Clone Sequence Records
BS01577.3prime Sequence
906 bp (802 high quality bases) assembled on 2005-11-29
> BS01577.3prime
ATGGTCTAGAAAGCTTCGTTACCGAAATCCGCCGGTTAATGTGCGATCCG
TGGACATGGTGGAGATCGTTTGTGCCTGTTGCTGCTGCGCCGACTGCTGC
TGCTGCGCCTGCGTCGCCGCCGCCTGGGCACCAGTCATGGTCGAGTTGAT
AAAGATCGGCGTGCCACTGGCCACCGCACTGGCGTTGCTCTGCTGCGTGA
GATTGGCGTGCTGCTGCTGTTGCTGCTGCTGCTGATGGGCCACTGTGGGT
GCTCCGCCCAGCTGGAGCAGTTGCTGTGTCGTCAGCAGTTGGGTTGGTAT
GATGACCTGTTGTTGCTGCTGCTGCTGTTGCTGCTGCTGTTGTTGCTGCT
GCTGCTGCTGTTGCATTTGTAGTCGCTGCAGGAGATTCAAATGACTGGCA
TTGATGGCGATCGGCACATTAGTCAGCTCCCCCGTGGGCGTAACCACTTG
CTGCAGCAGCTGAATCTGCTGCTGATGTTGCTGGTGCTGCTGTTGCTGCT
GGGCGAGATTCTGGAGCAGCGCCGTCTGTTGCTGGGCAGTCGTTTGCGGC
GCTGGCGTTGCGGTCAGCTGACCATTGGGACCGGCGGTCAGTATCAACTG
CTGGGTGGGTTGTTGGGTTGACAAAATGTTGATGGGTAGATGATTCTGCG
CGGGCTGCGGCTGCTGCACGAGCTGCGCCGCCTGCTGACTCGGCAGTGCG
ATAAAGTATTGCAACTGTTGGCCACCAGCGCCCTGCTGAAATATCTGAAC
CTGCTGTGGATGTGCCTGGTGATGTTGCTGCTGCTGTTGTTGCTGCTGCT
GCTGGGGCGCGTGCTGTTGCTGCTGTTTGTGTTGCTGCTGCAGTTGCGCT
GAGAAGATGTCCGAGTTGACAGTGCTGAAGCCGAGCACCTCGGCGGCATT
GGTTGC
BS01577.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3075-PA | 1806 | CG3075-RA | 919..1806 | 906..19 | 4290 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:11:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nf-YC-RA | 2522 | CG3075-RA | 1112..1999 | 906..19 | 4350 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6819156..6819650 | 412..906 | 2385 | 98.8 | Plus |
| X | 23542271 | X | 6818701..6819098 | 19..416 | 1975 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:11:27 has no hits.
BS01577.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:02 Download gff for
BS01577.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3075-PA | 919..1806 | 19..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:20:46 Download gff for
BS01577.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3075-PA | 919..1806 | 19..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:16:41 Download gff for
BS01577.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YC-RA | 1112..2004 | 12..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:55:49 Download gff for
BS01577.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YC-RA | 1112..2004 | 12..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:55:49 Download gff for
BS01577.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6818696..6819093 | 12..411 | 99 | <- | Plus |
| X | 6819156..6819650 | 412..906 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:16:41 Download gff for
BS01577.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6712729..6713126 | 12..411 | 99 | <- | Plus |
