Clone BS01549 Report

Search the DGRC for BS01549

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:15
Well:49
Vector:pDNR-Dual
Associated Gene/Transcriptcact-RA
Protein status:BS01549.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01549.3prime Sequence

887 bp (775 high quality bases) assembled on 2005-11-29

> BS01549.3prime
ATGGTCTAGAAAGCTTCGTCAGGCAACTGTCATGGGATTGCCACCGTTGT
AGCTGACAAAATAGCGAGGATCACCAAAGCGATCGTACATCTTCGTATCG
TCTAGATCTTCGATATCGCTACTGTCGTAATCACTGTCCGGAGGCGTTAC
GGTCTCCGCTCCGCGCTTCTCCAGGATGTTCTGCATGCGCGACTTGTTCA
TGATGCACGCAAACTGGTAGGCCGTCAAGCCGGCGTAGGTGGCCGTTTCC
AGGTTCAGCTTCTCGCACTCATCGAGCAGGAAGTTGGCCAGATCCTCGTT
GCAGCCCTCGATCGCAATGTGCAGCGGTGTGCGGCCCGATTTTCCCTCCC
TGGCGTTAATGTCTGCTCCATGGGATACCAAAATGCGTAAGATATCAATG
TGACCCGCCTCGGCGGCCAAATGCACACAGCGTTCTCCATCGTAGTTGCG
AATCTCCAGATCGGCGGGCAGGCAGGCGTAGCTCAGGGAACTGACCGCTT
TGTCGTTGGATCGGTGTCCATATTGTCGGTGGGCCTCATGGATTTCCGTG
GCGCCGAACTTCTCTGTCAAGGCACGGACGCACTGTTTCTCTCCGGCGAT
GCAGGAAAGATGCAGAGCTGTGTTTCCATGACGATCGCGCACCGTGGGCT
CAGCTCCGGCGAGTAAAAGTATCCTCATGATGTTCGGCTGGGCAGTAAGA
GCGGCCAGATGAAGGGGTGTCTGGGCCACATCGTTCTGGATGTTGAGCAG
GCACGGATGAGGAGCCATGCGAATCAGGGCGGCCACCACGTCCACTGATC
CCGAAATACAGGCCAGGTGCAAAGGTGTGTCGCCGTCGTCGTTTTGTTGA
TAGAAACTGCTCCAGGCGTTCATGATATTAATGCTGC

BS01549.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5848-PA 1503 cact-RA 667..1503 855..19 4185 100 Minus
CG5848-PB 1503 cact-RB 667..1503 855..19 4185 100 Minus
CG5848-PD 1503 cact-RD 667..1503 855..19 4185 100 Minus
CG5848-PC 1449 cact-RC 667..1431 855..91 3825 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
cact-RE 1999 CG5848-RE 849..1717 887..19 4300 99.8 Minus
cact-RD 2178 CG5848-RD 1028..1896 887..19 4300 99.8 Minus
cact-RB 2005 CG5848-RB 794..1662 887..19 4300 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16314451..16314709 91..349 1295 100 Plus
2L 23513712 2L 16322959..16323172 437..650 1070 100 Plus
2L 23513712 2L 16323340..16323517 649..826 890 100 Plus
2L 23513712 2L 16314769..16314859 348..438 455 100 Plus
2L 23513712 2L 16313379..16313452 19..92 370 100 Plus
2L 23513712 2L 16324333..16324393 827..887 215 90.2 Plus
Blast to na_te.dros performed on 2015-02-10 19:39:56 has no hits.

