Clone BS01543 Report

Search the DGRC for BS01543

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:15
Well:43
Vector:pDNR-Dual
Associated Gene/Transcriptgrn-RA
Protein status:BS01543.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01543.3prime Sequence

889 bp (720 high quality bases) assembled on 2005-11-29

> BS01543.3prime
ATGGTCTAGAAAGCTTCGTCACGTGTAGTCAGTGCGCCAGGTGCCCATCG
AACTGAGACCCAAGTGGTACGGCTGCGAGTGGGGCACCACCGCTCCGCTG
AGAGAGCCGGCGGTGGAGAAGCCGCCCTGGAGTCCGCTCGAGGCTCCCAA
AGCGCCCATGCCGCCGGTGTACCAGCTGCCGTGCATGTGCGCATGTGCCG
GATGCAGTCCGCTCGAGAGGTGTCCATGTTGTGCCATGGAGGCAGAGAAG
CCACCGCCGAATCCCTTCGAGGGATCCAGCGGCTTGAAGTCGCCCATGCC
CAGGTGGCCACCGATTGGCAGGCAGCCACCACCGAGACCCTTCTTCTTTT
TGGACTTGGAGCTCAGCTTGCGATTACGCGTCTGAATGCCCTCCTTTTTC
ATGGTGAGTGGACGATTGACATTGTGAAGCTTATAGTACAATCCGCAGGC
GTTGCACACGGGTTCACCGCTGGCATTGCGTCGCCAAAGGGTTGTGGTTG
TGGTCTTGCAGTTGGCGCAGGATGTGCCCGCCCTTTTGGCCGCACTCTGC
AGCGATTGCAGGGTCAGTCTTCGCTTTGGCTTGATCAGGGGTCGGTTCTG
GCCGTTCATTTTGTAGTACAGGCCACAGGCGTTGCACAGATAGTGTCCCG
TTCCATCGCGTCGCCACAGTGGCGTCGATGTGGCGCCACAATTCACACAC
TCGCGTCCCTCTTCGCGCTGCTTGGGCGTCGACGTGTGGGTGGTGCCGCT
GCCGGAGGATCCGCTCGCACTGCCGTTCTGGATCGACGGCTTGATATCCA
ACGCACAGCTGGCGTCCGTTAGTGAGGTAGAGCCCGTGGGCTGCTGGTGC
ATAAACGCGTTCATCACGGCCTGGTACTCGGATGGGACG

BS01543.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9656-PA 1461 grn-RA 595..1461 885..19 4310 99.8 Minus
CG3978-PB 1467 pnr-RB 380..422 668..626 165 95.3 Minus
CG3978-PA 1623 pnr-RA 536..578 668..626 165 95.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
grn-RA 3451 CG9656-RA 1015..1881 885..19 4320 99.9 Minus
grn-RC 4090 CG9656-RC 1828..2520 711..19 3465 100 Minus
grn-RB 4090 CG9656-RB 1828..2520 711..19 3465 100 Minus
grn-RC 4090 CG9656-RC 1015..1189 885..711 860 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8149269..8149458 45..234 950 100 Plus
3R 32079331 3R 8149547..8149733 234..420 935 100 Plus
3R 32079331 3R 8167371..8167533 711..873 800 99.4 Plus
3R 32079331 3R 8160963..8161110 565..712 740 100 Plus
3R 32079331 3R 8153256..8153402 419..565 735 100 Plus
3R 32079331 3R 16039052..16039185 711..578 370 85.1 Minus
3R 32079331 3R 16000639..16000763 711..587 250 80 Minus
3R 32079331 3R 16001776..16001916 522..382 225 77.3 Minus
3R 32079331 3R 16018006..16018161 521..366 210 75.6 Minus
3R 32079331 3R 16039351..16039436 465..380 190 81.4 Minus
Blast to na_te.dros performed on 2015-02-10 23:23:42 has no hits.