| arm_X | 6713189..6713683 | 412..906 | 98 | | Plus |
BS01577.5prime Sequence
826 bp (710 high quality bases) assembled on 2005-11-29
> BS01577.5prime
GAAGTTATCAGTCGACATGTACGCCACCAACAATGGCGGCACGAACAAGG
CGCCAAACAGCAATGCCACCTCCATGTTCGACAACACCATCACAGTGACG
CCCATAAAGATGGAACTGGGCCAGGCGTATGCCAAATCGCAAAATTCAGC
GGCTATGCAGCGAAGAACACCGAATGCAGTGGTGGTCACCTCCTCCTCCA
CCGTCTCCTCCGCCCAGCAGCAGCAGCAACAGCAGGGCCAGCAGCAACAG
CAGACGGTTCCCATGGCCAGTTTGGTGTCCAACGCCTGTACGCTGGTTAA
TCCCAGCATGAGTGTGACGGTGGCCACCACCGTTGCGAGCGGCGCCAAGG
AGAAGACCACGAAGGCCACACGAACTCAGGTGGCACGCAAACCGCCGCCC
ACCATCGACAACTTCTGGCCAAATATCGTGAGCGAGGTGCACAGCATCGG
CCAGGTGGATGCCAAGCACCAGGTGCTGCCGCTGGCGCGCATCAAGAAAA
TCATGAAGCTGGACGAGAACGCCAAGATGATTGCCGGCGAGGCGCCGCTA
CTGTTTGCCAAAGCCTGCGAGTACTTCATTCAGGAGCTGACTATGCACGC
TTGGGTGCACACCGAGGAGAGCCGGCGGCGTACGCTCCAGCGTTCGGACA
TTGCCCAGGCCATAGCCAACTACGACCAGTTCGACTTCCTCATCGACATT
GTGCCGCGCGAAGAGATCAAACCGTCGTCGGCGCAAAAGACCAAGGATGG
CAGTACATCCAGTTCGAGCGGAATGGCGGGCGCAGCCAGCAGTGCCGCCT
CCACCTCCACACAGCCACCTCCAATG
BS01577.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3075-PA | 1806 | CG3075-RA | 1..793 | 17..809 | 3965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:34:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nf-YC-RA | 2522 | CG3075-RA | 193..1004 | 16..826 | 4035 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:34:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6819758..6820528 | 826..57 | 3805 | 99.9 | Minus |
| X | 23542271 | X | 6820683..6820727 | 60..16 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:34:16 has no hits.
BS01577.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:03 Download gff for
BS01577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3075-PA | 1..811 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:20:48 Download gff for
BS01577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3075-PA | 1..811 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:21:37 Download gff for
BS01577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YC-RA | 193..1004 | 16..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:23:01 Download gff for
BS01577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YC-RA | 193..1004 | 16..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:23:01 Download gff for
BS01577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6819758..6820524 | 61..826 | 99 | <- | Minus |
| X | 6820683..6820727 | 16..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:21:37 Download gff for
BS01577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6713791..6714557 | 61..826 | 99 | <- | Minus |