BS01549.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:33 Download gff for BS01549.3prime
Subject Subject Range Query Range Percent Splice Strand
cact-PB 635..1503 19..887 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:20:10 Download gff for BS01549.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5848-PD 635..1503 19..887 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:28:26 Download gff for BS01549.3prime
Subject Subject Range Query Range Percent Splice Strand
cact-RB 794..1666 13..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:56 Download gff for BS01549.3prime
Subject Subject Range Query Range Percent Splice Strand
cact-RB 794..1666 13..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:56 Download gff for BS01549.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16313375..16313450 13..90 96 <- Plus
2L 16314451..16314708 91..348 100 <- Plus
2L 16314770..16314858 349..437 100 <- Plus
2L 16322960..16323170 438..648 100 <- Plus
2L 16323340..16323517 649..826 100 <- Plus
2L 16324333..16324393 827..887 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:28:26 Download gff for BS01549.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16313375..16313450 13..90 96 <- Plus
arm_2L 16314451..16314708 91..348 100 <- Plus
arm_2L 16314770..16314858 349..437 100 <- Plus
arm_2L 16322960..16323170 438..648 100 <- Plus
arm_2L 16323340..16323517 649..826 100 <- Plus
arm_2L 16324333..16324393 827..887 96   Plus

BS01549.5prime Sequence

790 bp (789 high quality bases) assembled on 2005-11-29

> BS01549.5prime
GAAGTTATCAGTCGACATGCCGAGCCCAACAAAAGCAGCGGAGGCAGCAA
CAAAGGCAACAGCAACAAGTGACTGCAGCTGCAGCGCTGCCAGTGTTGAG
CAGCGCGCCCCCTCAAACGCGGCTAACCCCTCGTCCTCACTAGCCACTAG
CGGTAAAATTGGCGGCAAAACACAAGATCAAACGGCCGCCATTAACAAGC
AAAAGGAATTTGCCGTGCCAAACGAAACCAGTGATTCGGGCTTCATCTCC
GGCCCGCAATCCTCGCAGATCTTCAGCGAGGAGATAGTCCCCGATAGCGA
GGAACAGGATAAGGATCAGCAGGAGTCGGCACCCCAAAAGGAACAGCCCG
TTGTCCTCGATTCCGGTATTATCGACGAAGAAGAGGATCAGGAGGAGCAG
GAGAAAGAGGAGGAGCACCAGGACACCACCACTGCCACCGCCGATTCAAT
GCGACTCAAACACAGCGCGGACACAGGCATCCCACAATGGACCGTCGAAA
GCCATTTGGTCAGTCGCGGCGAACAGCTTAACAATCTCGGCCAGAGCAGC
AGCACCCAAATCACCGGTCGCAGCAAGGTTCAATCCTCCACAGCCAGCAC
GGCGAACGCGAATCCTTCGGGATCGGGAGCAACATCATCCGCTCCGCCCA
GCAGCATTAATATCATGAACGCCTGGGAGCAGTTCTATCAACAAAACGAC
GACGGCGACACACCTTTGCACCTGGCCTGTATTTCGGGATCAGTGGACGT
GGTGGCCGCCCTGATTCGCATGGCTCCTCATCCGTGCCTG

BS01549.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5848-PA 1503 cact-RA 1..774 17..790 3870 100 Plus
CG5848-PB 1503 cact-RB 1..774 17..790 3870 100 Plus
CG5848-PC 1449 cact-RC 1..774 17..790 3870 100 Plus
CG5848-PD 1503 cact-RD 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
cact-RE 1999 CG5848-RE 215..988 17..790 3870 100 Plus
cact-RD 2178 CG5848-RD 394..1167 17..790 3870 100 Plus
cact-RC 2356 CG5848-RC 160..933 17..790 3870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16324333..16325027 711..17 3475 100 Minus
2L 23513712 2L 16323439..16323517 790..712 395 100 Minus
Blast to na_te.dros performed 2015-02-12 12:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6845 27..85 132 74.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2420 27..92 122 68.7 Plus

BS01549.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:34 Download gff for BS01549.5prime
Subject Subject Range Query Range Percent Splice Strand
cact-PB 1..774 17..790 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:20:11 Download gff for BS01549.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5848-PD 1..774 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:22:28 Download gff for BS01549.5prime
Subject Subject Range Query Range Percent Splice Strand
cact-RC 153..933 9..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:34 Download gff for BS01549.5prime
Subject Subject Range Query Range Percent Splice Strand
cact-RC 153..933 9..790 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:34 Download gff for BS01549.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16323439..16323517 712..790 100 <- Minus
2L 16324333..16325034 9..711 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:22:28 Download gff for BS01549.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16323439..16323517 712..790 100 <- Minus
arm_2L 16324333..16325034 9..711 99   Minus

