Clone BS01571 Report

Search the DGRC for BS01571

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:15
Well:71
Vector:pDNR-Dual
Associated Gene/Transcriptsob-RA
Protein status:BS01571.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01571.3prime Sequence

785 bp (740 high quality bases) assembled on 2005-11-29

> BS01571.3prime
ATGGTCTAGAAAGCTTCGTCAATCGCTGACGGCCACCAAATCTCTGGAGG
ATGCTGCAGTACTGGCGGAGCCCGTGGGCAAGCCCAACTCCGAGCTGGAG
CTGGAGCCGGAGCCAAATGGATCACTTAGGTTGCCACCCACCACACCGCC
CACTCCGGCGGACAAGTTATGCGTCAGGCTGTGACGTCGCAAGTCGCAGT
TCCGCCGGAAGACTTTCCCGCAGGAGGCGCAGTTGTACGGCTTGATGTCG
GTGTGGGTGAGCAGGTGGGTCTTCAGATTGGAACGCTGGTTGAAGGAGCG
ATTGCACACGGGGCACTTGTGCGGCGACTCCTCCATGTGCAGGATCTTGT
GGACAGCCAGAGTGCGGGACTGACAGAATCCCTTGCCGCACTCCGCGCAC
TTGAAGGGCTTCTCCTTGGAGTGGATATATCTATGATCCCTCAGATGATC
CTGCCTCCTGAAGGCCTTGCCGCAGATGTCGCAGGAGTAAGGCCTCTCGT
CCGTGTGCGTTCTTTCGTGGATGAGCAGATTGTAGGACTTGGTGAACTGT
CGGTTGCAGAATTTGCATATGAACTGCTTCTTGGACCGCTGGGCTGCCGC
TGCCGCCGCCGAGCTGCCCGCCTCCTCCAGCCCTCCTACCGCACCTGCAC
CTACGCCGCCAGCCGCTCCCGAAATGACACTCATCTTGTCCTGGTACATG
GTGGCCTGCAGCGAGTGCAGAGCCGAGTCCGTTTCCGCCTGGCTGAAGGC
TGAGGGATTAAACATGAAGCTTCCATAGCTGCTGT

BS01571.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3242-PA 1737 sob-RA 971..1737 785..19 3835 100 Minus
CG3851-PA 1179 odd-RA 649..789 582..442 405 91.4 Minus
CG10021-PB 2235 bowl-RB 709..911 576..374 390 87.6 Minus
CG10021-PC 2235 bowl-RC 709..911 576..374 390 87.6 Minus
CG10021-PD 2235 bowl-RD 709..911 576..374 390 87.6 Minus
CG10021-PA 2235 bowl-RA 709..911 576..374 390 87.6 Minus
CG10021-PB 2235 bowl-RB 926..1034 359..251 270 89.9 Minus
CG10021-PC 2235 bowl-RC 926..1034 359..251 270 89.9 Minus
CG10021-PD 2235 bowl-RD 926..1034 359..251 270 89.9 Minus
CG10021-PA 2235 bowl-RA 926..1034 359..251 270 89.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
sob-RA 2611 CG3242-RA 1561..2327 785..19 3835 100 Minus
bowl-RH 3435 CG10021-RH 1059..1454 589..194 1065 84.9 Minus
bowl-RG 3394 CG10021-RG 1018..1413 589..194 1065 84.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3578297..3578710 19..432 2070 100 Plus
2L 23513712 2L 3578855..3579209 431..785 1775 100 Plus
2L 23513712 2L 3605205..3605524 263..582 820 83.8 Plus
2L 23513712 2L 3781905..3782140 429..194 625 84.3 Minus
2L 23513712 2L 3780421..3780576 589..434 450 85.9 Minus
Blast to na_te.dros performed on 2015-02-06 15:55:26 has no hits.

