTCGTTTCACTGCCCACATCCAGTTCGAGTTCTTC
GGCTCCCGACTCATCGGAAATGAGATCCGCGCCAGAAACGCCTGGTGGAA
GGTTCAGGCCAGGATGTGGGCCCAAACCCGCCTGTAGCATCGCTGCTGGT
GGATACATAGGTGAGGCCTGAATCGCTCCTCCATACTCATGGGGTCTCCC
AAAGTAGGTACATGCCAAATCCACAAGCGATGGCCTCAGCAGGCTCTGCA
TATTCTGCTGAAAGTGCTGCATAAAAACGCTGGAGGCACTCCTCGCCTGG
AGGGGATGCGGATGCGAATGCGAATGTAGATGGGGCGGTGGAGAGCCCAG
GGCCAAAGAACTGGCGCCAGGCACCGACTGATCGTCCAGCGATGATGATA
AGGAGCAGGCTGAGCCATTTGATCTCAGGCGCTTGATTTGCGGACCATCC
GAATCGCCGATCGACGATGTTCCTCCGGCTGTCTCACCGCCTCCTTTCGT
TGGCGACATGTCAGACTCGGATTGGGACTGAGAATGGGATAGTGACGGCG
ACTGATCTTGATCCTCGCCCGTTGGCGATGAAGACATCTTGCGTTTGCAG
CGCGATTGTCCCGTTTCGCGGAAGCCCTTGGCAAACGGATTGTTGTCGAT
CTTCAGCTTGGTGATGCGATCGTTCTGGTAGGCTGTCACGGCCACGAACT
CCGTCTCGGCGAAACACAAGGCCTGTTGTGGGGCCCAGGGAATCT
BS01539.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5187-PB | 1410 | Doc2-RB | 616..1410 | 813..19 | 3950 | 99.8 | Minus |
CG5187-PA | 1410 | Doc2-RA | 616..1410 | 813..19 | 3950 | 99.8 | Minus |
CG5133-PA | 1176 | Doc1-RA | 631..744 | 807..694 | 220 | 87.7 | Minus |
CG5093-PA | 1275 | Doc3-RA | 670..719 | 768..719 | 175 | 94 | Minus |
CG5187-PB | 1410 | Doc2-RB | 584..611 | 845..818 | 140 | 100 | Minus |
CG5187-PA | 1410 | Doc2-RA | 584..611 | 845..818 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc2-RA | 1945 | CG5187-RA | 939..1765 | 845..19 | 4075 | 99.6 | Minus |
Doc3-RA | 1671 | CG5093-RA | 715..874 | 845..686 | 410 | 84.5 | Minus |
Doc1-RB | 1339 | CG5133-RB | 574..722 | 842..694 | 385 | 84.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9012866..9013624 | 19..777 | 3780 | 99.9 | Plus |
3L | 28110227 | 3L | 9014492..9014562 | 775..845 | 295 | 94.4 | Plus |
3L | 28110227 | 3L | 9044342..9044425 | 777..694 | 270 | 88.1 | Minus |
3L | 28110227 | 3L | 9006361..9006452 | 777..686 | 265 | 85.9 | Minus |
2L | 23513712 | 2L | 5466038..5466111 | 789..716 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:20:54 has no hits.