BS01549.complete Sequence

1537 bp (1537 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634644

> BS01549.complete
GAAGTTATCAGTCGACATGCCGAGCCCAACAAAAGCAGCGGAGGCAGCAA
CAAAGGCAACAGCAACAAGTGACTGCAGCTGCAGCGCTGCCAGTGTTGAG
CAGCGCGCCCCCTCAAACGCGGCTAACCCCTCGTCCTCACTAGCCACTAG
CGGTAAAATTGGCGGCAAAACACAAGATCAAACGGCCGCCATTAACAAGC
AAAAGGAATTTGCCGTGCCAAACGAAACCAGTGATTCGGGCTTCATCTCC
GGCCCGCAATCCTCGCAGATCTTCAGCGAGGAGATAGTCCCCGATAGCGA
GGAACAGGATAAGGATCAGCAGGAGTCGGCACCCCAAAAGGAACAGCCCG
TTGTCCTCGATTCCGGTATTATCGACGAAGAAGAGGATCAGGAGGAGCAG
GAGAAAGAGGAGGAGCACCAGGACACCACCACTGCCACCGCCGATTCAAT
GCGACTCAAACACAGCGCGGACACAGGCATCCCACAATGGACCGTCGAAA
GCCATTTGGTCAGTCGCGGCGAACAGCTTAACAATCTCGGCCAGAGCAGC
AGCACCCAAATCACCGGTCGCAGCAAGGTTCAATCCTCCACAGCCAGCAC
GGCGAACGCGAATCCTTCGGGATCGGGAGCAACATCATCCGCTCCGCCCA
GCAGCATTAATATCATGAACGCCTGGGAGCAGTTCTATCAACAAAACGAC
GACGGCGACACACCTTTGCACCTGGCCTGTATTTCGGGATCAGTGGACGT
GGTGGCCGCCCTGATTCGCATGGCTCCTCATCCGTGCCTGCTCAACATCC
AGAACGATGTGGCCCAGACACCCCTTCATCTGGCCGCTCTTACTGCCCAG
CCGAACATCATGAGGATACTTTTACTCGCCGGAGCTGAGCCCACGGTGCG
CGATCGTCATGGAAACACAGCTCTGCATCTTTCCTGCATCGCCGGAGAGA
AACAGTGCGTCCGTGCCTTGACAGAGAAGTTCGGCGCCACGGAAATCCAT
GAGGCCCACCGACAATATGGACACCGATCCAACGACAAAGCGGTCAGTTC
CCTGAGCTACGCCTGCCTGCCCGCCGATCTGGAGATTCGCAACTACGATG
GAGAACGCTGTGTGCATTTGGCCGCCGAGGCGGGTCACATTGATATCTTA
CGCATTTTGGTATCCCATGGAGCAGACATTAACGCCAGGGAGGGAAAATC
GGGCCGCACACCGCTGCACATTGCGATCGAGGGCTGCAACGAGGATCTGG
CCAACTTCCTGCTCGATGAGTGCGAGAAGCTGAACCTGGAAACGGCCACC
TACGCCGGCTTGACGGCCTACCAGTTTGCGTGCATCATGAACAAGTCGCG
CATGCAGAACATCCTGGAGAAGCGCGGAGCGGAGACCGTAACGCCTCCGG
ACAGTGATTACGACAGTAGCGATATCGAAGATCTAGACGATACGAAGATG
TACGATCGCTTTGGTGATCCTCGCTATTTTGTCAGCTACAACGGTGGCAA
TCCCATGACAGTTGCCTGACGAAGCTTTCTAGACCAT

