Clone BS01551 Report

Search the DGRC for BS01551

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:15
Well:51
Vector:pDNR-Dual
Associated Gene/Transcriptcroc-RA
Protein status:BS01551.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01551.3prime Sequence

785 bp (779 high quality bases) assembled on 2005-11-29

> BS01551.3prime
ATGGTCTAGAAAGCTTCGTTACACCCCGTACTTGATGCCGTACTCCTGGT
AGTGGCCCACATGCGGTCGGTAGTGGCTCAGATTGCTCAGCTGACCCAGC
TGGCCCAGGTTCCCGCTAAGCGCCGCATGGTGATGATGGTGGTGGTGGTG
GCTACTGATCACCGCCGCCGCTGCTGCCGCTGATGCCGCTGCCACGGATG
CGGAGGCAGGTGGACTGGCGGATTGTAGGCTGCCGGTGGGACTACCGGTG
TCCAGTTGGCAGGATTGGTTCTGCTCGAAGATCATGTCGCGGAAACCCAG
TGCCGATGTGGGACTGCTGGTCAGCACGCTGGAGGATCCTCCACCGCCAC
CGCCGCCGCCTCCGCCACCGTTGCCCACTCCATTGTGGTTGAGTACGCTG
CTGCTGTTGTTGTTATTATGTCCCGGGTGGGTGGGTGTGCCCTGCTGCCC
ATTGTGAGGAACGGGTTCCGATGGTGGCGTTTCCGGGGTATACCAACCCC
CGTGCGCGGGACCATGCGGAGTTGAGATCGTGGTGGGCGAGTGTCCGGAC
GATTGGCCTCCCGCTCCTTGGCCGCCGGGGGTCAGAGGATGGGCCACGTG
CGCCACATGACGCTGCAGTTGCTGGGCATGATGGGCCGCCGCAGCGTGGT
GGACATGATGCATCTGACTGCTGGCCACCGTGGCCAAGTTGTCCTCGTTC
AAGTGGTAGGGATAGGCGCTGTGATGGATCCGCGGGTTGTACACATTCAT
GAGTGAGTCCACGGTGAAGCCGGGATGCTCCACTC

BS01551.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5069-PA 1527 croc-RA 761..1527 785..19 3835 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
croc-RA 2347 CG5069-RA 1046..1812 785..19 3835 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21474668..21475434 19..785 3835 100 Plus
Blast to na_te.dros performed 2015-02-12 03:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2384 452..368 114 61.2 Minus

BS01551.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:38 Download gff for BS01551.3prime
Subject Subject Range Query Range Percent Splice Strand
croc-PA 761..1527 19..785 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:20:16 Download gff for BS01551.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5069-PA 761..1527 19..785 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:13:16 Download gff for BS01551.3prime
Subject Subject Range Query Range Percent Splice Strand
croc-RA 1046..1816 12..785 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:35 Download gff for BS01551.3prime
Subject Subject Range Query Range Percent Splice Strand
croc-RA 1046..1816 12..785 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:35 Download gff for BS01551.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21474664..21475434 12..785 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:13:16 Download gff for BS01551.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21467764..21468534 12..785 99   Plus

BS01551.5prime Sequence

920 bp (798 high quality bases) assembled on 2005-11-29

> BS01551.5prime
GAAGTTATCAGTCGACATGCATACGTTATTCAGCGACCAGAACTCCTTTA
CGCGCCACTATGCCCAGACCGCAGCCGGTTACGGATCCGCATCCGCGGTG
GCGGCGGCCAGCAGCGCCTCCGCTGCAGCAGCGGCACATTACGCATACGA
CCAGTACTCCCGCTATCCGTACTCGGCCAGCGCCTACGGCCTGGGTGCCC
CGCACCAGAACAAGGAGATTGTAAAGCCACCTTACTCGTACATCGCCCTG
ATAGCCATGGCCATCCAGAATGCGGCGGACAAGAAGGTGACCCTGAACGG
GATCTATCAGTACATCATGGAGCGATTTCCCTACTATCGCGACAACAAGC
AGGGCTGGCAGAACTCCATTCGGCACAATCTTAGCCTCAACGAGTGCTTC
GTGAAGGTGGCCCGCGATGACAAGAAGCCCGGCAAGGGCTCCTACTGGAC
TCTGGATCCGGACTCCTACAACATGTTCGACAACGGCTCCTTCCTTCGCC
GGCGTCGCCGCTTCAAGAAGAAGGATGTGATGCGGGAGAAGGAGGAGGCC
ATCAAGCGGCAGGCCATGATGAACGAGAAGCTGGCCGAGATGAAGCCCCT
CAAGCTGATGACCAACGGCATACTGGAGGCCAAGCACATGGCCGCCCATG
CTGCCCACTTCAAAAAGGAGCCCCTAATGGACTTGGGTTGTCTAAGTGGC
AAGGAGGTCTCCCATGCCGCAATGCTCAACTCCTGCCACGACAGCTTGGC
CCAAATGAACCACTTGGCTGGCGGCGGAGTGGAGCATCCCGGCTTCACCG
TGGACTCACTCATGAATGTGTACAACCCGCGGATCCATCACAGCGCCTAT
CCCTACCACTTGAACGAGGACAACTTGGNCACGGTGGCCAGCAGTCAGAT
GCATCATGTCCACCACGCTG