BS01571.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:55 Download gff for BS01571.3prime
Subject Subject Range Query Range Percent Splice Strand
sob-PA 971..1737 19..785 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:20:39 Download gff for BS01571.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3242-PA 971..1737 19..785 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:18:12 Download gff for BS01571.3prime
Subject Subject Range Query Range Percent Splice Strand
sob-RA 1561..2327 19..785 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:04:06 Download gff for BS01571.3prime
Subject Subject Range Query Range Percent Splice Strand
sob-RA 1561..2327 19..785 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:04:06 Download gff for BS01571.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3578296..3578708 18..430 99 <- Plus
2L 3578855..3579209 431..785 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:18:12 Download gff for BS01571.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3578296..3578708 18..430 99 <- Plus
arm_2L 3578855..3579209 431..785 100   Plus

BS01571.5prime Sequence

827 bp (826 high quality bases) assembled on 2005-11-29

> BS01571.5prime
GAAGTTATCAGTCGACATGGAGGCAGTTAAGCATTTGAGTGCCGCTGCTG
CTGCTGCAGCTGCAGCTGCAACTTGCAGCGATTCGCCGGCCAAGGCAGCA
GCCTCACCGGCAGCAAGCAGCGATATTGCCGAGGCGCTTGGAGAACTCAA
GGCAAGCGCAACAGCAGCAGCATCATCAGCTAGCAAGGCAGCAACATCGA
AGCACCACAGCAACAACAACCACAAGCCAAGTGCCGCAGCAACAGCCACA
GCAGCGCACAAGAAAAGCGAGAGTTGCAACAGCAACGGCAACAAGTGCAC
CGCTGCAACATCGCCGATCGGCAGTAAGACCAGCAACGCAGCCATGGCAG
CTGCAACAGCAACGGCGGCCGCAGCAACCAACGATCTTGCAGCGGCTGCT
GCGGTCGTTCTTTCGCTGCAAGGAACCATGGTCAGCAGTTTGCAGCAGGC
CGCCCTACTGCCGGCCAATTCGGCGGCAGCAGCAGCTCTTAATCTCCAGG
CCCTGGAATCCTATTTGGCGCTGCAGCGACTAACCGGGAAATCGGATGTA
TTTCGCTTTTCCAACAGCAACACCGGCAGCAGCAACAGCAACAACGCCAC
CACCTGCAACAGCAGCAGCAGTGAAGCGGACAACAATGCCTTACCCTCGC
TCATCGATATAGCCAATATAGAGCTCAAGTCGAGCTGCTCCTCCAGCTCC
TCGGGGGAACCCCCTTTGACGGCAGCGACAGCATCAGCTGCCGCCACATC
CTCGCCCAGCAGCAACAACAGCAACTCCACCAGCACACCAACAACATCCA
AGTGCGTGCCTCTGCCCTCCATTGGCA

BS01571.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3242-PA 1737 sob-RA 1..811 17..827 4055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:19:14
Subject Length Description Subject Range Query Range Score Percent Strand
sob-RA 2611 CG3242-RA 591..1401 17..827 4055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3579369..3580179 827..17 4055 100 Minus
Blast to na_te.dros performed 2015-02-04 04:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2274..2877 23..643 316 55.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2750..2974 142..379 238 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6857 266..393 219 66.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2443..2665 560..785 213 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1524..1599 723..796 186 73.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6800 723..798 171 72.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6738..7019 329..610 165 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6875 719..798 164 69.9 Plus
roo 9092 roo DM_ROO 9092bp 1079..1154 723..795 164 73.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2361..2436 720..798 162 70.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2324..2400 719..798 159 70.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6844..6923 719..795 158 70 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 98..224 702..824 155 63.3 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9128..9254 702..824 155 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6745..6821 719..798 150 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6791 327..402 141 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2376 731..798 140 70.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1581 735..798 139 72.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6531..6766 560..800 135 56.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6779 757..798 131 81.4 Plus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 538..622 792..702 127 62.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1502..1560 741..798 121 69.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2367 757..798 113 76.7 Plus

BS01571.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:57 Download gff for BS01571.5prime
Subject Subject Range Query Range Percent Splice Strand
sob-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:20:40 Download gff for BS01571.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3242-PA 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:09:48 Download gff for BS01571.5prime
Subject Subject Range Query Range Percent Splice Strand
sob-RA 591..1400 17..826 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:50:58 Download gff for BS01571.5prime
Subject Subject Range Query Range Percent Splice Strand
sob-RA 591..1400 17..826 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:50:58 Download gff for BS01571.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3579370..3580177 19..826 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:09:48 Download gff for BS01571.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3579370..3580177 19..826 100 <- Minus

