Clone Sequence Records
BS01543.3prime Sequence
889 bp (720 high quality bases) assembled on 2005-11-29
> BS01543.3prime
ATGGTCTAGAAAGCTTCGTCACGTGTAGTCAGTGCGCCAGGTGCCCATCG
AACTGAGACCCAAGTGGTACGGCTGCGAGTGGGGCACCACCGCTCCGCTG
AGAGAGCCGGCGGTGGAGAAGCCGCCCTGGAGTCCGCTCGAGGCTCCCAA
AGCGCCCATGCCGCCGGTGTACCAGCTGCCGTGCATGTGCGCATGTGCCG
GATGCAGTCCGCTCGAGAGGTGTCCATGTTGTGCCATGGAGGCAGAGAAG
CCACCGCCGAATCCCTTCGAGGGATCCAGCGGCTTGAAGTCGCCCATGCC
CAGGTGGCCACCGATTGGCAGGCAGCCACCACCGAGACCCTTCTTCTTTT
TGGACTTGGAGCTCAGCTTGCGATTACGCGTCTGAATGCCCTCCTTTTTC
ATGGTGAGTGGACGATTGACATTGTGAAGCTTATAGTACAATCCGCAGGC
GTTGCACACGGGTTCACCGCTGGCATTGCGTCGCCAAAGGGTTGTGGTTG
TGGTCTTGCAGTTGGCGCAGGATGTGCCCGCCCTTTTGGCCGCACTCTGC
AGCGATTGCAGGGTCAGTCTTCGCTTTGGCTTGATCAGGGGTCGGTTCTG
GCCGTTCATTTTGTAGTACAGGCCACAGGCGTTGCACAGATAGTGTCCCG
TTCCATCGCGTCGCCACAGTGGCGTCGATGTGGCGCCACAATTCACACAC
TCGCGTCCCTCTTCGCGCTGCTTGGGCGTCGACGTGTGGGTGGTGCCGCT
GCCGGAGGATCCGCTCGCACTGCCGTTCTGGATCGACGGCTTGATATCCA
ACGCACAGCTGGCGTCCGTTAGTGAGGTAGAGCCCGTGGGCTGCTGGTGC
ATAAACGCGTTCATCACGGCCTGGTACTCGGATGGGACG
BS01543.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9656-PA | 1461 | grn-RA | 595..1461 | 885..19 | 4310 | 99.8 | Minus |
CG3978-PB | 1467 | pnr-RB | 380..422 | 668..626 | 165 | 95.3 | Minus |
CG3978-PA | 1623 | pnr-RA | 536..578 | 668..626 | 165 | 95.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:23:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grn-RA | 3451 | CG9656-RA | 1015..1881 | 885..19 | 4320 | 99.9 | Minus |
grn-RC | 4090 | CG9656-RC | 1828..2520 | 711..19 | 3465 | 100 | Minus |
grn-RB | 4090 | CG9656-RB | 1828..2520 | 711..19 | 3465 | 100 | Minus |
grn-RC | 4090 | CG9656-RC | 1015..1189 | 885..711 | 860 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:23:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8149269..8149458 | 45..234 | 950 | 100 | Plus |
3R | 32079331 | 3R | 8149547..8149733 | 234..420 | 935 | 100 | Plus |
3R | 32079331 | 3R | 8167371..8167533 | 711..873 | 800 | 99.4 | Plus |
3R | 32079331 | 3R | 8160963..8161110 | 565..712 | 740 | 100 | Plus |
3R | 32079331 | 3R | 8153256..8153402 | 419..565 | 735 | 100 | Plus |
3R | 32079331 | 3R | 16039052..16039185 | 711..578 | 370 | 85.1 | Minus |
3R | 32079331 | 3R | 16000639..16000763 | 711..587 | 250 | 80 | Minus |
3R | 32079331 | 3R | 16001776..16001916 | 522..382 | 225 | 77.3 | Minus |
3R | 32079331 | 3R | 16018006..16018161 | 521..366 | 210 | 75.6 | Minus |
3R | 32079331 | 3R | 16039351..16039436 | 465..380 | 190 | 81.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:23:42 has no hits.
