Clone Sequence Records
BS01573.3prime Sequence
912 bp (803 high quality bases) assembled on 2005-11-29
> BS01573.3prime
ATGGTCTAGAAAGCTTCGTTATTTCTTTAGGTTGTGAAGTCGCAAGTGCT
TTTTTAAGCTCTTCTGGGAGAAAAATCCCTCTGGACATTGCGGGCATGGG
TGGGGTCGAATCTTGTGGCTTGTGATATGCTTATCCAGGGTCTTTTTTAA
AGCAAACCTGACGTCGCAGTGCGGGCATTGGTGCAGCGTTTTTGGCTCAT
CCGGGTTTTTGTGCGTCTTCTCGTGACCCCGTAAGCTCTGCTGAGTGTCA
TAGGCTTTGGGACACTGAGAACATTTAAATGGCCGATCATTATTGTCCAC
GTGCCAAAGGGTATGCTTCATCAGTGACTGATTCGCACTGAAACCCTTGC
CGCACTGGTCGCACTTGTAGGGCTTTTCGCCTGTATGGATGCGTAGATGA
CTCTTAAGGTGATGGTTGTGGGAAAAGGCTTGGCCGCACTCCTCACATTT
AAATGGCTTTATACCCGAATGGGTTCGCTGATGTTTCATCATGTTCGATT
TCTCGAAGAACGACTTGTCGCAGTCGGGGCACTTGAACTGGCGATCCCCG
TTGTGGACCCGCAAATGGGTAATCAAATGCTGGTTCTGTACGAATCCCTT
GCCGCAGAGCTCACATTTAAAGGGTCGCTCTTCCTTGTGCAGACGGCTAT
GCAACTTAAGGCCAGAGTTTTTGGCAAAGGTTTGTGGGCAGTCGGGACAC
TTATAGGGTCGTTCGCCAGTGTGCCTCTGTATATGGGCCCTAAGATTGCC
TCTCGTGTAAAAGGTTTTGTCGCACTGTGGACATTTGTGACCCTTTTCCT
CGTCGTGGGTGTGCATATGCGACTTCAGAGTCGGACCGTGCGTATAAGCT
TTCGGGCAGAGGGGGCATTTAAAGGACGCTCTCCAGTATGACGGCGTCTA
TGGGTCGTTAGC
BS01573.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8474-PA | 1752 | Meics-RA | 898..1752 | 873..19 | 4275 | 100 | Minus |
| CG8474-PA | 1752 | Meics-RA | 858..899 | 912..871 | 210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Meics-RB | 1904 | CG8474-RB | 895..1789 | 912..19 | 4450 | 99.9 | Minus |
| Meics-RA | 1940 | CG8474-RA | 931..1825 | 912..19 | 4450 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13962773..13963667 | 19..912 | 4425 | 99.9 | Plus |
Blast to na_te.dros performed 2015-01-31 15:38:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R2-element | 3607 | R2-element DMRER2DM 3607bp Derived from X51967 (g8432) (Rel. 24, Last updated, Version 1). | 2978..3029 | 342..291 | 116 | 69.2 | Minus |
BS01573.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:58 Download gff for
BS01573.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-PA | 858..1752 | 19..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:20:41 Download gff for
BS01573.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8474-PA | 858..1752 | 19..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:28:48 Download gff for
BS01573.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 931..1834 | 11..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:44:01 Download gff for
BS01573.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 931..1834 | 11..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:44:01 Download gff for
BS01573.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13962764..13963667 | 11..912 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:28:48 Download gff for
BS01573.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13955864..13956767 | 11..912 | 99 | | Plus |
BS01573.5prime Sequence
937 bp (768 high quality bases) assembled on 2005-11-29
> BS01573.5prime
GAAGTTATCAGTCGACATGGTTGGGAGATCATCGGGAAAAATGGAAAGAT