BS01551.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5069-PA 1527 croc-RA 1..904 17..920 4501 99.8 Plus
CG16738-PA 969 slp1-RA 477..534 343..400 165 91.3 Plus
CG1132-PA 1098 fd64A-RA 391..428 344..381 165 97.3 Plus
CG3668-PA 1371 fd59A-RA 384..446 355..417 140 88.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
croc-RA 2347 CG5069-RA 285..1189 16..920 4514 99.9 Plus
fd59A-RA 2228 CG3668-RA 593..876 221..504 325 74.7 Plus
fd64A-RB 1414 CG1132-RB 486..669 223..406 290 77.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21475291..21476195 920..16 4514 99.9 Minus
2L 23513712 2L 3826211..3826373 294..456 245 76.7 Plus
3L 28110227 3L 4020416..4020478 344..406 240 92.1 Plus
3R 32079331 3R 25083588..25083851 224..487 225 72.3 Plus
Blast to na_te.dros performed on 2015-02-10 03:14:50 has no hits.

BS01551.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:39 Download gff for BS01551.5prime
Subject Subject Range Query Range Percent Splice Strand
croc-PA 1..904 17..920 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:20:17 Download gff for BS01551.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5069-PA 1..904 17..920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:37 Download gff for BS01551.5prime
Subject Subject Range Query Range Percent Splice Strand
croc-RA 277..1189 7..920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:14:39 Download gff for BS01551.5prime
Subject Subject Range Query Range Percent Splice Strand
croc-RA 277..1189 7..920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:14:39 Download gff for BS01551.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21475291..21476203 7..920 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:37 Download gff for BS01551.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21468391..21469303 7..920 99   Minus

BS01551.complete Sequence

1561 bp (1561 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634645

> BS01551.complete
GAAGTTATCAGTCGACATGCATACGTTATTCAGCGACCAGAACTCCTTTA
CGCGCCACTATGCCCAGACCGCAGCCGGTTACGGATCCGCATCCGCGGTG
GCGGCGGCCAGCAGCGCCTCCGCTGCAGCAGCGGCACATTACGCATACGA
CCAGTACTCCCGCTATCCGTACTCGGCCAGCGCCTACGGCCTGGGTGCCC
CGCACCAGAACAAGGAGATTGTAAAGCCACCTTACTCGTACATCGCCCTG
ATAGCCATGGCCATCCAGAATGCGGCGGACAAGAAGGTGACCCTGAACGG
GATCTATCAGTACATCATGGAGCGATTTCCCTACTATCGCGACAACAAGC
AGGGCTGGCAGAACTCCATTCGGCACAATCTTAGCCTCAACGAGTGCTTC
GTGAAGGTGGCCCGCGATGACAAGAAGCCCGGCAAGGGCTCCTACTGGAC
TCTGGATCCGGACTCCTACAACATGTTCGACAACGGCTCCTTCCTTCGCC
GGCGTCGCCGCTTCAAGAAGAAGGATGTGATGCGGGAGAAGGAGGAGGCC
ATCAAGCGGCAGGCCATGATGAACGAGAAGCTGGCCGAGATGAAGCCCCT
CAAGCTGATGACCAACGGCATACTGGAGGCCAAGCACATGGCCGCCCATG
CTGCCCACTTCAAAAAGGAGCCCCTAATGGACTTGGGTTGTCTAAGTGGC
AAGGAGGTCTCCCATGCCGCAATGCTCAACTCCTGCCACGACAGCTTGGC
CCAAATGAACCACTTGGCTGGCGGCGGAGTGGAGCATCCCGGCTTCACCG
TGGACTCACTCATGAATGTGTACAACCCGCGGATCCATCACAGCGCCTAT
CCCTACCACTTGAACGAGGACAACTTGGCCACGGTGGCCAGCAGTCAGAT
GCATCATGTCCACCACGCTGCGGCGGCCCATCATGCCCAGCAACTGCAGC
GTCATGTGGCGCACGTGGCCCATCCTCTGACCCCCGGCGGCCAAGGAGCG
GGAGGCCAATCGTCCGGACACTCGCCCACCACGATCTCAACTCCGCATGG
TCCCGCGCACGGGGGTTGGTATACCCCGGAAACGCCACCATCGGAACCCG
TTCCTCACAATGGGCAGCAGGGCACACCCACCCACCCGGGACATAATAAC
AACAACAGCAGCAGCGTACTCAACCACAATGGAGTGGGCAACGGTGGCGG
AGGCGGCGGCGGTGGCGGTGGAGGATCCTCCAGCGTGCTGACCAGCAGTC
CCACATCGGCACTGGGTTTCCGCGACATGATCTTCGAGCAGAACCAATCC
TGCCAACTGGACACCGGTAGTCCCACCGGCAGCCTACAATCCGCCAGTCC
ACCTGCCTCCGCATCCGTGGCAGCGGCATCAGCGGCAGCAGCGGCGGCGG
TGATCAGTAGCCACCACCACCACCATCATCACCATGCGGCGCTTAGCGGG
AACCTGGGCCAGCTGGGTCAGCTGAGCAATCTGAGCCACTACCGACCGCA
TGTGGGCCACTACCAGGAGTACGGCATCAAGTACGGGGTGTAACGAAGCT
TTCTAGACCAT

