Clone BS01555 Report

Search the DGRC for BS01555

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:15
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG8924-RB
Protein status:BS01555.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01555.3prime Sequence

836 bp (776 high quality bases) assembled on 2005-11-29

> BS01555.3prime
ATGGTCTAGAAAGCTTCGTTAGATCATGTGCAGCTTCTGATCGTTGAGTT
TGAATGCCGCCGCATCGCTATGGAGGTGAAAAGGCACAATATCACCTGTT
GTGGCCATATCAAATGATGGTGACATAGACGTTGCCGTTGCAGTTGCCGG
ACTATTGCTGCCACTGGTATTTGCGATGCCCGCCTTGAGATGTAGGCTGT
CCATGGACATTTGCTGAGACTGCGTGTGAGGAAGGGGATTGGTGTGGATA
TGCGGATGGGCTGGGGGATGAGTTATGCTCGCTGGGACGGTTGAGAGTTT
TCCTGAGTTTGTTGTGATTATTATGTTTCCGGCATGGGAAGCACCACGTC
CACGTTTCCGCTTCGGAAGAATTCCTTTTCGCGCCATATAGAAACGAATG
GTTGAGACAGGAATATTGAACATATTGCTGACAGTTTGGAATGTCTCGCC
CTTCGAAACACATTTGGCCGCTTGTGCTAGAGATGCTTCTGAACGTCGAA
CGCGCTTATATGAAGTATAACCATCGATCGAGCTATGGCTCAGTCCTCCG
GAAGTATTGGCCGATGTATCGAGATCAGTGTCAAGGCTGAGGGATAGCCC
GGATCCGCATGGCACTCCTGTCGCAAAACTGCTGTCATTGTTTTCATCAT
GAGCGGCCACATAGTTGTGGTCGTCCTCAACATTTGAATCCAAGTATTGC
TGCTGCTGAAGCTGCATTTGCATCCTCGCCTGCTGCAGGGATAGGTGGAC
ATTCATTTTGTTGTCAACGGCTTGCGCAGATATATTGCAATCATCGAATT
GCTCCCCGTAGGCATTTCCATTGTTCGGCACCTCGT

BS01555.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8924-PB 1545 CG8924-RB 728..1545 836..19 4040 99.7 Minus
CG8924-PA 1545 CG8924-RA 728..1545 836..19 4040 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8924-RB 2575 CG8924-RB 1364..2182 836..18 4065 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15943348..15944056 726..18 3545 100 Minus
X 23542271 X 15943179..15943291 836..724 535 98.2 Minus
Blast to na_te.dros performed 2015-02-06 15:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
baggins 5453 baggins BAGGINS 5453bp 1368..1426 610..553 112 67.8 Minus

BS01555.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:45 Download gff for BS01555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8924-PA 728..1545 19..836 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:20:26 Download gff for BS01555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8924-PA 728..1545 19..836 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:17:47 Download gff for BS01555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8924-RB 1364..2187 13..836 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:03:23 Download gff for BS01555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8924-RB 1364..2187 13..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:03:23 Download gff for BS01555.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15943179..15943290 725..836 98 -> Minus
X 15943350..15944061 13..724 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:17:47 Download gff for BS01555.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15837212..15837323 725..836 98 -> Minus
arm_X 15837383..15838094 13..724 99   Minus