BS01543.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:22 Download gff for BS01543.3prime
Subject Subject Range Query Range Percent Splice Strand
grn-PA 591..1461 19..889 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:56 Download gff for BS01543.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9656-PA 591..1461 19..889 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:41:15 Download gff for BS01543.3prime
Subject Subject Range Query Range Percent Splice Strand
grn-RA 1011..1887 13..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:42:07 Download gff for BS01543.3prime
Subject Subject Range Query Range Percent Splice Strand
grn-RA 1011..1887 13..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:42:07 Download gff for BS01543.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8148932..8148964 13..45 93 <- Plus
3R 8149270..8149457 46..233 100 <- Plus
3R 8149547..8149733 234..420 100 <- Plus
3R 8153258..8153401 421..564 100 <- Plus
3R 8160963..8161108 565..710 100 <- Plus
3R 8167371..8167530 711..870 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:41:15 Download gff for BS01543.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3974654..3974686 13..45 93 <- Plus
arm_3R 3974992..3975179 46..233 100 <- Plus
arm_3R 3975269..3975455 234..420 100 <- Plus
arm_3R 3978980..3979123 421..564 100 <- Plus
arm_3R 3986685..3986830 565..710 100 <- Plus
arm_3R 3993093..3993252 711..870 99 <- Plus

BS01543.5prime Sequence

889 bp (744 high quality bases) assembled on 2005-11-29

> BS01543.5prime
GAAGTTATCAGTCGACATGGATATGACCTCAACAGCGGAGGCTGCCGCTC
GCAGCTGGTACGATAGTCCGCGTTTAGGCGGCGGCGGCTCCTCGGGCGGT
GGCAATGGGGGCGGCGTCTCGCCCCAAACGAACGGCCTTGGCAGCGCCGG
TAGCAGCCTGGCCCACAGCCACCACAGCCTCTCCAGCGGCGCCAGCTCGG
CGGGCAGCAGCGTGGGCGTGGGCTCTGCTCTTGGCGGCGGCGGCGGATCC
GGACTGGACACCAGCGACATGAGCGCCTTCTACGCGCTGGAGAGCAACGG
ACACCACCGGCGCTACTATCCCAGCTATCATCAGCACACATCCCGCATGC
CCTCCACCCATGCCTCGCCTCAAGTGTGCCGGCCGCACTTCCACACCCCG
CTGAGTCCCTGGCTGACCAGCGAGCACAAGTCCTTCGCCCCCGCCAGCGC
CTGGAGCATGGGTCAGTTCGCCTGCCCGCAGGAGCCGCAGGTGGAGCACA
AGCTGGGCCAGATGGGCCAGAGCCACCAGACGACGGCCGCCGGCCAGCAT
TCGTTCCCCTTCCCGCCGACGCCGCCAAAGGACTCCACGCCCGACTCCGT
GCAAACCGGTCCATCCGAGTACCAGGCCGTGATGAACGCGTTTATGCACC
AGCAGGCCACGGGCTCTACCTCACTAACGGACGCCAGCTGTGCGTTGGAT
ATCAAGCCGTCGATCCAGAACGGCAGTGCGAGCGGATCCTCCGGCAGCGG
CACCACCCACACGTCGACGCCCAAGCAGCGCGAAGAGGGACGCGAGTGTG
TGAATTGTGGGCGCACATCGACGCCACTGTGGCGACGCGATGGAACGGGA
CACTATCTGTTGCACGCCTGTGGCCTGTACTACAAAATG

BS01543.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9656-PA 1461 grn-RA 1..794 17..810 3970 100 Plus
CG9656-PA 1461 grn-RA 798..844 814..860 235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
grn-RA 3451 CG9656-RA 416..1293 12..889 4285 99.4 Plus
grn-RC 4090 CG9656-RC 416..1189 12..785 3855 99.9 Plus
grn-RB 4090 CG9656-RB 416..1189 12..785 3855 99.9 Plus
grn-RC 4090 CG9656-RC 1828..1932 785..889 435 96.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8179355..8179681 338..12 1620 99.7 Minus
3R 32079331 3R 8167830..8168117 626..339 1440 100 Minus
3R 32079331 3R 8167371..8167533 785..623 815 100 Minus
3R 32079331 3R 8161005..8161110 889..784 440 94.3 Minus
3R 32079331 3R 16039052..16039147 785..880 225 82.3 Plus
Blast to na_te.dros performed on 2015-02-10 21:03:03 has no hits.

