Clone BS01539 Report

Search the DGRC for BS01539

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:15
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptDoc2-RA
Protein status:BS01539.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01539.3prime Sequence

845 bp (791 high quality bases) assembled on 2005-11-29

> BS01539.3prime
ATGGTCTAGAAAGCTTCGCTAACTTCCTCCCCCCAAAATGGCCGATATGC
TGAAGCCCTTGCTCCTTGTAGATGGTTGTTCCAGTGGCTGTTCCTGCGTA
GACTGCTCCAACGTGCTCGTTTCACTGCCCACATCCAGTTCGAGTTCTTC
GGCTCCCGACTCATCGGAAATGAGATCCGCGCCAGAAACGCCTGGTGGAA
GGTTCAGGCCAGGATGTGGGCCCAAACCCGCCTGTAGCATCGCTGCTGGT
GGATACATAGGTGAGGCCTGAATCGCTCCTCCATACTCATGGGGTCTCCC
AAAGTAGGTACATGCCAAATCCACAAGCGATGGCCTCAGCAGGCTCTGCA
TATTCTGCTGAAAGTGCTGCATAAAAACGCTGGAGGCACTCCTCGCCTGG
AGGGGATGCGGATGCGAATGCGAATGTAGATGGGGCGGTGGAGAGCCCAG
GGCCAAAGAACTGGCGCCAGGCACCGACTGATCGTCCAGCGATGATGATA
AGGAGCAGGCTGAGCCATTTGATCTCAGGCGCTTGATTTGCGGACCATCC
GAATCGCCGATCGACGATGTTCCTCCGGCTGTCTCACCGCCTCCTTTCGT
TGGCGACATGTCAGACTCGGATTGGGACTGAGAATGGGATAGTGACGGCG
ACTGATCTTGATCCTCGCCCGTTGGCGATGAAGACATCTTGCGTTTGCAG
CGCGATTGTCCCGTTTCGCGGAAGCCCTTGGCAAACGGATTGTTGTCGAT
CTTCAGCTTGGTGATGCGATCGTTCTGGTAGGCTGTCACGGCCACGAACT
CCGTCTCGGCGAAACACAAGGCCTGTTGTGGGGCCCAGGGAATCT

BS01539.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5187-PB 1410 Doc2-RB 616..1410 813..19 3950 99.8 Minus
CG5187-PA 1410 Doc2-RA 616..1410 813..19 3950 99.8 Minus
CG5133-PA 1176 Doc1-RA 631..744 807..694 220 87.7 Minus
CG5093-PA 1275 Doc3-RA 670..719 768..719 175 94 Minus
CG5187-PB 1410 Doc2-RB 584..611 845..818 140 100 Minus
CG5187-PA 1410 Doc2-RA 584..611 845..818 140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Doc2-RA 1945 CG5187-RA 939..1765 845..19 4075 99.6 Minus
Doc3-RA 1671 CG5093-RA 715..874 845..686 410 84.5 Minus
Doc1-RB 1339 CG5133-RB 574..722 842..694 385 84.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9012866..9013624 19..777 3780 99.9 Plus
3L 28110227 3L 9014492..9014562 775..845 295 94.4 Plus
3L 28110227 3L 9044342..9044425 777..694 270 88.1 Minus
3L 28110227 3L 9006361..9006452 777..686 265 85.9 Minus
2L 23513712 2L 5466038..5466111 789..716 190 83.8 Minus
Blast to na_te.dros performed on 2015-02-10 17:20:54 has no hits.

BS01539.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:13 Download gff for BS01539.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5187-PB 584..1410 19..845 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:44 Download gff for BS01539.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5187-PA 584..1410 19..845 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:09:13 Download gff for BS01539.3prime
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 939..1772 11..845 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:19 Download gff for BS01539.3prime
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 939..1772 11..845 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:19 Download gff for BS01539.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9012859..9013621 11..774 99 <- Plus
3L 9014492..9014562 775..845 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:09:13 Download gff for BS01539.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9005959..9006721 11..774 99 <- Plus
arm_3L 9007592..9007662 775..845 97   Plus