BS01555.5prime Sequence

906 bp (700 high quality bases) assembled on 2005-11-29

> BS01555.5prime
GAAGTTATCAGTCGACATGAGCGGCGCTACACAGGAATTTTGTGTACGCT
GGAACAGCCATTTGGGCAGCATTGGAGCTGCTTTTCCGCAGCTGCTAGCA
GGCCAGAGATTCGTGGATGTAACACTCGCATGCGAAGGCCAACAGGTGCA
CTGCCATCGTCTGGTGTTGGCCGCTTGTTCCACCTACTTTGAGGCAATAC
TAGCGGAGCATCCTTGCAAGCACCCGGTCATCATATTGCCCAGGGAGATC
AAGCTATGGGAGATCCAGGCGCTTGTGGACTTCATGTACAAGGGAGAGGT
CAATGTCACGCAAGCCGGTCTTGGCCAGTTGCTTCGCTGTGCCGAACAAC
TGCAGATTCGCGGTCTATACGGCTCTGAGGCACCGATAAACTACAAGAAA
CTCCAGCAGGCGAGTCTCGAGGCTGCTAAGGATCCAGCTGCAACCACAGC
GCGAAGCTTCAAGCATGTGGACAGCGCGGAAACGGACGATGCAGCCACTA
ATTCAACCACCTCAACAACAATGACCACCTCCTCCGCTCCACCGCTACCG
GTTAACCATCAGCAACCCACAGTATTGAAGCGCCAGAATCCCGATGCTCG
GCAGCAGCAGCAACAGCAGCAGCAGCAGCAGGTGCAGCAGCGACCCCAGA
TAAATGGCAGTAATGCTCAACAGCCATCTAAGGCCACCTCTACGAACGTT
TTGGGCAGCCACTCGAATGCACCAACCGAGGATGACTCCGGCGACGAGGT
GCCGAACAATTGGAATGCCTACGGGGAGCAATTCGATGATTGCAATATAT
CTGCGCAAGCCGTTGAACACAAAATGAATGTCCACCTATCCCTGCAGCAG
GCGAGGATGCAAATGCAGCTTCAGCAGCAGCAATACTTGGATTCAAATGG
TGAGGA

BS01555.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8924-PB 1545 CG8924-RB 1..890 17..906 4375 99.6 Plus
CG8924-PA 1545 CG8924-RA 1..890 17..906 4375 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8924-RB 2575 CG8924-RB 637..1526 17..906 4405 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15942452..15943291 17..856 4170 99.8 Plus
X 23542271 X 15943348..15943400 854..906 250 98.1 Plus
Blast to na_te.dros performed on 2015-02-10 03:12:51 has no hits.

BS01555.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:47 Download gff for BS01555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8924-PA 1..889 17..905 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:20:27 Download gff for BS01555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8924-PA 1..889 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:45:26 Download gff for BS01555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8924-RB 626..1525 5..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:14:23 Download gff for BS01555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8924-RB 626..1525 5..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:14:23 Download gff for BS01555.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15942441..15943290 5..855 99 -> Plus
X 15943350..15943399 856..905 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:45:26 Download gff for BS01555.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15836474..15837323 5..855 99 -> Plus
arm_X 15837383..15837432 856..905 98   Plus

BS01555.complete Sequence

1579 bp (1579 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634646

> BS01555.complete
GAAGTTATCAGTCGACATGAGCGGCGCTACACAGGAATTTTGTGTACGCT
GGAACAGCCATTTGGGCAGCATTGGAGCTGCTTTTCCGCAGCTGCTAGCA
GGCCAGAGATTCGTGGATGTAACACTCGCATGCGAAGGCCAACAGGTGCA
CTGCCATCGTCTGGTGTTGGCCGCTTGTTCCACCTACTTTGAGGCAATAC
TAGCGGAGCATCCTTGCAAGCACCCGGTCATCATATTGCCCAGGGAGATC
AAGCTATGGGAGATCCAGGCGCTTGTGGACTTCATGTACAAGGGAGAGGT
CAATGTCACGCAAGCCGGTCTTGGCCAGTTGCTTCGCTGTGCCGAACAAC
TGCAGATTCGCGGTCTATACGGCTCTGAGGCACCGATAAACTACAAGAAA
CTCCAGCAGGCGAGTCTCGAGGCTGCTAAGGATCCAGCTGCAACCACAGC
GCGAAGCTTCAAGCATGTGGACAGCGCGGAAACGGACGATGCAGCCACTA
ATTCAACCACCTCAACAACAATGACCACCTCCTCCGCTCCACCGCTACCG
GTTAACCATCAGCAACCCACAGTATTGAAGCGCCAGAATCCCGATGCTCG
GCAGCAGCAGCAACAGCAGCAGCAGCAGCAGGTGCAGCAGCGACCCCAGA
TAAATGGCAGTAATGCTCAACAGCCATCTAAGGCCACCTCTACGAACGTT
TTGGGCAGCCACTCGAATGCACCAACCGAGGATGACTCCGGCGACGAGGT
GCCGAACAATTGGAATGCCTACGGGGAGCAATTCGATGATTGCAATATAT
CTGCGCAAGCCGTTGACAACAAAATGAATGTCCACCTATCCCTGCAGCAG
GCGAGGATGCAAATGCAGCTTCAGCAGCAGCAATACTTGGATTCAAATGT
TGAGGACGACCACAACTATGTGGCCGCTCATGATGAAAACAATGACAGCA
GTTTTGCGACAGGAGTGCCATGCGGATCCGGGCTATCCCTCAGCCTTGAC
ACTGATCTCGATACATCGGCCAATACTTCCGGAGGACTGAGCCATAGCTC
GATCGATGGTTATACTTCATATAAGCGCGTTCGACGTTCAGAAGCATCTC
TAGCACAAGCGGCCAAATGTGTTTCGAAGGGCGAGACATTCCAAACTGTC
AGCAATATGTTCAATATTCCTGTCTCAACCATTCGTTTCTATATGGCGCG
AAAAGGAATTCTTCCGAAGCGGAAACGTGGACGTGGTGCTTCCCATGCCG
GAAACATAATAATCACAACAAACTCAGGAAAACTCTCAACCGTCCCAGCG
AGCATAACTCATCCCCCAGCCCATCCGCATATCCACACCAATCCCCTTCC
TCACACGCAGTCTCAGCAAATGTCCATGGACAGCCTACATCTCAAGGCGG
GCATCGCAAATACCAGTGGCAGCAATAGTCCGGCAACTGCAACGGCAACG
TCTATGTCACCATCATTTGATATGGCCACAACAGGTGATATTGTGCCTTT
TCACCTCCATAGCGATGCGGCGGCATTCAAACTCAACGATCAGAAGCTGC
ACATGATCTAACGAAGCTTTCTAGACCAT

