Clone BS01542 Report

Search the DGRC for BS01542

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:15
Well:42
Vector:pDNR-Dual
Associated Gene/Transcriptap-RA
Protein status:BS01542.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01542.3prime Sequence

871 bp (718 high quality bases) assembled on 2005-11-29

> BS01542.3prime
ATGGTCTAGAAAGCTTCGTTAGTCCAAGTTAAGTGGCGGTGTGCTGTTCG
GTCCTCCCAATATAAACGACGTAGGACTGTGCACGGAGATGCTGTCGAGG
TCCAGAGCGCCTTCGCCCTTCTCCAGCAGGCCGCTGCCATCCTGCTTCAT
CATCATGCGGCGCCATTTGGCCCTTGCATTTTGAAACCAGACCTGTAGGA
CCCTCTTTGGTAAACCAGTTTTCTGTGACAATTGTTTTAGATCCTTTGCA
TCAGGGTTATGATTAATGGCAAAGTAGGACTTCATGGTACGCAGCTGGTG
ATGCTTAAACGAGGTTCGCATTCGTTTGGTGCGCGACGAGGAGCTTAGGT
GCGAGCCTCGGCCAAAGTCCACGTACTCAGTGTTGAGATCTATGTTAGCG
GTGAACGCCTCGATGTCCTTGGGCTTGCGCTTGCGGGGCCTGCCCTTTTG
ACGAGCTGGCTGCGGCAGTCCGTTGATTACGTGGGACGCGGGCACAAAGA
TGCCCGTAGGAACAATGCTCCGACTAGGGTCCGAGTGCGGGCTCGAGGAG
TCGTTGTGGGGTGAGCCGAACTGGGCGCTGTACGGGTAGGTGGCGCTCAT
ACTGGATGAGGCGGTATCCCCCTCCCTGGCTATGCTGTAGTGGGTCCTGC
AGTAGATGAGGGCGTCGATGATGCCGTACTGGTCTCCCTTTGTCAGTGGC
GTGTGGCAGACAGTGCAGCAGAAGCAGTTGACGTGAAAAACAAGATTTCT
GGCGCGCATGACCAGCTCGTTGGAGCTGATGGAGGCCAGGCAGCGCGAGC
ATCGGCGAGTACCAAAAAACTATAATAATCGTTTTTTGCATAAATGTTGC
CGTCACGTGAGTAGCATGAGG

BS01542.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8376-PA 1410 ap-RA 610..1410 819..19 4005 100 Minus
CG8376-PB 741 ap-RB 1..741 759..19 3705 100 Minus
CG8376-PA 1410 ap-RA 557..588 871..840 160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
ap-RE 2149 CG8376-RE 587..1442 871..17 4210 99.6 Minus
ap-RC 3089 CG8376-RC 1527..2382 871..17 4210 99.6 Minus
ap-RA 4114 CG8376-RA 1530..2385 871..17 4210 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5708611..5708869 390..648 1295 100 Plus
2R 25286936 2R 5708181..5708381 191..391 1005 100 Plus
2R 25286936 2R 5707931..5708108 17..194 890 100 Plus
2R 25286936 2R 5708925..5709098 646..819 870 100 Plus
2R 25286936 2R 5716649..5716700 820..871 215 94.2 Plus
Blast to na_te.dros performed on 2015-02-10 17:19:28 has no hits.

BS01542.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:10:20 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:53 Download gff for BS01542.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8376-PA 557..1410 19..871 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:09:07 Download gff for BS01542.3prime
Subject Subject Range Query Range Percent Splice Strand
ap-RA 1530..2391 12..871 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:09 Download gff for BS01542.3prime
Subject Subject Range Query Range Percent Splice Strand
ap-RA 1530..2391 12..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:09 Download gff for BS01542.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5707925..5708106 12..192 98 <- Plus
2R 5708183..5708379 193..389 100 <- Plus
2R 5708611..5708867 390..646 100 <- Plus
2R 5708926..5709099 647..819 99 <- Plus
2R 5716649..5716700 820..871 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:09:07 Download gff for BS01542.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1595430..1595611 12..192 98 <- Plus
arm_2R 1595688..1595884 193..389 100 <- Plus
arm_2R 1596116..1596372 390..646 100 <- Plus
arm_2R 1596431..1596604 647..819 99 <- Plus
arm_2R 1604154..1604205 820..871 96   Plus