BS01539.5prime Sequence

748 bp (699 high quality bases) assembled on 2005-11-29

> BS01539.5prime
GAAGTTATCAGTCGACATGATCACCATGAACGAGCTGGTGGATCTGCGCA
TGCAGCAGCACATAGCACACGAGATCTATCGCCAGCAGATCATGCAGCGC
ATACCAGATCCGTTTCCGCCGATGCTGCCAATTCCGATGCCACGGCACGT
GATCATGCCACCTCGAGTCACGTTGCCCGGCGTGGAGATGACCCTGCAGA
ACGACGATCTATGGAAGCAGTTCCATCAAATTGGCACGGAAATGATCATC
ACCAAGAGTGGCAGACGCATGTTCCCCTCGATGCGACTAAGTGTTTCCGG
CTTGGAGGACGAGAGCAACTATTGCGTGCTCCTCGAGATGGTACCCATTG
GCGACTGCCGCTACAAGTTCTCCGGCTCCCAGTGGGTTCCAGCCGGAGGA
GCCGAGCCGCAAAGTCCCCAGCGGATGTACCTGCATCCGGACAGTCCGGC
CACCGGTGCCCATTGGCAGGCGCAGCCCATACTGTTCAATAAGGTCAAGT
TGACCAATAACACGCTGGATAACAGCGGCCATATTGTCCTGGCCAGCATG
CACAAGTATCAGCCGCGTCTGCACGTCATACGCACCGCTGATCTGGCGCA
GATTCCCTGGGCCCCACAACAGGCCTTTGTGTTCGCCGAGACGGAGTTCG
TGGCCGTGACAGCCTACCAGAACGATCGCATCACCAAGCTGAAGATCGAC
AACAATCCGTTTGCCAAGGGCTTCCGCGAAACGGGACAATCGCGCTGC

BS01539.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5187-PB 1410 Doc2-RB 1..732 17..748 3660 100 Plus
CG5187-PA 1410 Doc2-RA 1..732 17..748 3660 100 Plus
CG5133-PA 1176 Doc1-RA 312..461 319..468 475 92.6 Plus
CG5093-PA 1275 Doc3-RA 312..446 319..453 275 88.1 Plus
CG5093-PA 1275 Doc3-RA 493..587 500..594 250 90.5 Plus
CG5133-PA 1176 Doc1-RA 631..722 638..729 210 89.1 Plus
CG5093-PA 1275 Doc3-RA 670..719 677..726 175 94 Plus
CG5133-PA 1176 Doc1-RA 211..279 218..286 170 89.8 Plus
CG5133-PA 1176 Doc1-RA 52..101 68..117 150 92 Plus
CG5093-PA 1275 Doc3-RA 235..278 242..285 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
Doc2-RA 1945 CG5187-RA 355..1087 16..748 3665 100 Plus
Doc1-RA 1526 CG5133-RA 173..906 24..748 1420 80.2 Plus
Doc1-RB 1339 CG5133-RB 145..719 174..748 1315 82.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9014708..9014977 532..263 1350 100 Minus
3L 28110227 3L 9017929..9018088 264..105 800 100 Minus
3L 28110227 3L 9043385..9043655 262..532 710 84.1 Plus
3L 28110227 3L 9014492..9014629 670..533 690 100 Minus
3L 28110227 3L 9005813..9006034 303..524 495 81.5 Plus
3L 28110227 3L 9018801..9018892 107..16 460 100 Minus
3L 28110227 3L 9006155..9006296 529..670 410 85.9 Plus
3L 28110227 3L 9013544..9013624 748..668 405 100 Minus
3L 28110227 3L 9044342..9044422 668..748 255 87.7 Plus
3L 28110227 3L 9041547..9041639 24..116 240 83.9 Plus
3L 28110227 3L 9006361..9006435 668..742 225 86.7 Plus
3L 28110227 3L 9043731..9043861 540..670 220 77.9 Plus
2L 23513712 2L 5466038..5466111 656..729 190 83.8 Plus
Blast to na_te.dros performed on 2015-02-02 12:02:04 has no hits.