BS01549.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
cact-RE 1503 CG5848-PE 1..1503 17..1519 7515 100 Plus
cact-RD 1503 CG5848-PD 1..1503 17..1519 7515 100 Plus
cact-RB 1503 CG5848-PB 1..1503 17..1519 7515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
cact-RE 1999 CG5848-RE 215..1717 17..1519 7515 100 Plus
cact-RD 2178 CG5848-RD 394..1896 17..1519 7515 100 Plus
cact-RB 2005 CG5848-RB 160..1662 17..1519 7515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16324333..16325027 711..17 3475 100 Minus
2L 23513712 2L 16314451..16314709 1447..1189 1295 100 Minus
2L 23513712 2L 16322959..16323172 1101..888 1070 100 Minus
2L 23513712 2L 16323340..16323517 889..712 890 100 Minus
2L 23513712 2L 16314769..16314859 1190..1100 455 100 Minus
2L 23513712 2L 16313379..16313452 1519..1446 370 100 Minus
Blast to na_te.dros performed 2014-11-28 07:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6845 27..85 132 74.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2420 27..92 122 68.7 Plus

BS01549.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:38 Download gff for BS01549.complete
Subject Subject Range Query Range Percent Splice Strand
cact-RD 1..1503 17..1519 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:11 Download gff for BS01549.complete
Subject Subject Range Query Range Percent Splice Strand
cact-RD 417..1919 17..1521 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:18 Download gff for BS01549.complete
Subject Subject Range Query Range Percent Splice Strand
cact-RB 160..1662 17..1521 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:38 Download gff for BS01549.complete
Subject Subject Range Query Range Percent Splice Strand
cact-RD 410..1923 9..1525 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:05:10 Download gff for BS01549.complete
Subject Subject Range Query Range Percent Splice Strand
cact-RB 160..1662 17..1521 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:05:10 Download gff for BS01549.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16313376..16313450 1448..1521 97 <- Minus
2L 16314451..16314708 1190..1447 100 <- Minus
2L 16314770..16314858 1101..1189 100 <- Minus
2L 16322960..16323170 890..1100 100 <- Minus
2L 16323340..16323517 712..889 100 <- Minus
2L 16324333..16325027 17..711 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:18 Download gff for BS01549.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16313376..16313450 1448..1521 97 <- Minus
arm_2L 16314451..16314708 1190..1447 100 <- Minus
arm_2L 16314770..16314858 1101..1189 100 <- Minus
arm_2L 16322960..16323170 890..1100 100 <- Minus
arm_2L 16323340..16323517 712..889 100 <- Minus
arm_2L 16324333..16325027 17..711 100   Minus

BS01549.pep Sequence

Translation from 16 to 1518

> BS01549.pep
MPSPTKAAEAATKATATSDCSCSAASVEQRAPSNAANPSSSLATSGKIGG
KTQDQTAAINKQKEFAVPNETSDSGFISGPQSSQIFSEEIVPDSEEQDKD
QQESAPQKEQPVVLDSGIIDEEEDQEEQEKEEEHQDTTTATADSMRLKHS
ADTGIPQWTVESHLVSRGEQLNNLGQSSSTQITGRSKVQSSTASTANANP
SGSGATSSAPPSSINIMNAWEQFYQQNDDGDTPLHLACISGSVDVVAALI
RMAPHPCLLNIQNDVAQTPLHLAALTAQPNIMRILLLAGAEPTVRDRHGN
TALHLSCIAGEKQCVRALTEKFGATEIHEAHRQYGHRSNDKAVSSLSYAC
LPADLEIRNYDGERCVHLAAEAGHIDILRILVSHGADINAREGKSGRTPL
HIAIEGCNEDLANFLLDECEKLNLETATYAGLTAYQFACIMNKSRMQNIL
EKRGAETVTPPDSDYDSSDIEDLDDTKMYDRFGDPRYFVSYNGGNPMTVA
*

BS01549.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:14
Subject Length Description Subject Range Query Range Score Percent Strand
cact-PE 500 CG5848-PE 1..500 1..500 2580 100 Plus
cact-PD 500 CG5848-PD 1..500 1..500 2580 100 Plus
cact-PB 500 CG5848-PB 1..500 1..500 2580 100 Plus
cact-PA 500 CG5848-PA 1..500 1..500 2580 100 Plus
cact-PC 482 CG5848-PC 1..478 1..478 2451 99.8 Plus