Clone Sequence Records
BS01549.3prime Sequence
887 bp (775 high quality bases) assembled on 2005-11-29
> BS01549.3prime
ATGGTCTAGAAAGCTTCGTCAGGCAACTGTCATGGGATTGCCACCGTTGT
AGCTGACAAAATAGCGAGGATCACCAAAGCGATCGTACATCTTCGTATCG
TCTAGATCTTCGATATCGCTACTGTCGTAATCACTGTCCGGAGGCGTTAC
GGTCTCCGCTCCGCGCTTCTCCAGGATGTTCTGCATGCGCGACTTGTTCA
TGATGCACGCAAACTGGTAGGCCGTCAAGCCGGCGTAGGTGGCCGTTTCC
AGGTTCAGCTTCTCGCACTCATCGAGCAGGAAGTTGGCCAGATCCTCGTT
GCAGCCCTCGATCGCAATGTGCAGCGGTGTGCGGCCCGATTTTCCCTCCC
TGGCGTTAATGTCTGCTCCATGGGATACCAAAATGCGTAAGATATCAATG
TGACCCGCCTCGGCGGCCAAATGCACACAGCGTTCTCCATCGTAGTTGCG
AATCTCCAGATCGGCGGGCAGGCAGGCGTAGCTCAGGGAACTGACCGCTT
TGTCGTTGGATCGGTGTCCATATTGTCGGTGGGCCTCATGGATTTCCGTG
GCGCCGAACTTCTCTGTCAAGGCACGGACGCACTGTTTCTCTCCGGCGAT
GCAGGAAAGATGCAGAGCTGTGTTTCCATGACGATCGCGCACCGTGGGCT
CAGCTCCGGCGAGTAAAAGTATCCTCATGATGTTCGGCTGGGCAGTAAGA
GCGGCCAGATGAAGGGGTGTCTGGGCCACATCGTTCTGGATGTTGAGCAG
GCACGGATGAGGAGCCATGCGAATCAGGGCGGCCACCACGTCCACTGATC
CCGAAATACAGGCCAGGTGCAAAGGTGTGTCGCCGTCGTCGTTTTGTTGA
TAGAAACTGCTCCAGGCGTTCATGATATTAATGCTGC
BS01549.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5848-PA | 1503 | cact-RA | 667..1503 | 855..19 | 4185 | 100 | Minus |
CG5848-PB | 1503 | cact-RB | 667..1503 | 855..19 | 4185 | 100 | Minus |
CG5848-PD | 1503 | cact-RD | 667..1503 | 855..19 | 4185 | 100 | Minus |
CG5848-PC | 1449 | cact-RC | 667..1431 | 855..91 | 3825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cact-RE | 1999 | CG5848-RE | 849..1717 | 887..19 | 4300 | 99.8 | Minus |
cact-RD | 2178 | CG5848-RD | 1028..1896 | 887..19 | 4300 | 99.8 | Minus |
cact-RB | 2005 | CG5848-RB | 794..1662 | 887..19 | 4300 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16314451..16314709 | 91..349 | 1295 | 100 | Plus |
2L | 23513712 | 2L | 16322959..16323172 | 437..650 | 1070 | 100 | Plus |
2L | 23513712 | 2L | 16323340..16323517 | 649..826 | 890 | 100 | Plus |
2L | 23513712 | 2L | 16314769..16314859 | 348..438 | 455 | 100 | Plus |
2L | 23513712 | 2L | 16313379..16313452 | 19..92 | 370 | 100 | Plus |
2L | 23513712 | 2L | 16324333..16324393 | 827..887 | 215 | 90.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:39:56 has no hits.