BS01543.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:22 Download gff for
BS01543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-PA | 591..1461 | 19..889 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:56 Download gff for
BS01543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9656-PA | 591..1461 | 19..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:41:15 Download gff for
BS01543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-RA | 1011..1887 | 13..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:42:07 Download gff for
BS01543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-RA | 1011..1887 | 13..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:42:07 Download gff for
BS01543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8148932..8148964 | 13..45 | 93 | <- | Plus |
3R | 8149270..8149457 | 46..233 | 100 | <- | Plus |
3R | 8149547..8149733 | 234..420 | 100 | <- | Plus |
3R | 8153258..8153401 | 421..564 | 100 | <- | Plus |
3R | 8160963..8161108 | 565..710 | 100 | <- | Plus |
3R | 8167371..8167530 | 711..870 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:41:15 Download gff for
BS01543.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3974654..3974686 | 13..45 | 93 | <- | Plus |
arm_3R | 3974992..3975179 | 46..233 | 100 | <- | Plus |
arm_3R | 3975269..3975455 | 234..420 | 100 | <- | Plus |
arm_3R | 3978980..3979123 | 421..564 | 100 | <- | Plus |
arm_3R | 3986685..3986830 | 565..710 | 100 | <- | Plus |
arm_3R | 3993093..3993252 | 711..870 | 99 | <- | Plus |
BS01543.5prime Sequence
889 bp (744 high quality bases) assembled on 2005-11-29
> BS01543.5prime
GAAGTTATCAGTCGACATGGATATGACCTCAACAGCGGAGGCTGCCGCTC
GCAGCTGGTACGATAGTCCGCGTTTAGGCGGCGGCGGCTCCTCGGGCGGT
GGCAATGGGGGCGGCGTCTCGCCCCAAACGAACGGCCTTGGCAGCGCCGG
TAGCAGCCTGGCCCACAGCCACCACAGCCTCTCCAGCGGCGCCAGCTCGG
CGGGCAGCAGCGTGGGCGTGGGCTCTGCTCTTGGCGGCGGCGGCGGATCC
GGACTGGACACCAGCGACATGAGCGCCTTCTACGCGCTGGAGAGCAACGG
ACACCACCGGCGCTACTATCCCAGCTATCATCAGCACACATCCCGCATGC
CCTCCACCCATGCCTCGCCTCAAGTGTGCCGGCCGCACTTCCACACCCCG
CTGAGTCCCTGGCTGACCAGCGAGCACAAGTCCTTCGCCCCCGCCAGCGC
CTGGAGCATGGGTCAGTTCGCCTGCCCGCAGGAGCCGCAGGTGGAGCACA
AGCTGGGCCAGATGGGCCAGAGCCACCAGACGACGGCCGCCGGCCAGCAT
TCGTTCCCCTTCCCGCCGACGCCGCCAAAGGACTCCACGCCCGACTCCGT
GCAAACCGGTCCATCCGAGTACCAGGCCGTGATGAACGCGTTTATGCACC
AGCAGGCCACGGGCTCTACCTCACTAACGGACGCCAGCTGTGCGTTGGAT
ATCAAGCCGTCGATCCAGAACGGCAGTGCGAGCGGATCCTCCGGCAGCGG
CACCACCCACACGTCGACGCCCAAGCAGCGCGAAGAGGGACGCGAGTGTG
TGAATTGTGGGCGCACATCGACGCCACTGTGGCGACGCGATGGAACGGGA
CACTATCTGTTGCACGCCTGTGGCCTGTACTACAAAATG
BS01543.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9656-PA | 1461 | grn-RA | 1..794 | 17..810 | 3970 | 100 | Plus |
CG9656-PA | 1461 | grn-RA | 798..844 | 814..860 | 235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grn-RA | 3451 | CG9656-RA | 416..1293 | 12..889 | 4285 | 99.4 | Plus |
grn-RC | 4090 | CG9656-RC | 416..1189 | 12..785 | 3855 | 99.9 | Plus |
grn-RB | 4090 | CG9656-RB | 416..1189 | 12..785 | 3855 | 99.9 | Plus |
grn-RC | 4090 | CG9656-RC | 1828..1932 | 785..889 | 435 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:03:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8179355..8179681 | 338..12 | 1620 | 99.7 | Minus |
3R | 32079331 | 3R | 8167830..8168117 | 626..339 | 1440 | 100 | Minus |
3R | 32079331 | 3R | 8167371..8167533 | 785..623 | 815 | 100 | Minus |
3R | 32079331 | 3R | 8161005..8161110 | 889..784 | 440 | 94.3 | Minus |
3R | 32079331 | 3R | 16039052..16039147 | 785..880 | 225 | 82.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:03:03 has no hits.