BS01539.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:14 Download gff for BS01539.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5187-PB 1..732 17..748 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:46 Download gff for BS01539.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5187-PB 1..732 17..748 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:55:45 Download gff for BS01539.5prime
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 350..1087 9..748 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:37:42 Download gff for BS01539.5prime
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 350..1087 9..748 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:37:42 Download gff for BS01539.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9013544..9013621 671..748 100 <- Minus
3L 9014492..9014629 533..670 100 <- Minus
3L 9014708..9014975 265..532 100 <- Minus
3L 9017929..9018085 108..264 100 <- Minus
3L 9018801..9018895 9..107 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:55:45 Download gff for BS01539.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9011029..9011185 108..264 100 <- Minus
arm_3L 9011901..9011995 9..107 95   Minus
arm_3L 9006644..9006721 671..748 100 <- Minus
arm_3L 9007592..9007729 533..670 100 <- Minus
arm_3L 9007808..9008075 265..532 100 <- Minus

BS01539.complete Sequence

1444 bp (1444 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634639

> BS01539.complete
GAAGTTATCAGTCGACATGATCACCATGAACGAGCTGGTGGATCTGCGCA
TGCAGCAGCACATAGCACACGAGATCTATCGCCAGCAGATCATGCAGCGC
ATACCAGATCCGTTTCCGCCGATGCTGCCAATTCCGATGCCACGGCACGT
GATCATGCCACCTCGAGTCACGTTGCCCGGCGTGGAGATGACCCTGCAGA
ACGACGATCTATGGAAGCAGTTCCATCAAATTGGCACGGAAATGATCATC
ACCAAGAGTGGCAGACGCATGTTCCCCTCGATGCGACTAAGTGTTTCCGG
CTTGGAGGACGAGAGCAACTATTGCGTGCTCCTCGAGATGGTACCCATTG
GCGACTGCCGCTACAAGTTCTCCGGCTCCCAGTGGGTTCCAGCCGGAGGA
GCCGAGCCGCAAAGTCCCCAGCGGATGTACCTGCATCCGGACAGTCCGGC
CACCGGTGCCCATTGGCAGGCGCAGCCCATACTGTTCAATAAGGTCAAGT
TGACCAATAACACGCTGGATAACAGCGGCCATATTGTCCTGGCCAGCATG
CACAAGTATCAGCCGCGTCTGCACGTCATACGCACCGCTGATCTGGCGCA
GATTCCCTGGGCCCCACAACAGGCCTTTGTGTTCGCCGAGACGGAGTTCG
TGGCCGTGACAGCCTACCAGAACGATCGCATCACCAAGCTGAAGATCGAC
AACAATCCGTTTGCCAAGGGCTTCCGCGAAACGGGACAATCGCGCTGCAA
ACGCAAGATGTCTTCATCGCCAACGGGCGAGGATCAAGATCAGTCGCCGT
CACTATCCCATTCTCAGTCCCAATCCGAGTCTGACATGTCGCCAACGAAA
GGAGGCGGTGAGACAGCCGGAGGAACATCGTCGATCGGCGATTCGGATGG
TCCGCAAATCAAGCGCCTGAGATCAAATGGCTCAGCCTGCTCCTTATCAT
CATCGCTGGACGATCAGTCGGTGCCTGGCGCCAGTTCTTTGGCCCTGGGC
TCTCCACCGCCCCATCTACATTCGCATTCGCATCCGCATCCCCTCCAGGC
GAGGAGTGCCTCCAGCGTTTTTATGCAGCACTTTCAGCAGAATATGCAGA
GCCTGCTGAGGCCATCGCTTGTGGATTTGGCATGTACCTACTTTGGGAGA
CCCCATGAGTATGGAGGAGCGATTCAGGCCTCACCTATGTATCCACCAGC
AGCGATGCTACAGGCGGGTTTGGGCCCACATCCTGGCCTGAACCTTCCAC
CAGGCGTTTCTGGCGCGGATCTCATTTCCGATGAGTCGGGAGCCGAAGAA
CTCGAACTGGATGTGGGCAGTGAAACGAGCACGTTGGAGCAGTCTACGCA
GGAACAGCCACTGGAACAACCATCTACAAGGAGCAAGGGCTTCAGCATAT
CGGCCATTTTGGGGGGAGGAAGTTAGCGAAGCTTTCTAGACCAT