CAGTGGACGCCAGCATGGGAAAGAACTGCCGAGCCTGCGCCGAACACTCA
TCCATACTGGTGGACCTTTTCTCCAAGGAGATCTCTGATCCCCCCATTTG
GGAAATGTTGAACTCAATTCTGCCGGAGATCTGTCGCGTGAAACGGGATG
AAATGCCACAAAAGATCTGTCCTACCTGCCTGGTGGCCGCTCAAAATGCC
TTTCACTTCCGTCACAAGTGTGAGCAGAGTTTTCAGTTCTTTTCCCAGCT
CCTCCAGCTCGATAAATCAAACTCAAATCTGAGTAGATCCCATTGCAGAA
GAGGTACTATGAACCCATTAATACCCTTCGAGATAGTTGGTTGCGAGGAT
CCATTGGACACAAATGTAACCAAATTGGACGCTAATCGGCCTGATGTAAA
AACTGATATCGATGAGCCAACCGATGGAAAGGCAACTAATGGTCAGGAGA
GTGAACCATTGCAAGAAGTTTTTGAAATAACAATGAACGATATTAAAACG
GAAGATGAAGTATCCATTCAGGAGACATTTGAAGATGCCTTTGATGAAGA
AAATGATAATAACAATACTGATAGCGAAAGGGAGGATTCAGACCAATGGA
CAGTGGGCTCGACTGAAGACCAAGATGAACCCTGGATTCCCGGCGGCGGA
GGGCGCCAAACGGTTGGCGGCAATAATCAATCGCTTCTGTGCACAGAGTG
TGGAGTGAGTTACTCGACTCAAAAGGCGTTGGCAAGGCACGTTGCCAAGC
ACAAGGGAGCAGGTGATACACAAAAGCCGCACCTCTGCGATTTCTGCGGT
CGGGGGATTTCGTACCAATGCCCAGCTAACGACCCATAGACGCCGTCATA
CTGGAGAGCGTCCTTTTTAATGCCCCCTCTGCCCGAA
BS01573.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8474-PA | 1752 | Meics-RA | 1..790 | 17..806 | 3950 | 100 | Plus |
| CG8474-PA | 1752 | Meics-RA | 836..920 | 853..937 | 400 | 98.8 | Plus |
| CG8474-PA | 1752 | Meics-RA | 795..839 | 811..855 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:43:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Meics-RA | 1940 | CG8474-RA | 74..993 | 17..937 | 4520 | 99.6 | Plus |
| Meics-RB | 1904 | CG8474-RB | 74..548 | 17..491 | 2375 | 100 | Plus |
| Meics-RB | 1904 | CG8474-RB | 549..957 | 528..937 | 1965 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13964119..13964629 | 527..17 | 2555 | 100 | Minus |
| 3L | 28110227 | 3L | 13963605..13964013 | 937..528 | 1925 | 98.5 | Minus |
Blast to na_te.dros performed 2015-02-13 02:43:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader2 | 5124 | invader2 INVADER2 5124bp | 4095..4178 | 568..653 | 118 | 62.8 | Plus |
BS01573.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:10:59 Download gff for
BS01573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-PA | 1..918 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:20:42 Download gff for
BS01573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8474-PA | 1..918 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:52:22 Download gff for
BS01573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 71..993 | 12..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:09:58 Download gff for
BS01573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 71..993 | 12..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:09:58 Download gff for
BS01573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13963605..13964013 | 528..937 | 99 | <- | Minus |
| 3L | 13964119..13964632 | 12..527 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:52:22 Download gff for
BS01573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13956705..13957113 | 528..937 | 99 | <- | Minus |
| arm_3L | 13957219..13957732 | 12..527 | 99 | | Minus |