BS01543.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:23 Download gff for BS01543.5prime
Subject Subject Range Query Range Percent Splice Strand
grn-PA 1..873 17..889 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:19:57 Download gff for BS01543.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9656-PA 1..873 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:54:20 Download gff for BS01543.5prime
Subject Subject Range Query Range Percent Splice Strand
grn-RA 405..1293 1..889 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:25 Download gff for BS01543.5prime
Subject Subject Range Query Range Percent Splice Strand
grn-RA 405..1293 1..889 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:25 Download gff for BS01543.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8161005..8161108 786..889 96 <- Minus
3R 8167371..8167530 626..785 100 <- Minus
3R 8167831..8168117 339..625 100 <- Minus
3R 8179355..8179689 1..338 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:54:20 Download gff for BS01543.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3986727..3986830 786..889 96 <- Minus
arm_3R 3993093..3993252 626..785 100 <- Minus
arm_3R 3993553..3993839 339..625 100 <- Minus
arm_3R 4005077..4005411 1..338 98   Minus

BS01543.complete Sequence

1495 bp (1495 high quality bases) assembled on 2005-10-17

GenBank Submission: FJ634641

> BS01543.complete
GAAGTTATCAGTCGACATGGATATGACCTCAACAGCGGAGGCTGCCGCTC
GCAGCTGGTACGATAGTCCGCGTTTAGGCGGCGGCGGCTCCTCGGGCGGT
GGCAATGGGGGCGGCGTCTCGCCCCAAACGAACGGCCTTGGCAGCGCCGG
TAGCAGCCTGGCCCACAGCCACCACAGCCTCTCCAGCGGCGCCAGCTCGG
CGGGCAGCAGCGTGGGCGTGGGCTCTGCTCTTGGCGGCGGCGGCGGATCC
GGACTGGACACCAGCGACATGAGCGCCTTCTACGCGCTGGAGAGCAACGG
ACACCACCGGCGCTACTATCCCAGCTATCATCAGCACACATCCCGCATGC
CCTCCACCCATGCCTCGCCTCAAGTGTGCCGGCCGCACTTCCACACCCCG
CTGAGTCCCTGGCTGACCAGCGAGCACAAGTCCTTCGCCCCCGCCAGCGC
CTGGAGCATGGGTCAGTTCGCCTGCCCGCAGGAGCCGCAGGTGGAGCACA
AGCTGGGCCAGATGGGCCAGAGCCACCAGACGACGGCCGCCGGCCAGCAT
TCGTTCCCCTTCCCGCCGACGCCGCCAAAGGACTCCACGCCCGACTCCGT
GCAAACCGGTCCATCCGAGTACCAGGCCGTGATGAACGCGTTTATGCACC
AGCAGGCCACGGGCTCTACCTCACTAACGGACGCCAGCTGTGCGTTGGAT
ATCAAGCCGTCGATCCAGAACGGCAGTGCGAGCGGATCCTCCGGCAGCGG
CACCACCCACACGTCGACGCCCAAGCAGCGCGAAGAGGGACGCGAGTGTG
TGAATTGTGGCGCCACATCGACGCCACTGTGGCGACGCGATGGAACGGGA
CACTATCTGTGCAACGCCTGTGGCCTGTACTACAAAATGAACGGCCAGAA
CCGACCCCTGATCAAGCCAAAGCGAAGACTGACCCTGCAATCGCTGCAGA
GTGCGGCCAAAAGGGCGGGCACATCCTGCGCCAACTGCAAGACCACAACC
ACAACCCTTTGGCGACGCAATGCCAGCGGTGAACCCGTGTGCAACGCCTG
CGGATTGTACTATAAGCTTCACAATGTCAATCGTCCACTCACCATGAAAA
AGGAGGGCATTCAGACGCGTAATCGCAAGCTGAGCTCCAAGTCCAAAAAG
AAGAAGGGTCTCGGTGGTGGCTGCCTGCCAATCGGTGGCCACCTGGGCAT
GGGCGACTTCAAGCCGCTGGATCCCTCGAAGGGATTCGGCGGTGGCTTCT
CTGCCTCCATGGCACAACATGGACACCTCTCGAGCGGACTGCATCCGGCA
CATGCGCACATGCACGGCAGCTGGTACACCGGCGGCATGGGCGCTTTGGG
AGCCTCGAGCGGACTCCAGGGCGGCTTCTCCACCGCCGGCTCTCTCAGCG
GAGCGGTGGTGCCCCACTCGCAGCCGTACCACTTGGGTCTCAGTTCGATG
GGCACCTGGCGCACTGACTACACGTGACGAAGCTTTCTAGACCAT