BS01542.5prime Sequence

913 bp (693 high quality bases) assembled on 2005-11-29

> BS01542.5prime
GAAGTTATCAGTCGACATGGGCGTCTGCACCGAGGAGCGCCCTGTGATGC
ATTGGCAGCAGAGCGCAAGATTTCTTGGGCCCGGCGCAAGGGAGAAAAGT
CCAACACCACCTGTAGCACATCAAGGGAGCAATCAATGTGGCAGTGCTGC
AGGTGCAAATAACAATCACCCATTGTTCCGCGCGTGCTCCTCATCCTCGT
GTCCAGATATTTGTGATCATAGTACAAAGCCATTTGGCAACGCTTACGGC
ACCGAGTCATTTAGAAGCTACGAAACAGCCGATCGTGCTACCTTTGAGGA
CTCAGCCGCCAAATTCTCCATCAGCCGCAGTCGAACAGACTGCACGGAGG
TCAGCGACGAGACGACGTCGGGCATATCATTCAAGACCGAACCCTTCGGA
CCGCCCAGCAGTCCCGAGTCCACAAGCGATAGCAAAATAACGCGCAACCT
CGACGACTGCTCCGGCTGCGGACGTCAGATACAGGATCGCTTCTACCTCT
CCGCTGTGGAAAAACGGTGGCATGCAAGTTGCCTACAGTGCTACGCCTGT
CGGCAGCCGCTGGAACGGGAATCCTCATGCTACTCACGTGACGGCAACAT
TTATTGCAAAAACGATTATTATAGTTTTTTTGGTACTCGCCGATGCTCGC
GCTGCCTGGCCTCCATCAGCTCCAACGAGCTGGTCATGCGCGCCAGAAAT
CTTGTTTTTCACGTCAACTGCTTCTGCTGCACTGTCTGCCACACGCCACT
GACAAAGGGAGACCAGTACGGCATCATCGACGCCCTCATCTACTGCAGGA
CCCACTACAGCATAGCCAGGGAGGGGGATACCGCCTCATCCAGTATGAGC
GCCACCTACCCGTACAGCGGCCAGTTCGGCTCACCCCACAACGACTCCTC
GAGCCCGCACTCG

BS01542.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8376-PA 1410 ap-RA 1..897 17..913 4460 99.8 Plus
CG8376-PB 741 ap-RB 1..228 686..913 1115 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
ap-RA 4114 CG8376-RA 972..1870 15..913 4480 99.9 Plus
ap-RC 3089 CG8376-RC 972..1867 15..913 4425 99.6 Plus
ap-RE 2149 CG8376-RE 73..927 59..913 4260 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5717281..5717500 485..266 1100 100 Minus
2R 25286936 2R 5717555..5717767 267..55 1065 100 Minus
2R 25286936 2R 5708925..5709105 799..619 890 99.4 Minus
2R 25286936 2R 5716649..5716790 624..483 710 100 Minus
2R 25286936 2R 5708753..5708869 913..797 570 99.1 Minus
2R 25286936 2R 5725821..5725861 55..15 205 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:33:53 has no hits.

BS01542.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:10:21 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:55 Download gff for BS01542.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8376-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:21:36 Download gff for BS01542.5prime
Subject Subject Range Query Range Percent Splice Strand
ap-RA 966..1870 10..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:21:46 Download gff for BS01542.5prime
Subject Subject Range Query Range Percent Splice Strand
ap-RA 966..1870 10..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:21:46 Download gff for BS01542.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5716649..5716788 485..624 100 <- Minus
2R 5717282..5717498 268..484 100 <- Minus
2R 5717555..5717766 56..267 100 <- Minus
2R 5725821..5725867 10..55 95   Minus
2R 5708753..5708867 799..913 99 <- Minus
2R 5708926..5709099 625..798 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:21:36 Download gff for BS01542.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1605060..1605271 56..267 100 <- Minus
arm_2R 1613326..1613372 10..55 95   Minus
arm_2R 1596258..1596372 799..913 99 <- Minus
arm_2R 1596431..1596604 625..798 100 <- Minus
arm_2R 1604154..1604293 485..624 100 <- Minus
arm_2R 1604787..1605003 268..484 100 <- Minus