BS01539.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:13 Download gff for
BS01539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5187-PB | 584..1410 | 19..845 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:44 Download gff for
BS01539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5187-PA | 584..1410 | 19..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:09:13 Download gff for
BS01539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc2-RA | 939..1772 | 11..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:19 Download gff for
BS01539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc2-RA | 939..1772 | 11..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:19 Download gff for
BS01539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9012859..9013621 | 11..774 | 99 | <- | Plus |
3L | 9014492..9014562 | 775..845 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:09:13 Download gff for
BS01539.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9005959..9006721 | 11..774 | 99 | <- | Plus |
arm_3L | 9007592..9007662 | 775..845 | 97 | | Plus |
BS01539.5prime Sequence
748 bp (699 high quality bases) assembled on 2005-11-29
> BS01539.5prime
GAAGTTATCAGTCGACATGATCACCATGAACGAGCTGGTGGATCTGCGCA
TGCAGCAGCACATAGCACACGAGATCTATCGCCAGCAGATCATGCAGCGC
ATACCAGATCCGTTTCCGCCGATGCTGCCAATTCCGATGCCACGGCACGT
GATCATGCCACCTCGAGTCACGTTGCCCGGCGTGGAGATGACCCTGCAGA
ACGACGATCTATGGAAGCAGTTCCATCAAATTGGCACGGAAATGATCATC
ACCAAGAGTGGCAGACGCATGTTCCCCTCGATGCGACTAAGTGTTTCCGG
CTTGGAGGACGAGAGCAACTATTGCGTGCTCCTCGAGATGGTACCCATTG
GCGACTGCCGCTACAAGTTCTCCGGCTCCCAGTGGGTTCCAGCCGGAGGA
GCCGAGCCGCAAAGTCCCCAGCGGATGTACCTGCATCCGGACAGTCCGGC
CACCGGTGCCCATTGGCAGGCGCAGCCCATACTGTTCAATAAGGTCAAGT
TGACCAATAACACGCTGGATAACAGCGGCCATATTGTCCTGGCCAGCATG
CACAAGTATCAGCCGCGTCTGCACGTCATACGCACCGCTGATCTGGCGCA
GATTCCCTGGGCCCCACAACAGGCCTTTGTGTTCGCCGAGACGGAGTTCG
TGGCCGTGACAGCCTACCAGAACGATCGCATCACCAAGCTGAAGATCGAC
AACAATCCGTTTGCCAAGGGCTTCCGCGAAACGGGACAATCGCGCTGC
BS01539.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5187-PB | 1410 | Doc2-RB | 1..732 | 17..748 | 3660 | 100 | Plus |
CG5187-PA | 1410 | Doc2-RA | 1..732 | 17..748 | 3660 | 100 | Plus |
CG5133-PA | 1176 | Doc1-RA | 312..461 | 319..468 | 475 | 92.6 | Plus |
CG5093-PA | 1275 | Doc3-RA | 312..446 | 319..453 | 275 | 88.1 | Plus |
CG5093-PA | 1275 | Doc3-RA | 493..587 | 500..594 | 250 | 90.5 | Plus |
CG5133-PA | 1176 | Doc1-RA | 631..722 | 638..729 | 210 | 89.1 | Plus |
CG5093-PA | 1275 | Doc3-RA | 670..719 | 677..726 | 175 | 94 | Plus |
CG5133-PA | 1176 | Doc1-RA | 211..279 | 218..286 | 170 | 89.8 | Plus |
CG5133-PA | 1176 | Doc1-RA | 52..101 | 68..117 | 150 | 92 | Plus |
CG5093-PA | 1275 | Doc3-RA | 235..278 | 242..285 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:02:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc2-RA | 1945 | CG5187-RA | 355..1087 | 16..748 | 3665 | 100 | Plus |
Doc1-RA | 1526 | CG5133-RA | 173..906 | 24..748 | 1420 | 80.2 | Plus |
Doc1-RB | 1339 | CG5133-RB | 145..719 | 174..748 | 1315 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9014708..9014977 | 532..263 | 1350 | 100 | Minus |
3L | 28110227 | 3L | 9017929..9018088 | 264..105 | 800 | 100 | Minus |
3L | 28110227 | 3L | 9043385..9043655 | 262..532 | 710 | 84.1 | Plus |
3L | 28110227 | 3L | 9014492..9014629 | 670..533 | 690 | 100 | Minus |
3L | 28110227 | 3L | 9005813..9006034 | 303..524 | 495 | 81.5 | Plus |
3L | 28110227 | 3L | 9018801..9018892 | 107..16 | 460 | 100 | Minus |
3L | 28110227 | 3L | 9006155..9006296 | 529..670 | 410 | 85.9 | Plus |
3L | 28110227 | 3L | 9013544..9013624 | 748..668 | 405 | 100 | Minus |
3L | 28110227 | 3L | 9044342..9044422 | 668..748 | 255 | 87.7 | Plus |
3L | 28110227 | 3L | 9041547..9041639 | 24..116 | 240 | 83.9 | Plus |
3L | 28110227 | 3L | 9006361..9006435 | 668..742 | 225 | 86.7 | Plus |
3L | 28110227 | 3L | 9043731..9043861 | 540..670 | 220 | 77.9 | Plus |
2L | 23513712 | 2L | 5466038..5466111 | 656..729 | 190 | 83.8 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:02:04 has no hits.