BS01555.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8924-RB 1545 CG8924-PB 1..1545 17..1561 7725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8924-RB 2575 CG8924-RB 637..2182 17..1562 7730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15942452..15943291 17..856 4200 100 Plus
X 23542271 X 15943348..15944056 854..1562 3545 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:18:29 has no hits.

BS01555.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:25 Download gff for BS01555.complete
Subject Subject Range Query Range Percent Splice Strand
CG8924-RA 1..1545 17..1561 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:08 Download gff for BS01555.complete
Subject Subject Range Query Range Percent Splice Strand
CG8924-RA 796..2357 5..1567 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:30 Download gff for BS01555.complete
Subject Subject Range Query Range Percent Splice Strand
CG8924-RB 637..2182 17..1563 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:26 Download gff for BS01555.complete
Subject Subject Range Query Range Percent Splice Strand
CG8924-RA 796..2357 5..1567 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:15 Download gff for BS01555.complete
Subject Subject Range Query Range Percent Splice Strand
CG8924-RB 637..2182 17..1563 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:15 Download gff for BS01555.complete
Subject Subject Range Query Range Percent Splice Strand
X 15942452..15943290 17..855 100 -> Plus
X 15943350..15944056 856..1563 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:30 Download gff for BS01555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15836485..15837323 17..855 100 -> Plus
arm_X 15837383..15838089 856..1563 99   Plus

BS01555.pep Sequence

Translation from 16 to 1560

> BS01555.pep
MSGATQEFCVRWNSHLGSIGAAFPQLLAGQRFVDVTLACEGQQVHCHRLV
LAACSTYFEAILAEHPCKHPVIILPREIKLWEIQALVDFMYKGEVNVTQA
GLGQLLRCAEQLQIRGLYGSEAPINYKKLQQASLEAAKDPAATTARSFKH
VDSAETDDAATNSTTSTTMTTSSAPPLPVNHQQPTVLKRQNPDARQQQQQ
QQQQQVQQRPQINGSNAQQPSKATSTNVLGSHSNAPTEDDSGDEVPNNWN
AYGEQFDDCNISAQAVDNKMNVHLSLQQARMQMQLQQQQYLDSNVEDDHN
YVAAHDENNDSSFATGVPCGSGLSLSLDTDLDTSANTSGGLSHSSIDGYT
SYKRVRRSEASLAQAAKCVSKGETFQTVSNMFNIPVSTIRFYMARKGILP
KRKRGRGASHAGNIIITTNSGKLSTVPASITHPPAHPHIHTNPLPHTQSQ
QMSMDSLHLKAGIANTSGSNSPATATATSMSPSFDMATTGDIVPFHLHSD
AAAFKLNDQKLHMI*

BS01555.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8924-PB 514 CG8924-PB 1..514 1..514 2673 100 Plus
br-PL 514 CG11491-PL 4..239 5..236 353 34.7 Plus
br-PJ 514 CG11491-PN 4..239 5..236 353 34.7 Plus
br-PO 663 CG11491-PO 4..239 5..236 353 34.7 Plus
br-PG 663 CG11491-PG 4..239 5..236 353 34.7 Plus