BS01542.complete Sequence

1444 bp (1444 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634640

> BS01542.complete
GAAGTTATCAGTCGACATGGGCGTCTGCACCGAGGAGCGCCCTGTGATGC
ATTGGCAGCAGAGCGCAAGATTTCTTGGGCCCGGCGCAAGGGAGAAAAGT
CCAACACCACCTGTAGCACATCAAGGGAGCAATCAATGTGGCAGTGCTGC
AGGTGCAAATAACAATCACCCATTGTTCCGCGCGTGCTCCTCATCCTCGT
GTCCAGATATTTGTGATCATAGTACAAAGCCATTTGGCAACGCTTACGGC
ACCGAGTCATTTAGAAGCTACGAAACAGCCGATCGTGCTACCTTTGAGGA
CTCAGCCGCCAAATTCTCCATCAGCCGCAGTCGAACAGACTGCACGGAGG
TCAGCGACGAGACGACGTCGGGCATATCATTCAAGACCGAACCCTTCGGA
CCGCCCAGCAGTCCCGAGTCCACAAGCGATAGCAAAATAACGCGCAACCT
CGACGACTGCTCCGGCTGCGGACGTCAGATACAGGATCGCTTCTACCTCT
CCGCTGTGGAAAAACGGTGGCATGCAAGTTGCCTACAGTGCTACGCCTGT
CGGCAGCCGCTGGAACGGGAATCCTCATGCTACTCACGTGACGGCAACAT
TTATTGCAAAAACGATTATTATAGTTTTTTTGGTACTCGCCGATGCTCGC
GCTGCCTGGCCTCCATCAGCTCCAACGAGCTGGTCATGCGCGCCAGAAAT
CTTGTTTTTCACGTCAACTGCTTCTGCTGCACTGTCTGCCACACGCCACT
GACAAAGGGAGACCAGTACGGCATCATCGACGCCCTCATCTACTGCAGGA
CCCACTACAGCATAGCCAGGGAGGGGGATACCGCCTCATCCAGTATGAGC
GCCACCTACCCGTACAGCGCCCAGTTCGGCTCACCCCACAACGACTCCTC
GAGCCCGCACTCGGACCCTAGTCGGAGCATTGTTCCTACGGGCATCTTTG
TGCCCGCGTCCCACGTAATCAACGGACTGCCGCAGCCAGCTCGTCAAAAG
GGCAGGCCCCGCAAGCGCAAGCCCAAGGACATCGAGGCGTTCACCGCTAA
CATAGATCTCAACACTGAGTACGTGGACTTTGGCCGAGGCTCGCACCTAA
GCTCCTCGTCGCGCACCAAACGAATGCGAACCTCGTTTAAGCATCACCAG
CTGCGTACCATGAAGTCCTACTTTGCCATTAATCATAACCCTGATGCAAA
GGATCTAAAACAATTGTCACAGAAAACTGGTTTACCAAAGAGGGTCCTAC
AGGTCTGGTTTCAAAATGCAAGGGCCAAATGGCGCCGCATGATGATGAAG
CAGGATGGCAGCGGCCTGCTGGAGAAGGGCGAAGGCGCTCTGGACCTCGA
CAGCATCTCCGTGCACAGTCCTACGTCGTTTATATTGGGAGGACCGAACA
GCACACCGCCACTTAACTTGGACTAACGAAGCTTTCTAGACCAT