| arm_X | 6714716..6714760 | 16..60 | 100 | | Minus |
BS01577.complete Sequence
1840 bp assembled on 2009-02-12
GenBank Submission: MN238603
> BS01577.complete
GAAGTTATCAGTCGACATGTACGCCACCAACAATGGCGGCACGAACAAGG
CGCCAAACAGCAATGCCACCTCCATGTTCGACAACACCATCACAGTGACG
CCCATAAAGATGGAACTGGGCCAGGCGTATGCCAAATCGCAAAATTCAGC
GGCTATGCAGCGAAGAACACCGAATGCAGTGGTGGTCACCTCCTCCTCCA
CCGTCTCCTCCGCCCAGCAGCAGCAGCAACAGCAGGGCCAGCAGCAACAG
CAGACGGTTCCCATGGCCAGTTTGGTGTCCAACGCCTGTACGCTGGTTAA
TCCCAGCATGAGTGTGACGGTGGCCACCACCGTTGCGAGCGGCGCCAAGG
AGAAGACCACGAAGGCCACACGAACTCAGGTGGCACGCAAACCGCCGCCC
ACCATCGACAACTTCTGGCCAAATATCGTGAGCGAGGTGCACAGCATCGG
CCAGGTGGATGCCAAGCACCAGGTGCTGCCGCTGGCGCGCATCAAGAAAA
TCATGAAGCTGGACGAGAACGCCAAGATGATTGCCGGCGAGGCGCCGCTA
CTGTTTGCCAAAGCCTGCGAGTACTTCATTCAGGAGCTGACTATGCACGC
TTGGGTGCACACCGAGGAGAGCCGGCGGCGTACGCTCCAGCGTTCGGACA
TTGCCCAGGCCATAGCCAACTACGACCAGTTCGACTTCCTCATCGACATT
GTGCCGCGCGAAGAGATCAAACCGTCGTCGGCGCAAAAGACCAAGGATGG
CAGTACATCCAGTTCGAGCGGAATGGCGGGCGCAGCCAGCAGTGCCGCCT
CCACCTCCAACACAGCCACCTCCAATGCGGCCGCCTCCGTGGCGGGCAAT
GCTACCGCCACGGGCAACTTTGTAGCCAGTGGTTCCACCGTACCTGCGAC
CACCGCTGGTGGCCTCAAGCTGGACACCACGGGTGCAACCAATGCCGCCG
AGGTGCTCGGCTTCAGCACTGTCAACTCGGACATCTTCTCAGCGCAACTG
CAGCAGCAACAACAACAGCAGCAACAGCACGCCGCCCAGCAGCAGCAGCA
ACAACAGCAGCAGCAACATCACCAGGCACATCCACAGCAGGTTCAGATTA
TTCAGCAGGGCGCTGGTGGCCAACAGTTGCAATACTTTATCGCACTGCCG
AGTCAGCAGGCGGCGCAGCTCGTGCAGCAGCCGCAGCCCGCGCAGAATCA
TCTACCCATCAACATTTTGTCAACCCAACAACCCACCCAGCAGTTGATAC
TGACCGCCGGTCCCAATGGTCAGCTGACCGCAACGCCAGCGCCGCAAACG
ACTGCCCAGCAACAGACGGCGCTGCTCCAGAATCTCGCCCAGCAGCAACA
GCAGCACCAGCAACATCAGCAGCAGATTCAGCTGCTGCAGCAAGTGGTTA
CGCCCACGGGGGAGCTGACTAATGTGCCGATCGCCATCAATGCCAGTCAT
TTGAATCTCCTGCAGCGACTACAAATGCAACAGCAGCAGCAGCAGCAACA
ACAGCAGCAGCAACAGCAGCAGCAGCAACAACAGGTCATCATACCAACCC
AACTGCTGACGACACAGCAACTGCTCCAGCTGGGCGGAGCACCCACAGTG
GCCCATCAGCAGCAGCAGCAACAGCAGCAGCACGCCAATCTCACGCAGCA
GAGCAACGCCAGTGCGGTGGCCAGTGGCACGCCGATCTTTATCAACTCGA
CCATGACTGGTGCCCAGGCGGCGGCGACGCAGGCGCAGCAGCAGCAGTCG
GCGCAGCAGCAACAGGCACAAACGATCTCCACCATGTCCACGGATCGCAC
ATTAACCGGCGGATTTCGGTAACGAAGCTTTCTAGACCAT
BS01577.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nf-YC-RA | 1806 | CG3075-PA | 1..1806 | 17..1822 | 9030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nf-YC-RA | 2522 | CG3075-RA | 193..1999 | 16..1822 | 9035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6819156..6820528 | 1429..57 | 6865 | 100 | Minus |
| X | 23542271 | X | 6818701..6819098 | 1822..1425 | 1975 | 99.7 | Minus |
| X | 23542271 | X | 6820683..6820727 | 60..16 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:40:33 has no hits.