BS01573.complete Sequence
1786 bp assembled on 2007-10-05
GenBank Submission: FJ634649
> BS01573.complete
GAAGTTATCAGTCGACATGGTTGGGAGATCATCGGGAAAAATGGAAAGAT
CAGTGGACGCCAGCATGGGAAAGAACTGCCGAGCCTGCGCCGAACACTCA
TCCATACTGGTGGACCTTTTCTCCAAGGAGATCTCTGATCCCCCCATTTG
GGAAATGTTGAACTCAATTCTGCCGGAGATCTGTCGCGTGAAACGGGATG
AAATGCCACAAAAGATCTGTCCTACCTGCCTGGTGGCCGCTCAAAATGCC
TTTCACTTCCGTCACAAGTGTGAGCAGAGTTTTCAGTTCTTTTCCCAGCT
CCTCCAGCTCGATAAATCAAACTCAAATCTGAGTAGATCCCATTGCAGAA
GAGGTACTATGAACCCATTAATACCCTTCGAGATAGTTGGTTGCGAGGAT
CCATTGGACACAAATGTAACCAAATTGGACGCTAATCGGCCTGATGTAAA
AACTGATATCGATGAGCCAACCGATGGAAAGGCAACTAATGGTCAGGAGA
GTGAACCATTGCAAGAAGTTTTTGAAATAACAATGAACGATATTAAAACG
GAAGATGAAGTATCCATTCAGGAGACATTTGAAGATGCCTTTGATGAAGA
AAATGATAATAACAATACTGATAGCGAAAGGGAGGATTCAGACCAATGGA
CAGTGGGCTCGACTGAAGACCAAGATGAACCCTGGATTCCCGGCGGCGGA
GGGCGCCAAACGGTTGGCGGCAATAATCAATCGCTTCTGTGCACAGAGTG
TGGAGTGAGTTACTCGACTCAAAAGGCGTTGGCAAGGCACGTTGCCAAGC
ACAAGGAGCAAGGTGATACACAAAAGCCGCACCTCTGCGATTTCTGCGGT
CGGGGATTTCGTACCAATGCCCAGCTAACGACCCATAGACGCCGTCATAC
TGGAGAGCGTCCTTTTAAATGCCCCCTCTGCCCGAAAGCTTATACGCACG
GTCCGACTCTGAAGTCGCATATGCACACCCACGACGAGGAAAAGGGTCAC
AAATGTCCACAGTGCGACAAAACCTTTTACACGAGAGGCAATCTTAGGGC
CCATATACAGAGGCACACTGGCGAACGACCCTATAAGTGTCCCGACTGCC
CACAAACCTTTGCCAAAAACTCTGGCCTTAAGTTGCATAGCCGTCTGCAC
AAGGAAGAGCGACCCTTTAAATGTGAGCTCTGCGGCAAGGGATTCGTACA
GAACCAGCATTTGATTACCCATTTGCGGGTCCACAACGGGGATCGCCAGT
TCAAGTGCCCCGACTGCGACAAGTCGTTCTTCGAGAAATCGAACATGATG
AAACATCAGCGAACCCATTCGGGTATAAAGCCATTTAAATGTGAGGAGTG
CGGCCAAGCCTTTTCCCACAACCATCACCTTAAGAGTCATCTACGCATCC
ATACAGGCGAAAAGCCCTACAAGTGCGACCAGTGCGGCAAGGGTTTCAGT
GCGAATCAGTCACTGATGAAGCATACCCTTTGGCACGTGGACAATAATGA
TCGGCCATTTAAATGTTCTCAGTGTCCCAAAGCCTATGACACTCAGCAGA
GCTTACGGGGTCACGAGAAGACGCACAAAAACCCGGATGAGCCAAAAACG
CTGCACCAATGCCCGCACTGCGACGTCAGGTTTGCTTTAAAAAAGACCCT
GGATAAGCATATCACAAGCCACAAGATTCGACCCCACCCATGCCCGCAAT
GTCCAGAGGGATTTTTCTCCCAGAAGAGCTTAAAAAAGCACTTGCGACTT
CACAACCTAAAGAAATAACGAAGCTTTCTAGACCAT
BS01573.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Meics-RA | 1752 | CG8474-PA | 1..1752 | 17..1768 | 8760 | 100 | Plus |
| Meics-RB | 1716 | CG8474-PB | 476..1716 | 528..1768 | 6205 | 100 | Plus |
| Meics-RB | 1716 | CG8474-PB | 1..475 | 17..491 | 2375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Meics-RA | 1940 | CG8474-RA | 74..1825 | 17..1768 | 8760 | 100 | Plus |
| Meics-RB | 1904 | CG8474-RB | 549..1789 | 528..1768 | 6205 | 100 | Plus |
| Meics-RB | 1904 | CG8474-RB | 74..548 | 17..491 | 2375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:00:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13962773..13964013 | 1768..528 | 6205 | 100 | Minus |
| 3L | 28110227 | 3L | 13964119..13964629 | 527..17 | 2555 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:00:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R2-element | 3607 | R2-element DMRER2DM 3607bp Derived from X51967 (g8432) (Rel. 24, Last updated, Version 1). | 2978..3029 | 1445..1496 | 116 | 69.2 | Plus |