BS01549.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:33 Download gff for
BS01549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cact-PB | 635..1503 | 19..887 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:20:10 Download gff for
BS01549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5848-PD | 635..1503 | 19..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:28:26 Download gff for
BS01549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cact-RB | 794..1666 | 13..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:56 Download gff for
BS01549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cact-RB | 794..1666 | 13..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:56 Download gff for
BS01549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16313375..16313450 | 13..90 | 96 | <- | Plus |
2L | 16314451..16314708 | 91..348 | 100 | <- | Plus |
2L | 16314770..16314858 | 349..437 | 100 | <- | Plus |
2L | 16322960..16323170 | 438..648 | 100 | <- | Plus |
2L | 16323340..16323517 | 649..826 | 100 | <- | Plus |
2L | 16324333..16324393 | 827..887 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:28:26 Download gff for
BS01549.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16313375..16313450 | 13..90 | 96 | <- | Plus |
arm_2L | 16314451..16314708 | 91..348 | 100 | <- | Plus |
arm_2L | 16314770..16314858 | 349..437 | 100 | <- | Plus |
arm_2L | 16322960..16323170 | 438..648 | 100 | <- | Plus |
arm_2L | 16323340..16323517 | 649..826 | 100 | <- | Plus |
arm_2L | 16324333..16324393 | 827..887 | 96 | | Plus |
BS01549.5prime Sequence
790 bp (789 high quality bases) assembled on 2005-11-29
> BS01549.5prime
GAAGTTATCAGTCGACATGCCGAGCCCAACAAAAGCAGCGGAGGCAGCAA
CAAAGGCAACAGCAACAAGTGACTGCAGCTGCAGCGCTGCCAGTGTTGAG
CAGCGCGCCCCCTCAAACGCGGCTAACCCCTCGTCCTCACTAGCCACTAG
CGGTAAAATTGGCGGCAAAACACAAGATCAAACGGCCGCCATTAACAAGC
AAAAGGAATTTGCCGTGCCAAACGAAACCAGTGATTCGGGCTTCATCTCC
GGCCCGCAATCCTCGCAGATCTTCAGCGAGGAGATAGTCCCCGATAGCGA
GGAACAGGATAAGGATCAGCAGGAGTCGGCACCCCAAAAGGAACAGCCCG
TTGTCCTCGATTCCGGTATTATCGACGAAGAAGAGGATCAGGAGGAGCAG
GAGAAAGAGGAGGAGCACCAGGACACCACCACTGCCACCGCCGATTCAAT
GCGACTCAAACACAGCGCGGACACAGGCATCCCACAATGGACCGTCGAAA
GCCATTTGGTCAGTCGCGGCGAACAGCTTAACAATCTCGGCCAGAGCAGC
AGCACCCAAATCACCGGTCGCAGCAAGGTTCAATCCTCCACAGCCAGCAC
GGCGAACGCGAATCCTTCGGGATCGGGAGCAACATCATCCGCTCCGCCCA
GCAGCATTAATATCATGAACGCCTGGGAGCAGTTCTATCAACAAAACGAC
GACGGCGACACACCTTTGCACCTGGCCTGTATTTCGGGATCAGTGGACGT
GGTGGCCGCCCTGATTCGCATGGCTCCTCATCCGTGCCTG
BS01549.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5848-PA | 1503 | cact-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
CG5848-PB | 1503 | cact-RB | 1..774 | 17..790 | 3870 | 100 | Plus |
CG5848-PC | 1449 | cact-RC | 1..774 | 17..790 | 3870 | 100 | Plus |
CG5848-PD | 1503 | cact-RD | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cact-RE | 1999 | CG5848-RE | 215..988 | 17..790 | 3870 | 100 | Plus |
cact-RD | 2178 | CG5848-RD | 394..1167 | 17..790 | 3870 | 100 | Plus |
cact-RC | 2356 | CG5848-RC | 160..933 | 17..790 | 3870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:44:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16324333..16325027 | 711..17 | 3475 | 100 | Minus |
2L | 23513712 | 2L | 16323439..16323517 | 790..712 | 395 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 12:44:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6845 | 27..85 | 132 | 74.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2420 | 27..92 | 122 | 68.7 | Plus |