BS01543.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:23 Download gff for
BS01543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:57 Download gff for
BS01543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9656-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:54:20 Download gff for
BS01543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-RA | 405..1293 | 1..889 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:25 Download gff for
BS01543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-RA | 405..1293 | 1..889 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:25 Download gff for
BS01543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8161005..8161108 | 786..889 | 96 | <- | Minus |
3R | 8167371..8167530 | 626..785 | 100 | <- | Minus |
3R | 8167831..8168117 | 339..625 | 100 | <- | Minus |
3R | 8179355..8179689 | 1..338 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:54:20 Download gff for
BS01543.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3986727..3986830 | 786..889 | 96 | <- | Minus |
arm_3R | 3993093..3993252 | 626..785 | 100 | <- | Minus |
arm_3R | 3993553..3993839 | 339..625 | 100 | <- | Minus |
arm_3R | 4005077..4005411 | 1..338 | 98 | | Minus |
BS01543.complete Sequence
1495 bp (1495 high quality bases) assembled on 2005-10-17
GenBank Submission: FJ634641
> BS01543.complete
GAAGTTATCAGTCGACATGGATATGACCTCAACAGCGGAGGCTGCCGCTC
GCAGCTGGTACGATAGTCCGCGTTTAGGCGGCGGCGGCTCCTCGGGCGGT
GGCAATGGGGGCGGCGTCTCGCCCCAAACGAACGGCCTTGGCAGCGCCGG
TAGCAGCCTGGCCCACAGCCACCACAGCCTCTCCAGCGGCGCCAGCTCGG
CGGGCAGCAGCGTGGGCGTGGGCTCTGCTCTTGGCGGCGGCGGCGGATCC
GGACTGGACACCAGCGACATGAGCGCCTTCTACGCGCTGGAGAGCAACGG
ACACCACCGGCGCTACTATCCCAGCTATCATCAGCACACATCCCGCATGC
CCTCCACCCATGCCTCGCCTCAAGTGTGCCGGCCGCACTTCCACACCCCG
CTGAGTCCCTGGCTGACCAGCGAGCACAAGTCCTTCGCCCCCGCCAGCGC
CTGGAGCATGGGTCAGTTCGCCTGCCCGCAGGAGCCGCAGGTGGAGCACA
AGCTGGGCCAGATGGGCCAGAGCCACCAGACGACGGCCGCCGGCCAGCAT
TCGTTCCCCTTCCCGCCGACGCCGCCAAAGGACTCCACGCCCGACTCCGT
GCAAACCGGTCCATCCGAGTACCAGGCCGTGATGAACGCGTTTATGCACC
AGCAGGCCACGGGCTCTACCTCACTAACGGACGCCAGCTGTGCGTTGGAT
ATCAAGCCGTCGATCCAGAACGGCAGTGCGAGCGGATCCTCCGGCAGCGG
CACCACCCACACGTCGACGCCCAAGCAGCGCGAAGAGGGACGCGAGTGTG
TGAATTGTGGCGCCACATCGACGCCACTGTGGCGACGCGATGGAACGGGA
CACTATCTGTGCAACGCCTGTGGCCTGTACTACAAAATGAACGGCCAGAA
CCGACCCCTGATCAAGCCAAAGCGAAGACTGACCCTGCAATCGCTGCAGA
GTGCGGCCAAAAGGGCGGGCACATCCTGCGCCAACTGCAAGACCACAACC
ACAACCCTTTGGCGACGCAATGCCAGCGGTGAACCCGTGTGCAACGCCTG
CGGATTGTACTATAAGCTTCACAATGTCAATCGTCCACTCACCATGAAAA
AGGAGGGCATTCAGACGCGTAATCGCAAGCTGAGCTCCAAGTCCAAAAAG
AAGAAGGGTCTCGGTGGTGGCTGCCTGCCAATCGGTGGCCACCTGGGCAT
GGGCGACTTCAAGCCGCTGGATCCCTCGAAGGGATTCGGCGGTGGCTTCT
CTGCCTCCATGGCACAACATGGACACCTCTCGAGCGGACTGCATCCGGCA
CATGCGCACATGCACGGCAGCTGGTACACCGGCGGCATGGGCGCTTTGGG
AGCCTCGAGCGGACTCCAGGGCGGCTTCTCCACCGCCGGCTCTCTCAGCG
GAGCGGTGGTGCCCCACTCGCAGCCGTACCACTTGGGTCTCAGTTCGATG
GGCACCTGGCGCACTGACTACACGTGACGAAGCTTTCTAGACCAT
BS01543.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:37:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grn-RA | 1461 | CG9656-PA | 1..1461 | 17..1477 | 7305 | 100 | Plus |
grn-RC | 2139 | CG9656-PC | 1..769 | 17..785 | 3845 | 100 | Plus |
grn-RB | 2100 | CG9656-PB | 1..769 | 17..785 | 3845 | 100 | Plus |
grn-RC | 2139 | CG9656-PC | 1408..2100 | 785..1477 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:37:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grn-RA | 3451 | CG9656-RA | 416..1881 | 12..1477 | 7315 | 99.9 | Plus |
grn-RC | 4090 | CG9656-RC | 416..1189 | 12..785 | 3855 | 99.9 | Plus |
grn-RB | 4090 | CG9656-RB | 416..1189 | 12..785 | 3855 | 99.9 | Plus |
grn-RC | 4090 | CG9656-RC | 1828..2520 | 785..1477 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8179355..8179681 | 338..12 | 1620 | 99.7 | Minus |
3R | 32079331 | 3R | 8167830..8168117 | 626..339 | 1440 | 100 | Minus |
3R | 32079331 | 3R | 8149269..8149458 | 1451..1262 | 950 | 100 | Minus |
3R | 32079331 | 3R | 8149547..8149733 | 1262..1076 | 935 | 100 | Minus |
3R | 32079331 | 3R | 8167371..8167533 | 785..623 | 815 | 100 | Minus |
3R | 32079331 | 3R | 8160963..8161110 | 931..784 | 740 | 100 | Minus |
3R | 32079331 | 3R | 8153256..8153402 | 1077..931 | 735 | 100 | Minus |
3R | 32079331 | 3R | 16039052..16039185 | 785..918 | 370 | 85.1 | Plus |
3R | 32079331 | 3R | 16000639..16000763 | 785..909 | 250 | 80 | Plus |
3R | 32079331 | 3R | 16001776..16001916 | 974..1114 | 225 | 77.3 | Plus |
3R | 32079331 | 3R | 16018006..16018161 | 975..1130 | 210 | 75.6 | Plus |
3R | 32079331 | 3R | 16039351..16039436 | 1031..1116 | 190 | 81.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:37:51 has no hits.