BS01539.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:14 Download gff for
BS01539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5187-PB | 1..732 | 17..748 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:46 Download gff for
BS01539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5187-PB | 1..732 | 17..748 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:55:45 Download gff for
BS01539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc2-RA | 350..1087 | 9..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:37:42 Download gff for
BS01539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc2-RA | 350..1087 | 9..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:37:42 Download gff for
BS01539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9013544..9013621 | 671..748 | 100 | <- | Minus |
3L | 9014492..9014629 | 533..670 | 100 | <- | Minus |
3L | 9014708..9014975 | 265..532 | 100 | <- | Minus |
3L | 9017929..9018085 | 108..264 | 100 | <- | Minus |
3L | 9018801..9018895 | 9..107 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:55:45 Download gff for
BS01539.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9011029..9011185 | 108..264 | 100 | <- | Minus |
arm_3L | 9011901..9011995 | 9..107 | 95 | | Minus |
arm_3L | 9006644..9006721 | 671..748 | 100 | <- | Minus |
arm_3L | 9007592..9007729 | 533..670 | 100 | <- | Minus |
arm_3L | 9007808..9008075 | 265..532 | 100 | <- | Minus |
BS01539.complete Sequence
1444 bp (1444 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634639
> BS01539.complete
GAAGTTATCAGTCGACATGATCACCATGAACGAGCTGGTGGATCTGCGCA
TGCAGCAGCACATAGCACACGAGATCTATCGCCAGCAGATCATGCAGCGC
ATACCAGATCCGTTTCCGCCGATGCTGCCAATTCCGATGCCACGGCACGT
GATCATGCCACCTCGAGTCACGTTGCCCGGCGTGGAGATGACCCTGCAGA
ACGACGATCTATGGAAGCAGTTCCATCAAATTGGCACGGAAATGATCATC
ACCAAGAGTGGCAGACGCATGTTCCCCTCGATGCGACTAAGTGTTTCCGG
CTTGGAGGACGAGAGCAACTATTGCGTGCTCCTCGAGATGGTACCCATTG
GCGACTGCCGCTACAAGTTCTCCGGCTCCCAGTGGGTTCCAGCCGGAGGA
GCCGAGCCGCAAAGTCCCCAGCGGATGTACCTGCATCCGGACAGTCCGGC
CACCGGTGCCCATTGGCAGGCGCAGCCCATACTGTTCAATAAGGTCAAGT
TGACCAATAACACGCTGGATAACAGCGGCCATATTGTCCTGGCCAGCATG
CACAAGTATCAGCCGCGTCTGCACGTCATACGCACCGCTGATCTGGCGCA
GATTCCCTGGGCCCCACAACAGGCCTTTGTGTTCGCCGAGACGGAGTTCG
TGGCCGTGACAGCCTACCAGAACGATCGCATCACCAAGCTGAAGATCGAC
AACAATCCGTTTGCCAAGGGCTTCCGCGAAACGGGACAATCGCGCTGCAA
ACGCAAGATGTCTTCATCGCCAACGGGCGAGGATCAAGATCAGTCGCCGT
CACTATCCCATTCTCAGTCCCAATCCGAGTCTGACATGTCGCCAACGAAA
GGAGGCGGTGAGACAGCCGGAGGAACATCGTCGATCGGCGATTCGGATGG
TCCGCAAATCAAGCGCCTGAGATCAAATGGCTCAGCCTGCTCCTTATCAT
CATCGCTGGACGATCAGTCGGTGCCTGGCGCCAGTTCTTTGGCCCTGGGC
TCTCCACCGCCCCATCTACATTCGCATTCGCATCCGCATCCCCTCCAGGC
GAGGAGTGCCTCCAGCGTTTTTATGCAGCACTTTCAGCAGAATATGCAGA
GCCTGCTGAGGCCATCGCTTGTGGATTTGGCATGTACCTACTTTGGGAGA
CCCCATGAGTATGGAGGAGCGATTCAGGCCTCACCTATGTATCCACCAGC
AGCGATGCTACAGGCGGGTTTGGGCCCACATCCTGGCCTGAACCTTCCAC
CAGGCGTTTCTGGCGCGGATCTCATTTCCGATGAGTCGGGAGCCGAAGAA
CTCGAACTGGATGTGGGCAGTGAAACGAGCACGTTGGAGCAGTCTACGCA
GGAACAGCCACTGGAACAACCATCTACAAGGAGCAAGGGCTTCAGCATAT
CGGCCATTTTGGGGGGAGGAAGTTAGCGAAGCTTTCTAGACCAT
BS01539.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc2-RA | 1410 | CG5187-PA | 1..1410 | 17..1426 | 7035 | 99.9 | Plus |
Doc1-RA | 1176 | CG5133-PA | 8..744 | 24..751 | 1400 | 79.6 | Plus |
Doc1-RB | 1071 | CG5133-PB | 62..639 | 174..751 | 1330 | 82 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc2-RA | 1945 | CG5187-RA | 355..1765 | 16..1426 | 7040 | 99.9 | Plus |
Doc1-RA | 1526 | CG5133-RA | 173..909 | 24..751 | 1400 | 79.6 | Plus |