BS01571.complete Sequence

1771 bp (1771 high quality bases) assembled on 2005-06-23

GenBank Submission: FJ634648

> BS01571.complete
GAAGTTATCAGTCGACATGGAGGCAGTTAAGCATTTGAGTGCCGCTGCTG
CTGCTGCAGCTGCAGCTGCAACTTGCAGCGATTCGCCGGCCAAGGCAGCA
GCCTCACCGGCAGCAAGCAGCGATATTGCCGAGGCGCTTGGAGAACTCAA
GGCAAGCGCAACAGCAGCAGCATCATCAGCTAGCAAGGCAGCAACATCGA
AGCACCACAGCAACAACAACCACAAGCCAAGTGCCGCAGCAACAGCCACA
GCAGCGCACAAGAAAAGCGAGAGTTGCAACAGCAACGGCAACAAGTGCAC
CGCTGCAACATCGCCGATCGGCAGTAAGACCAGCAACGCAGCCATGGCAG
CTGCAACAGCAACGGCGGCCGCAGCAACCAACGATCTTGCAGCGGCTGCT
GCGGTCGTTCTTTCGCTGCAAGGAACCATGGTCAGCAGTTTGCAGCAGGC
CGCCCTACTGCCGGCCAATTCGGCGGCAGCAGCAGCTCTTAATCTCCAGG
CCCTGGAATCCTATTTGGCGCTGCAGCGACTAACCGGGAAATCGGATGTA
TTTCGCTTTTCCAACAGCAACACCGGCAGCAGCAACAGCAACAACGCCAC
CACCTGCAACAGCAGCAGCAGTGAAGCGGACAACAATGCCTTACCCTCGC
TCATCGATATAGCCAATATAGAGCTCAAGTCGAGCTGCTCCTCCAGCTCC
TCGGGGGAACCCCCTTTGACGGCAGCGACAGCATCAGCTGCCGCCACATC
CTCGCCCAGCAGCAACAACAGCAACTCCACCAGCACACCAACAACATCCA
AGTGCGTGCCTCTGCCCTCCATTGGCACCGTTAGTGCTGCAGTGGCGGCT
GCTGCGGCTGCCGCAGCAGCTGCTGCGAGCCAACAGGCGGCGCTGGACTG
CGCAACAGCCGCAGAACTGGCAGCAGAGTGCGACTTACCGTTGCTCGATG
GCGAGGATGCTCTCTCCTTCGAGGCGGGAGATTTGGACAGCAGCTATGGA
AGCTTCATGTTTAATCCCTCAGCCTTCAGCCAGGCGGAAACGGACTCGGC
TCTGCACTCGCTGCAGGCCACCATGTACCAGGACAAGATGAGTGTCATTT
CGGGAGCGGCTGGCGGCGTAGGTGCAGGTGCGGTAGGAGGGCTGGAGGAG
GCGGGCAGCTCGGCGGCGGCAGCGGCAGCCCAGCGGTCCAAGAAGCAGTT
CATATGCAAATTCTGCAACCGACAGTTCACCAAGTCCTACAATCTGCTCA
TCCACGAAAGAACGCACACGGACGAGAGGCCTTACTCCTGCGACATCTGC
GGCAAGGCCTTCAGGAGGCAGGATCATCTGAGGGATCATAGATATATCCA
CTCCAAGGAGAAGCCCTTCAAGTGCGCGGAGTGCGGCAAGGGATTCTGTC
AGTCCCGCACTCTGGCTGTCCACAAGATCCTGCACATGGAGGAGTCGCCG
CACAAGTGCCCCGTGTGCAATCGCTCCTTCAACCAGCGTTCCAATCTGAA
GACCCACCTGCTCACCCACACCGACATCAAGCCGTACAACTGCGCCTCCT
GCGGGAAAGTCTTCCGGCGGAACTGCGACTTGCGACGTCACAGCCTGACG
CATAACTTGTCCGCCGGAGTGGGCGGTGTGGTGGGTGGCAACCTAAGTGA
TCCATTTGGCTCCGGCTCCAGCTCCAGCTCGGAGTTGGGCTTGCCCACGG
GCTCCGCCAGTACTGCAGCATCCTCCAGAGATTTGGTGGCCGTCAGCGAT
TGACGAAGCTTTCTAGACCAT