BS01543.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:30:01 Download gff for
BS01543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-RA | 1..1461 | 17..1477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:44:59 Download gff for
BS01543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-RA | 419..1881 | 17..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:21 Download gff for
BS01543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-RA | 421..1883 | 17..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:30:02 Download gff for
BS01543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-RA | 403..1885 | 1..1483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:00:34 Download gff for
BS01543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grn-RA | 421..1883 | 17..1479 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:00:34 Download gff for
BS01543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8179355..8179676 | 17..338 | 100 | | Minus |
3R | 8148936..8148964 | 1451..1479 | 96 | <- | Minus |
3R | 8149270..8149457 | 1263..1450 | 100 | <- | Minus |
3R | 8149547..8149733 | 1076..1262 | 100 | <- | Minus |
3R | 8153258..8153401 | 932..1075 | 100 | <- | Minus |
3R | 8160963..8161108 | 786..931 | 100 | <- | Minus |
3R | 8167371..8167530 | 626..785 | 100 | <- | Minus |
3R | 8167831..8168117 | 339..625 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:21 Download gff for
BS01543.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3993553..3993839 | 339..625 | 100 | <- | Minus |
arm_3R | 3974658..3974686 | 1451..1479 | 96 | <- | Minus |
arm_3R | 3974992..3975179 | 1263..1450 | 100 | <- | Minus |
arm_3R | 3975269..3975455 | 1076..1262 | 100 | <- | Minus |
arm_3R | 3978980..3979123 | 932..1075 | 100 | <- | Minus |
arm_3R | 3986685..3986830 | 786..931 | 100 | <- | Minus |
arm_3R | 3993093..3993252 | 626..785 | 100 | <- | Minus |
arm_3R | 4005077..4005398 | 17..338 | 100 | | Minus |
BS01543.pep Sequence
Translation from 16 to 1476
> BS01543.pep
MDMTSTAEAAARSWYDSPRLGGGGSSGGGNGGGVSPQTNGLGSAGSSLAH
SHHSLSSGASSAGSSVGVGSALGGGGGSGLDTSDMSAFYALESNGHHRRY
YPSYHQHTSRMPSTHASPQVCRPHFHTPLSPWLTSEHKSFAPASAWSMGQ
FACPQEPQVEHKLGQMGQSHQTTAAGQHSFPFPPTPPKDSTPDSVQTGPS
EYQAVMNAFMHQQATGSTSLTDASCALDIKPSIQNGSASGSSGSGTTHTS
TPKQREEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIK
PKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYK
LHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGGCLPIGGHLGMGDFKP
LDPSKGFGGGFSASMAQHGHLSSGLHPAHAHMHGSWYTGGMGALGASSGL
QGGFSTAGSLSGAVVPHSQPYHLGLSSMGTWRTDYT*
BS01543.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grn-PA | 486 | CG9656-PA | 1..486 | 1..486 | 2639 | 100 | Plus |
grn-PB | 699 | CG9656-PB | 1..269 | 1..269 | 1378 | 95.9 | Plus |
grn-PC | 712 | CG9656-PC | 1..269 | 1..269 | 1378 | 95.9 | Plus |
grn-PB | 699 | CG9656-PB | 312..699 | 43..486 | 1309 | 62.7 | Plus |
grn-PC | 712 | CG9656-PC | 312..699 | 43..486 | 1309 | 62.7 | Plus |
pnr-PC | 537 | CG3978-PC | 147..299 | 239..405 | 509 | 61.1 | Plus |
pnr-PD | 488 | CG3978-PD | 95..250 | 239..405 | 505 | 60.5 | Plus |