BS01551.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
croc-RA 1527 CG5069-PA 1..1527 17..1543 7635 100 Plus
fd59A-RA 1371 CG3668-PA 250..533 221..504 310 73.9 Plus
fd64A-RB 1098 CG1132-PB 270..453 223..406 290 77.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
croc-RA 2347 CG5069-RA 285..1812 16..1543 7640 100 Plus
fd64A-RB 1414 CG1132-RB 486..669 223..406 290 77.2 Plus
fd64A-RA 1372 CG1132-RA 444..627 223..406 290 77.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21474668..21476195 1543..16 7640 100 Minus
2L 23513712 2L 3826211..3826373 294..456 245 76.7 Plus
3L 28110227 3L 4020416..4020478 344..406 240 92.1 Plus
3R 32079331 3R 25083588..25083851 224..487 225 72.3 Plus
3R 32079331 3R 25095286..25095380 356..450 190 80 Plus
3R 32079331 3R 28583744..28583849 406..301 185 78.3 Minus
Blast to na_te.dros performed 2014-11-27 10:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2384 1110..1194 114 61.2 Plus

BS01551.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:39 Download gff for BS01551.complete
Subject Subject Range Query Range Percent Splice Strand
croc-RA 1..1527 17..1543 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:25 Download gff for BS01551.complete
Subject Subject Range Query Range Percent Splice Strand
croc-RA 354..1893 7..1550 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:25:25 Download gff for BS01551.complete
Subject Subject Range Query Range Percent Splice Strand
croc-RA 286..1813 17..1545 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:40 Download gff for BS01551.complete
Subject Subject Range Query Range Percent Splice Strand
croc-RA 354..1893 7..1550 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:06 Download gff for BS01551.complete
Subject Subject Range Query Range Percent Splice Strand
croc-RA 286..1813 17..1545 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:06 Download gff for BS01551.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21474667..21476194 17..1545 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:25:25 Download gff for BS01551.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21467767..21469294 17..1545 99   Minus

BS01551.pep Sequence

Translation from 16 to 1542

> BS01551.pep
MHTLFSDQNSFTRHYAQTAAGYGSASAVAAASSASAAAAAHYAYDQYSRY
PYSASAYGLGAPHQNKEIVKPPYSYIALIAMAIQNAADKKVTLNGIYQYI
MERFPYYRDNKQGWQNSIRHNLSLNECFVKVARDDKKPGKGSYWTLDPDS
YNMFDNGSFLRRRRRFKKKDVMREKEEAIKRQAMMNEKLAEMKPLKLMTN
GILEAKHMAAHAAHFKKEPLMDLGCLSGKEVSHAAMLNSCHDSLAQMNHL
AGGGVEHPGFTVDSLMNVYNPRIHHSAYPYHLNEDNLATVASSQMHHVHH
AAAAHHAQQLQRHVAHVAHPLTPGGQGAGGQSSGHSPTTISTPHGPAHGG
WYTPETPPSEPVPHNGQQGTPTHPGHNNNNSSSVLNHNGVGNGGGGGGGG
GGGSSSVLTSSPTSALGFRDMIFEQNQSCQLDTGSPTGSLQSASPPASAS
VAAASAAAAAAVISSHHHHHHHHAALSGNLGQLGQLSNLSHYRPHVGHYQ
EYGIKYGV*

BS01551.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
croc-PA 508 CG5069-PA 1..508 1..508 2729 100 Plus
fd59A-PA 456 CG3668-PA 8..188 1..173 400 47.8 Plus
fkh-PD 510 CG10002-PD 154..424 23..296 398 36.1 Plus
fkh-PB 510 CG10002-PB 154..424 23..296 398 36.1 Plus
fkh-PA 510 CG10002-PA 154..424 23..296 398 36.1 Plus