BS01542.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
ap-RA 1410 CG8376-PA 1..1410 17..1426 7050 100 Plus
ap-RC 1407 CG8376-PC 1..1407 17..1426 6970 99.8 Plus
ap-RE 741 CG8376-PE 1..741 686..1426 3705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
ap-RA 4114 CG8376-RA 972..2385 15..1428 7070 100 Plus
ap-RC 3089 CG8376-RC 972..2382 15..1428 6990 99.8 Plus
ap-RE 2149 CG8376-RE 73..1442 59..1428 6850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5708611..5708869 1055..797 1295 100 Minus
2R 25286936 2R 5717281..5717500 485..266 1100 100 Minus
2R 25286936 2R 5717555..5717767 267..55 1065 100 Minus
2R 25286936 2R 5708181..5708381 1254..1054 1005 100 Minus
2R 25286936 2R 5707931..5708108 1428..1251 890 100 Minus
2R 25286936 2R 5708925..5709105 799..619 890 99.4 Minus
2R 25286936 2R 5716649..5716790 624..483 710 100 Minus
2R 25286936 2R 5725821..5725861 55..15 205 100 Minus
Blast to na_te.dros performed on 2014-11-28 07:51:20 has no hits.

BS01542.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:45 Download gff for BS01542.complete
Subject Subject Range Query Range Percent Splice Strand
ap-RA 1..1410 17..1426 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:18 Download gff for BS01542.complete
Subject Subject Range Query Range Percent Splice Strand
ap-RA 972..2383 17..1428 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:23 Download gff for BS01542.complete
Subject Subject Range Query Range Percent Splice Strand
ap-RA 974..2385 17..1428 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:45 Download gff for BS01542.complete
Subject Subject Range Query Range Percent Splice Strand
ap-RA 964..2389 10..1433 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:05:19 Download gff for BS01542.complete
Subject Subject Range Query Range Percent Splice Strand
ap-RA 974..2385 17..1428 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:05:19 Download gff for BS01542.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5707931..5708106 1253..1428 100 <- Minus
2R 5708183..5708379 1056..1252 100 <- Minus
2R 5708611..5708867 799..1055 100 <- Minus
2R 5708926..5709099 625..798 100 <- Minus
2R 5716649..5716788 485..624 100 <- Minus
2R 5717282..5717498 268..484 100 <- Minus
2R 5717555..5717766 56..267 100 <- Minus
2R 5725821..5725859 17..55 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:23 Download gff for BS01542.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1595436..1595611 1253..1428 100 <- Minus
arm_2R 1595688..1595884 1056..1252 100 <- Minus
arm_2R 1596116..1596372 799..1055 100 <- Minus
arm_2R 1596431..1596604 625..798 100 <- Minus
arm_2R 1604154..1604293 485..624 100 <- Minus
arm_2R 1604787..1605003 268..484 100 <- Minus
arm_2R 1605060..1605271 56..267 100 <- Minus
arm_2R 1613326..1613364 17..55 100   Minus

BS01542.pep Sequence

Translation from 16 to 1425

> BS01542.pep
MGVCTEERPVMHWQQSARFLGPGAREKSPTPPVAHQGSNQCGSAAGANNN
HPLFRACSSSSCPDICDHSTKPFGNAYGTESFRSYETADRATFEDSAAKF
SISRSRTDCTEVSDETTSGISFKTEPFGPPSSPESTSDSKITRNLDDCSG
CGRQIQDRFYLSAVEKRWHASCLQCYACRQPLERESSCYSRDGNIYCKND
YYSFFGTRRCSRCLASISSNELVMRARNLVFHVNCFCCTVCHTPLTKGDQ
YGIIDALIYCRTHYSIAREGDTASSSMSATYPYSAQFGSPHNDSSSPHSD
PSRSIVPTGIFVPASHVINGLPQPARQKGRPRKRKPKDIEAFTANIDLNT
EYVDFGRGSHLSSSSRTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL
SQKTGLPKRVLQVWFQNARAKWRRMMMKQDGSGLLEKGEGALDLDSISVH
SPTSFILGGPNSTPPLNLD*

BS01542.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
ap-PA 469 CG8376-PA 1..469 1..469 2530 100 Plus
ap-PC 468 CG8376-PC 1..468 1..469 2513 99.8 Plus
ap-PE 246 CG8376-PE 1..246 224..469 1311 100 Plus
ap-PB 246 CG8376-PB 1..246 224..469 1311 100 Plus
tup-PB 465 CG10619-PB 49..331 143..452 391 31.5 Plus