BS01549.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:34 Download gff for
BS01549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cact-PB | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:20:11 Download gff for
BS01549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5848-PD | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:22:28 Download gff for
BS01549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cact-RC | 153..933 | 9..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:16:34 Download gff for
BS01549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cact-RC | 153..933 | 9..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:16:34 Download gff for
BS01549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16323439..16323517 | 712..790 | 100 | <- | Minus |
2L | 16324333..16325034 | 9..711 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:22:28 Download gff for
BS01549.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16323439..16323517 | 712..790 | 100 | <- | Minus |
arm_2L | 16324333..16325034 | 9..711 | 99 | | Minus |
BS01549.complete Sequence
1537 bp (1537 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634644
> BS01549.complete
GAAGTTATCAGTCGACATGCCGAGCCCAACAAAAGCAGCGGAGGCAGCAA
CAAAGGCAACAGCAACAAGTGACTGCAGCTGCAGCGCTGCCAGTGTTGAG
CAGCGCGCCCCCTCAAACGCGGCTAACCCCTCGTCCTCACTAGCCACTAG
CGGTAAAATTGGCGGCAAAACACAAGATCAAACGGCCGCCATTAACAAGC
AAAAGGAATTTGCCGTGCCAAACGAAACCAGTGATTCGGGCTTCATCTCC
GGCCCGCAATCCTCGCAGATCTTCAGCGAGGAGATAGTCCCCGATAGCGA
GGAACAGGATAAGGATCAGCAGGAGTCGGCACCCCAAAAGGAACAGCCCG
TTGTCCTCGATTCCGGTATTATCGACGAAGAAGAGGATCAGGAGGAGCAG
GAGAAAGAGGAGGAGCACCAGGACACCACCACTGCCACCGCCGATTCAAT
GCGACTCAAACACAGCGCGGACACAGGCATCCCACAATGGACCGTCGAAA
GCCATTTGGTCAGTCGCGGCGAACAGCTTAACAATCTCGGCCAGAGCAGC
AGCACCCAAATCACCGGTCGCAGCAAGGTTCAATCCTCCACAGCCAGCAC
GGCGAACGCGAATCCTTCGGGATCGGGAGCAACATCATCCGCTCCGCCCA
GCAGCATTAATATCATGAACGCCTGGGAGCAGTTCTATCAACAAAACGAC
GACGGCGACACACCTTTGCACCTGGCCTGTATTTCGGGATCAGTGGACGT
GGTGGCCGCCCTGATTCGCATGGCTCCTCATCCGTGCCTGCTCAACATCC
AGAACGATGTGGCCCAGACACCCCTTCATCTGGCCGCTCTTACTGCCCAG
CCGAACATCATGAGGATACTTTTACTCGCCGGAGCTGAGCCCACGGTGCG
CGATCGTCATGGAAACACAGCTCTGCATCTTTCCTGCATCGCCGGAGAGA
AACAGTGCGTCCGTGCCTTGACAGAGAAGTTCGGCGCCACGGAAATCCAT
GAGGCCCACCGACAATATGGACACCGATCCAACGACAAAGCGGTCAGTTC
CCTGAGCTACGCCTGCCTGCCCGCCGATCTGGAGATTCGCAACTACGATG
GAGAACGCTGTGTGCATTTGGCCGCCGAGGCGGGTCACATTGATATCTTA
CGCATTTTGGTATCCCATGGAGCAGACATTAACGCCAGGGAGGGAAAATC
GGGCCGCACACCGCTGCACATTGCGATCGAGGGCTGCAACGAGGATCTGG
CCAACTTCCTGCTCGATGAGTGCGAGAAGCTGAACCTGGAAACGGCCACC
TACGCCGGCTTGACGGCCTACCAGTTTGCGTGCATCATGAACAAGTCGCG
CATGCAGAACATCCTGGAGAAGCGCGGAGCGGAGACCGTAACGCCTCCGG
ACAGTGATTACGACAGTAGCGATATCGAAGATCTAGACGATACGAAGATG
TACGATCGCTTTGGTGATCCTCGCTATTTTGTCAGCTACAACGGTGGCAA
TCCCATGACAGTTGCCTGACGAAGCTTTCTAGACCAT
BS01549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:50:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cact-RE | 1503 | CG5848-PE | 1..1503 | 17..1519 | 7515 | 100 | Plus |
cact-RD | 1503 | CG5848-PD | 1..1503 | 17..1519 | 7515 | 100 | Plus |
cact-RB | 1503 | CG5848-PB | 1..1503 | 17..1519 | 7515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:50:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cact-RE | 1999 | CG5848-RE | 215..1717 | 17..1519 | 7515 | 100 | Plus |
cact-RD | 2178 | CG5848-RD | 394..1896 | 17..1519 | 7515 | 100 | Plus |