BS01571.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
sob-RA 1737 CG3242-PA 1..1737 17..1753 8685 100 Plus
bowl-RH 2235 CG10021-PH 696..1091 1183..1578 1065 84.6 Plus
bowl-RG 2235 CG10021-PG 696..1091 1183..1578 1065 84.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
sob-RA 2611 CG3242-RA 591..2327 17..1753 8685 100 Plus
bowl-RH 3435 CG10021-RH 1059..1454 1183..1578 1065 84.6 Plus
bowl-RG 3394 CG10021-RG 1018..1413 1183..1578 1065 84.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3578855..3580179 1341..17 6625 100 Minus
2L 23513712 2L 3578297..3578710 1753..1340 2070 100 Minus
2L 23513712 2L 3605205..3605524 1509..1190 820 83.8 Minus
2L 23513712 2L 3781905..3782140 1343..1578 625 84.3 Plus
2L 23513712 2L 3780421..3780576 1183..1338 450 85.9 Plus
Blast to na_te.dros performed 2014-11-28 01:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2750..2974 142..379 238 62.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6857 266..393 219 66.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1524..1599 723..796 186 73.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6738..7019 329..610 165 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6875 719..798 164 69.9 Plus
roo 9092 roo DM_ROO 9092bp 1079..1154 723..795 164 73.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2361..2436 720..798 162 70.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6531..6889 560..926 162 55.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6844..6923 719..795 158 70 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 98..224 702..824 155 63.3 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9128..9254 702..824 155 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6791 327..402 141 70.5 Plus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 538..622 792..702 127 62.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1502..1560 741..798 121 69.5 Plus

BS01571.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:28 Download gff for BS01571.complete
Subject Subject Range Query Range Percent Splice Strand
sob-RA 1..1737 17..1753 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:09 Download gff for BS01571.complete
Subject Subject Range Query Range Percent Splice Strand
sob-RA 588..2324 17..1753 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:05 Download gff for BS01571.complete
Subject Subject Range Query Range Percent Splice Strand
sob-RA 591..2327 17..1755 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:28 Download gff for BS01571.complete
Subject Subject Range Query Range Percent Splice Strand
sob-RA 588..2324 17..1753 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:44 Download gff for BS01571.complete
Subject Subject Range Query Range Percent Splice Strand
sob-RA 591..2327 17..1755 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:44 Download gff for BS01571.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3578294..3578708 1342..1755 99 <- Minus
2L 3578855..3580179 17..1341 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:05 Download gff for BS01571.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3578294..3578708 1342..1755 99 <- Minus
arm_2L 3578855..3580179 17..1341 100   Minus

BS01571.pep Sequence

Translation from 16 to 1752

> BS01571.pep
MEAVKHLSAAAAAAAAAATCSDSPAKAAASPAASSDIAEALGELKASATA
AASSASKAATSKHHSNNNHKPSAAATATAAHKKSESCNSNGNKCTAATSP
IGSKTSNAAMAAATATAAAATNDLAAAAAVVLSLQGTMVSSLQQAALLPA
NSAAAAALNLQALESYLALQRLTGKSDVFRFSNSNTGSSNSNNATTCNSS
SSEADNNALPSLIDIANIELKSSCSSSSSGEPPLTAATASAAATSSPSSN
NSNSTSTPTTSKCVPLPSIGTVSAAVAAAAAAAAAAASQQAALDCATAAE
LAAECDLPLLDGEDALSFEAGDLDSSYGSFMFNPSAFSQAETDSALHSLQ
ATMYQDKMSVISGAAGGVGAGAVGGLEEAGSSAAAAAAQRSKKQFICKFC
NRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHRYIHSKEKP
FKCAECGKGFCQSRTLAVHKILHMEESPHKCPVCNRSFNQRSNLKTHLLT
HTDIKPYNCASCGKVFRRNCDLRRHSLTHNLSAGVGGVVGGNLSDPFGSG
SSSSSELGLPTGSASTAASSRDLVAVSD*

BS01571.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
sob-PA 578 CG3242-PA 1..578 1..578 2900 100 Plus
bowl-PH 744 CG10021-PH 211..384 367..545 779 81 Plus
bowl-PG 744 CG10021-PG 211..384 367..545 779 81 Plus
bowl-PF 744 CG10021-PF 211..384 367..545 779 81 Plus
bowl-PA 744 CG10021-PA 211..384 367..545 779 81 Plus