BS01539.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
Doc2-RA 1410 CG5187-PA 1..1410 17..1426 7035 99.9 Plus
Doc1-RA 1176 CG5133-PA 8..744 24..751 1400 79.6 Plus
Doc1-RB 1071 CG5133-PB 62..639 174..751 1330 82 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
Doc2-RA 1945 CG5187-RA 355..1765 16..1426 7040 99.9 Plus
Doc1-RA 1526 CG5133-RA 173..909 24..751 1400 79.6 Plus
Doc1-RB 1339 CG5133-RB 145..722 174..751 1330 82 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9012866..9013624 1426..668 3780 99.9 Minus
3L 28110227 3L 9014708..9014977 532..263 1350 100 Minus
3L 28110227 3L 9017929..9018088 264..105 800 100 Minus
3L 28110227 3L 9043385..9043655 262..532 710 84.1 Plus
3L 28110227 3L 9014492..9014629 670..533 690 100 Minus
3L 28110227 3L 9005813..9006034 303..524 495 81.5 Plus
3L 28110227 3L 9018801..9018892 107..16 460 100 Minus
3L 28110227 3L 9006155..9006296 529..670 410 85.9 Plus
3L 28110227 3L 9044342..9044425 668..751 270 88.1 Plus
3L 28110227 3L 9006361..9006452 668..759 265 85.9 Plus
3L 28110227 3L 9041547..9041639 24..116 240 83.9 Plus
3L 28110227 3L 9043731..9043861 540..670 220 77.9 Plus
2L 23513712 2L 5466038..5466111 656..729 190 83.8 Plus
Blast to na_te.dros performed on 2014-11-27 13:54:33 has no hits.

BS01539.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:44 Download gff for BS01539.complete
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 1..1410 17..1426 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:32 Download gff for BS01539.complete
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 344..1766 9..1434 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:17 Download gff for BS01539.complete
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 356..1767 17..1428 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:44 Download gff for BS01539.complete
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 344..1766 9..1434 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:49 Download gff for BS01539.complete
Subject Subject Range Query Range Percent Splice Strand
Doc2-RA 356..1767 17..1428 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:49 Download gff for BS01539.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9014492..9014629 533..670 100 <- Minus
3L 9014708..9014975 265..532 100 <- Minus
3L 9017929..9018085 108..264 100 <- Minus
3L 9018801..9018891 17..107 100   Minus
3L 9012864..9013621 671..1428 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:17 Download gff for BS01539.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9007592..9007729 533..670 100 <- Minus
arm_3L 9005964..9006721 671..1428 99 <- Minus
arm_3L 9007808..9008075 265..532 100 <- Minus
arm_3L 9011029..9011185 108..264 100 <- Minus
arm_3L 9011901..9011991 17..107 100   Minus

BS01539.pep Sequence

Translation from 16 to 1425

> BS01539.pep
MITMNELVDLRMQQHIAHEIYRQQIMQRIPDPFPPMLPIPMPRHVIMPPR
VTLPGVEMTLQNDDLWKQFHQIGTEMIITKSGRRMFPSMRLSVSGLEDES
NYCVLLEMVPIGDCRYKFSGSQWVPAGGAEPQSPQRMYLHPDSPATGAHW
QAQPILFNKVKLTNNTLDNSGHIVLASMHKYQPRLHVIRTADLAQIPWAP
QQAFVFAETEFVAVTAYQNDRITKLKIDNNPFAKGFRETGQSRCKRKMSS
SPTGEDQDQSPSLSHSQSQSESDMSPTKGGGETAGGTSSIGDSDGPQIKR
LRSNGSACSLSSSLDDQSVPGASSLALGSPPPHLHSHSHPHPLQARSASS
VFMQHFQQNMQSLLRPSLVDLACTYFGRPHEYGGAIQASPMYPPAAMLQA
GLGPHPGLNLPPGVSGADLISDESGAEELELDVGSETSTLEQSTQEQPLE
QPSTRSKGFSISAILGGGS*

BS01539.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
Doc2-PA 469 CG5187-PA 1..469 1..469 2466 100 Plus
Doc1-PA 391 CG5133-PA 1..389 1..465 1177 54.7 Plus
Doc3-PA 424 CG5093-PA 1..255 1..252 1065 77.2 Plus
Doc1-PB 356 CG5133-PB 1..354 36..465 1026 52.9 Plus
bi-PG 971 CG3578-PG 296..535 9..259 626 46.7 Plus