cact-RB | 2005 | CG5848-RB | 160..1662 | 17..1519 | 7515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16324333..16325027 | 711..17 | 3475 | 100 | Minus |
2L | 23513712 | 2L | 16314451..16314709 | 1447..1189 | 1295 | 100 | Minus |
2L | 23513712 | 2L | 16322959..16323172 | 1101..888 | 1070 | 100 | Minus |
2L | 23513712 | 2L | 16323340..16323517 | 889..712 | 890 | 100 | Minus |
2L | 23513712 | 2L | 16314769..16314859 | 1190..1100 | 455 | 100 | Minus |
2L | 23513712 | 2L | 16313379..16313452 | 1519..1446 | 370 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 07:50:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6845 | 27..85 | 132 | 74.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2420 | 27..92 | 122 | 68.7 | Plus |
BS01549.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:38 Download gff for
BS01549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cact-RD | 1..1503 | 17..1519 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:11 Download gff for
BS01549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cact-RD | 417..1919 | 17..1521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:18 Download gff for
BS01549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cact-RB | 160..1662 | 17..1521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:38 Download gff for
BS01549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cact-RD | 410..1923 | 9..1525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:05:10 Download gff for
BS01549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cact-RB | 160..1662 | 17..1521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:05:10 Download gff for
BS01549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16313376..16313450 | 1448..1521 | 97 | <- | Minus |
2L | 16314451..16314708 | 1190..1447 | 100 | <- | Minus |
2L | 16314770..16314858 | 1101..1189 | 100 | <- | Minus |
2L | 16322960..16323170 | 890..1100 | 100 | <- | Minus |
2L | 16323340..16323517 | 712..889 | 100 | <- | Minus |
2L | 16324333..16325027 | 17..711 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:18 Download gff for
BS01549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16313376..16313450 | 1448..1521 | 97 | <- | Minus |
arm_2L | 16314451..16314708 | 1190..1447 | 100 | <- | Minus |
arm_2L | 16314770..16314858 | 1101..1189 | 100 | <- | Minus |
arm_2L | 16322960..16323170 | 890..1100 | 100 | <- | Minus |
arm_2L | 16323340..16323517 | 712..889 | 100 | <- | Minus |
arm_2L | 16324333..16325027 | 17..711 | 100 | | Minus |
BS01549.pep Sequence
Translation from 16 to 1518
> BS01549.pep
MPSPTKAAEAATKATATSDCSCSAASVEQRAPSNAANPSSSLATSGKIGG
KTQDQTAAINKQKEFAVPNETSDSGFISGPQSSQIFSEEIVPDSEEQDKD
QQESAPQKEQPVVLDSGIIDEEEDQEEQEKEEEHQDTTTATADSMRLKHS
ADTGIPQWTVESHLVSRGEQLNNLGQSSSTQITGRSKVQSSTASTANANP
SGSGATSSAPPSSINIMNAWEQFYQQNDDGDTPLHLACISGSVDVVAALI
RMAPHPCLLNIQNDVAQTPLHLAALTAQPNIMRILLLAGAEPTVRDRHGN
TALHLSCIAGEKQCVRALTEKFGATEIHEAHRQYGHRSNDKAVSSLSYAC
LPADLEIRNYDGERCVHLAAEAGHIDILRILVSHGADINAREGKSGRTPL
HIAIEGCNEDLANFLLDECEKLNLETATYAGLTAYQFACIMNKSRMQNIL
EKRGAETVTPPDSDYDSSDIEDLDDTKMYDRFGDPRYFVSYNGGNPMTVA
*
BS01549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cact-PE | 500 | CG5848-PE | 1..500 | 1..500 | 2580 | 100 | Plus |
cact-PD | 500 | CG5848-PD | 1..500 | 1..500 | 2580 | 100 | Plus |
cact-PB | 500 | CG5848-PB | 1..500 | 1..500 | 2580 | 100 | Plus |
cact-PA | 500 | CG5848-PA | 1..500 | 1..500 | 2580 | 100 | Plus |
cact-PC | 482 | CG5848-PC | 1..478 | 1..478 | 2451 | 99.8 | Plus |