BS01543.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
grn-RA 1461 CG9656-PA 1..1461 17..1477 7305 100 Plus
grn-RC 2139 CG9656-PC 1..769 17..785 3845 100 Plus
grn-RB 2100 CG9656-PB 1..769 17..785 3845 100 Plus
grn-RC 2139 CG9656-PC 1408..2100 785..1477 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:37:54
Subject Length Description Subject Range Query Range Score Percent Strand
grn-RA 3451 CG9656-RA 416..1881 12..1477 7315 99.9 Plus
grn-RC 4090 CG9656-RC 416..1189 12..785 3855 99.9 Plus
grn-RB 4090 CG9656-RB 416..1189 12..785 3855 99.9 Plus
grn-RC 4090 CG9656-RC 1828..2520 785..1477 3465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8179355..8179681 338..12 1620 99.7 Minus
3R 32079331 3R 8167830..8168117 626..339 1440 100 Minus
3R 32079331 3R 8149269..8149458 1451..1262 950 100 Minus
3R 32079331 3R 8149547..8149733 1262..1076 935 100 Minus
3R 32079331 3R 8167371..8167533 785..623 815 100 Minus
3R 32079331 3R 8160963..8161110 931..784 740 100 Minus
3R 32079331 3R 8153256..8153402 1077..931 735 100 Minus
3R 32079331 3R 16039052..16039185 785..918 370 85.1 Plus
3R 32079331 3R 16000639..16000763 785..909 250 80 Plus
3R 32079331 3R 16001776..16001916 974..1114 225 77.3 Plus
3R 32079331 3R 16018006..16018161 975..1130 210 75.6 Plus
3R 32079331 3R 16039351..16039436 1031..1116 190 81.4 Plus
Blast to na_te.dros performed on 2014-11-28 07:37:51 has no hits.

BS01543.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:30:01 Download gff for BS01543.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 1..1461 17..1477 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:44:59 Download gff for BS01543.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 419..1881 17..1479 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:21 Download gff for BS01543.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 421..1883 17..1479 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:30:02 Download gff for BS01543.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 403..1885 1..1483 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:00:34 Download gff for BS01543.complete
Subject Subject Range Query Range Percent Splice Strand
grn-RA 421..1883 17..1479 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:00:34 Download gff for BS01543.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8179355..8179676 17..338 100   Minus
3R 8148936..8148964 1451..1479 96 <- Minus
3R 8149270..8149457 1263..1450 100 <- Minus
3R 8149547..8149733 1076..1262 100 <- Minus
3R 8153258..8153401 932..1075 100 <- Minus
3R 8160963..8161108 786..931 100 <- Minus
3R 8167371..8167530 626..785 100 <- Minus
3R 8167831..8168117 339..625 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:21 Download gff for BS01543.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3993553..3993839 339..625 100 <- Minus
arm_3R 3974658..3974686 1451..1479 96 <- Minus
arm_3R 3974992..3975179 1263..1450 100 <- Minus
arm_3R 3975269..3975455 1076..1262 100 <- Minus
arm_3R 3978980..3979123 932..1075 100 <- Minus
arm_3R 3986685..3986830 786..931 100 <- Minus
arm_3R 3993093..3993252 626..785 100 <- Minus
arm_3R 4005077..4005398 17..338 100   Minus

BS01543.pep Sequence

Translation from 16 to 1476

> BS01543.pep
MDMTSTAEAAARSWYDSPRLGGGGSSGGGNGGGVSPQTNGLGSAGSSLAH
SHHSLSSGASSAGSSVGVGSALGGGGGSGLDTSDMSAFYALESNGHHRRY
YPSYHQHTSRMPSTHASPQVCRPHFHTPLSPWLTSEHKSFAPASAWSMGQ
FACPQEPQVEHKLGQMGQSHQTTAAGQHSFPFPPTPPKDSTPDSVQTGPS
EYQAVMNAFMHQQATGSTSLTDASCALDIKPSIQNGSASGSSGSGTTHTS
TPKQREEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIK
PKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYK
LHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGGCLPIGGHLGMGDFKP
LDPSKGFGGGFSASMAQHGHLSSGLHPAHAHMHGSWYTGGMGALGASSGL
QGGFSTAGSLSGAVVPHSQPYHLGLSSMGTWRTDYT*

BS01543.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
grn-PA 486 CG9656-PA 1..486 1..486 2639 100 Plus
grn-PB 699 CG9656-PB 1..269 1..269 1378 95.9 Plus
grn-PC 712 CG9656-PC 1..269 1..269 1378 95.9 Plus
grn-PB 699 CG9656-PB 312..699 43..486 1309 62.7 Plus
grn-PC 712 CG9656-PC 312..699 43..486 1309 62.7 Plus
pnr-PC 537 CG3978-PC 147..299 239..405 509 61.1 Plus
pnr-PD 488 CG3978-PD 95..250 239..405 505 60.5 Plus