BS01577.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:32 Download gff for
BS01577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3075-RA | 190..1995 | 17..1824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:10 Download gff for
BS01577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YC-RA | 194..1999 | 17..1824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:32 Download gff for
BS01577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YC-RA | 194..1999 | 17..1824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:32 Download gff for
BS01577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6818698..6819093 | 1430..1824 | 99 | <- | Minus |
| X | 6819156..6820524 | 61..1429 | 100 | <- | Minus |
| X | 6820683..6820726 | 17..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:10 Download gff for
BS01577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6712731..6713126 | 1430..1824 | 99 | <- | Minus |
| arm_X | 6713189..6714557 | 61..1429 | 100 | <- | Minus |
| arm_X | 6714716..6714759 | 17..60 | 100 | | Minus |
BS01577.pep Sequence
Translation from 16 to 1821
> BS01577.pep
MYATNNGGTNKAPNSNATSMFDNTITVTPIKMELGQAYAKSQNSAAMQRR
TPNAVVVTSSSTVSSAQQQQQQQGQQQQQTVPMASLVSNACTLVNPSMSV
TVATTVASGAKEKTTKATRTQVARKPPPTIDNFWPNIVSEVHSIGQVDAK
HQVLPLARIKKIMKLDENAKMIAGEAPLLFAKACEYFIQELTMHAWVHTE
ESRRRTLQRSDIAQAIANYDQFDFLIDIVPREEIKPSSAQKTKDGSTSSS
SGMAGAASSAASTSNTATSNAAASVAGNATATGNFVASGSTVPATTAGGL
KLDTTGATNAAEVLGFSTVNSDIFSAQLQQQQQQQQQHAAQQQQQQQQQQ
HHQAHPQQVQIIQQGAGGQQLQYFIALPSQQAAQLVQQPQPAQNHLPINI
LSTQQPTQQLILTAGPNGQLTATPAPQTTAQQQTALLQNLAQQQQQHQQH
QQQIQLLQQVVTPTGELTNVPIAINASHLNLLQRLQMQQQQQQQQQQQQQ
QQQQQQVIIPTQLLTTQQLLQLGGAPTVAHQQQQQQQQHANLTQQSNASA
VASGTPIFINSTMTGAQAAATQAQQQQSAQQQQAQTISTMSTDRTLTGGF
R*
BS01577.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nf-YC-PA | 601 | CG3075-PA | 1..601 | 1..601 | 2994 | 100 | Plus |
| ptip-PA | 2294 | CG32133-PA | 950..1224 | 327..589 | 293 | 35.4 | Plus |
| Smr-PG | 3607 | CG4013-PG | 2..354 | 244..585 | 286 | 30.6 | Plus |
| ptip-PA | 2294 | CG32133-PA | 777..1034 | 302..587 | 284 | 36.4 | Plus |
| ptip-PA | 2294 | CG32133-PA | 710..963 | 327..585 | 282 | 36.5 | Plus |
| Smr-PG | 3607 | CG4013-PG | 28..664 | 3..592 | 280 | 24.9 | Plus |
| Spt20-PC | 1646 | CG17689-PC | 812..1122 | 305..599 | 279 | 34.5 | Plus |
| Spt20-PD | 1873 | CG17689-PD | 812..1122 | 305..599 | 279 | 34.5 | Plus |
| ptip-PA | 2294 | CG32133-PA | 1012..1251 | 318..586 | 266 | 36.1 | Plus |
| ptip-PA | 2294 | CG32133-PA | 936..1204 | 328..583 | 265 | 34.4 | Plus |
| ptip-PA | 2294 | CG32133-PA | 229..485 | 327..583 | 263 | 35.6 | Plus |
| ptip-PA | 2294 | CG32133-PA | 874..1186 | 327..598 | 256 | 33.4 | Plus |
| ptip-PA | 2294 | CG32133-PA | 563..848 | 327..591 | 246 | 32.9 | Plus |
| ptip-PA | 2294 | CG32133-PA | 262..578 | 300..587 | 238 | 31.8 | Plus |
| ptip-PA | 2294 | CG32133-PA | 659..900 | 332..589 | 230 | 33.2 | Plus |
| ptip-PA | 2294 | CG32133-PA | 1139..1366 | 319..537 | 212 | 35.8 | Plus |
| ptip-PA | 2294 | CG32133-PA | 362..673 | 323..585 | 206 | 31.9 | Plus |
| ptip-PA | 2294 | CG32133-PA | 429..741 | 327..591 | 200 | 29.2 | Plus |
| ptip-PA | 2294 | CG32133-PA | 465..770 | 317..584 | 200 | 30.5 | Plus |
| ptip-PA | 2294 | CG32133-PA | 1481..1727 | 327..583 | 200 | 34.3 | Plus |
| ptip-PA | 2294 | CG32133-PA | 1085..1349 | 312..583 | 192 | 31.6 | Plus |
| Smr-PG | 3607 | CG4013-PG | 197..668 | 36..517 | 186 | 21.6 | Plus |
| Spt20-PC | 1646 | CG17689-PC | 781..989 | 371..587 | 186 | 30.4 | Plus |
| ptip-PA | 2294 | CG32133-PA | 189..307 | 436..587 | 180 | 37 | Plus |