Doc1-RB | 1339 | CG5133-RB | 145..722 | 174..751 | 1330 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9012866..9013624 | 1426..668 | 3780 | 99.9 | Minus |
3L | 28110227 | 3L | 9014708..9014977 | 532..263 | 1350 | 100 | Minus |
3L | 28110227 | 3L | 9017929..9018088 | 264..105 | 800 | 100 | Minus |
3L | 28110227 | 3L | 9043385..9043655 | 262..532 | 710 | 84.1 | Plus |
3L | 28110227 | 3L | 9014492..9014629 | 670..533 | 690 | 100 | Minus |
3L | 28110227 | 3L | 9005813..9006034 | 303..524 | 495 | 81.5 | Plus |
3L | 28110227 | 3L | 9018801..9018892 | 107..16 | 460 | 100 | Minus |
3L | 28110227 | 3L | 9006155..9006296 | 529..670 | 410 | 85.9 | Plus |
3L | 28110227 | 3L | 9044342..9044425 | 668..751 | 270 | 88.1 | Plus |
3L | 28110227 | 3L | 9006361..9006452 | 668..759 | 265 | 85.9 | Plus |
3L | 28110227 | 3L | 9041547..9041639 | 24..116 | 240 | 83.9 | Plus |
3L | 28110227 | 3L | 9043731..9043861 | 540..670 | 220 | 77.9 | Plus |
2L | 23513712 | 2L | 5466038..5466111 | 656..729 | 190 | 83.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:54:33 has no hits.
BS01539.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:44 Download gff for
BS01539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc2-RA | 1..1410 | 17..1426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:32 Download gff for
BS01539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc2-RA | 344..1766 | 9..1434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:17 Download gff for
BS01539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc2-RA | 356..1767 | 17..1428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:44 Download gff for
BS01539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc2-RA | 344..1766 | 9..1434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:49 Download gff for
BS01539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc2-RA | 356..1767 | 17..1428 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:49 Download gff for
BS01539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9014492..9014629 | 533..670 | 100 | <- | Minus |
3L | 9014708..9014975 | 265..532 | 100 | <- | Minus |
3L | 9017929..9018085 | 108..264 | 100 | <- | Minus |
3L | 9018801..9018891 | 17..107 | 100 | | Minus |
3L | 9012864..9013621 | 671..1428 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:17 Download gff for
BS01539.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9007592..9007729 | 533..670 | 100 | <- | Minus |
arm_3L | 9005964..9006721 | 671..1428 | 99 | <- | Minus |
arm_3L | 9007808..9008075 | 265..532 | 100 | <- | Minus |
arm_3L | 9011029..9011185 | 108..264 | 100 | <- | Minus |
arm_3L | 9011901..9011991 | 17..107 | 100 | | Minus |
BS01539.pep Sequence
Translation from 16 to 1425
> BS01539.pep
MITMNELVDLRMQQHIAHEIYRQQIMQRIPDPFPPMLPIPMPRHVIMPPR
VTLPGVEMTLQNDDLWKQFHQIGTEMIITKSGRRMFPSMRLSVSGLEDES
NYCVLLEMVPIGDCRYKFSGSQWVPAGGAEPQSPQRMYLHPDSPATGAHW
QAQPILFNKVKLTNNTLDNSGHIVLASMHKYQPRLHVIRTADLAQIPWAP
QQAFVFAETEFVAVTAYQNDRITKLKIDNNPFAKGFRETGQSRCKRKMSS
SPTGEDQDQSPSLSHSQSQSESDMSPTKGGGETAGGTSSIGDSDGPQIKR
LRSNGSACSLSSSLDDQSVPGASSLALGSPPPHLHSHSHPHPLQARSASS
VFMQHFQQNMQSLLRPSLVDLACTYFGRPHEYGGAIQASPMYPPAAMLQA
GLGPHPGLNLPPGVSGADLISDESGAEELELDVGSETSTLEQSTQEQPLE
QPSTRSKGFSISAILGGGS*
BS01539.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc2-PA | 469 | CG5187-PA | 1..469 | 1..469 | 2466 | 100 | Plus |
Doc1-PA | 391 | CG5133-PA | 1..389 | 1..465 | 1177 | 54.7 | Plus |
Doc3-PA | 424 | CG5093-PA | 1..255 | 1..252 | 1065 | 77.2 | Plus |
Doc1-PB | 356 | CG5133-PB | 1..354 | 36..465 | 1026 | 52.9 | Plus |
bi-PG | 971 | CG3578-PG | 296..535 | 9..259 | 626 | 46.7 | Plus |