BS01573.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:04 Download gff for
BS01573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 1..1752 | 17..1768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:50:36 Download gff for
BS01573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 62..1825 | 12..1776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:41 Download gff for
BS01573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 74..1815 | 17..1758 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:04 Download gff for
BS01573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 62..1825 | 12..1776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:46 Download gff for
BS01573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Meics-RA | 74..1815 | 17..1758 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:46 Download gff for
BS01573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13962783..13964013 | 528..1758 | 100 | <- | Minus |
| 3L | 13964119..13964629 | 17..527 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:41 Download gff for
BS01573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13955883..13957113 | 528..1758 | 100 | <- | Minus |
| arm_3L | 13957219..13957729 | 17..527 | 100 | | Minus |
BS01573.pep Sequence
Translation from 16 to 1767
> BS01573.pep
MVGRSSGKMERSVDASMGKNCRACAEHSSILVDLFSKEISDPPIWEMLNS
ILPEICRVKRDEMPQKICPTCLVAAQNAFHFRHKCEQSFQFFSQLLQLDK
SNSNLSRSHCRRGTMNPLIPFEIVGCEDPLDTNVTKLDANRPDVKTDIDE
PTDGKATNGQESEPLQEVFEITMNDIKTEDEVSIQETFEDAFDEENDNNN
TDSEREDSDQWTVGSTEDQDEPWIPGGGGRQTVGGNNQSLLCTECGVSYS
TQKALARHVAKHKEQGDTQKPHLCDFCGRGFRTNAQLTTHRRRHTGERPF
KCPLCPKAYTHGPTLKSHMHTHDEEKGHKCPQCDKTFYTRGNLRAHIQRH
TGERPYKCPDCPQTFAKNSGLKLHSRLHKEERPFKCELCGKGFVQNQHLI
THLRVHNGDRQFKCPDCDKSFFEKSNMMKHQRTHSGIKPFKCEECGQAFS
HNHHLKSHLRIHTGEKPYKCDQCGKGFSANQSLMKHTLWHVDNNDRPFKC
SQCPKAYDTQQSLRGHEKTHKNPDEPKTLHQCPHCDVRFALKKTLDKHIT
SHKIRPHPCPQCPEGFFSQKSLKKHLRLHNLKK*
BS01573.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:19:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Meics-PA | 583 | CG8474-PA | 1..583 | 1..583 | 3258 | 100 | Plus |
| Meics-PB | 571 | CG8474-PB | 1..571 | 1..583 | 3173 | 97.8 | Plus |
| crol-PC | 756 | CG14938-PC | 166..519 | 228..580 | 661 | 34 | Plus |
| crol-PG | 878 | CG14938-PG | 268..641 | 229..580 | 658 | 32.4 | Plus |
| CG5245-PA | 501 | CG5245-PA | 139..492 | 242..577 | 639 | 33.8 | Plus |
| CG5245-PA | 501 | CG5245-PA | 112..470 | 242..583 | 631 | 33.8 | Plus |
| CG5245-PA | 501 | CG5245-PA | 84..438 | 242..579 | 620 | 33.7 | Plus |
| CG5245-PA | 501 | CG5245-PA | 76..380 | 263..581 | 606 | 39.1 | Plus |
| CG5245-PA | 501 | CG5245-PA | 83..330 | 329..583 | 551 | 41 | Plus |
| CG5245-PA | 501 | CG5245-PA | 59..270 | 355..579 | 421 | 36.9 | Plus |
| crol-PC | 756 | CG14938-PC | 325..527 | 242..415 | 296 | 31.4 | Plus |
| CG5245-PA | 501 | CG5245-PA | 390..493 | 242..349 | 184 | 30.6 | Plus |
