Clone Sequence Records
BS01581.3prime Sequence
867 bp (805 high quality bases) assembled on 2005-11-29
> BS01581.3prime
ATGGTCTAGAAAGCTTCGTCAACTTTGCTTGCTCGTGGGTGCTGTCAGTG
TCATGGCTGTCGTGGGTGTCGAAGGTGCTCCTGTGGCCAGCTCATTCCCG
CCCAGATCGCTGCCCTGCGACTTCAACTGCAGCTCCGGCGGCTGTGGCTG
CTGCTGCTGCGGCGGCTTCTCGCTGATCACGGACGTGGAGTGCTGCGTCA
GGATGTCCGCCGGAATGAGGCCCTCCTTCACGCGCTTCTTCTGCTTCATG
CGGCGGTTCTGGAACCAGATTTTGACCTGCGTTTCATTAAGCTGCAACGT
ATTGGCGATTTCAATGCGGCGCGCCCGCGTCAAGTAGCGATTGAAGTGGA
ACTCTTTTTCCAGCTCGGTCAGCTGCTTGTTGGTGAAGTTCGTCCGGCCG
GAGTTGTTGGTGTTGCTGGAGAGGCTGCAGCTGCTCAGTCCGGATCCGCT
GCCCAGACCCACGCCCATGCCGTTGGGATGGGCACTTCCCGCCGCCGCCG
CACTGTTCGCCATTATCAGGGAGTTCTGCACGGAAAGGACGCCTCCGATC
CCGGGGGATCCGTTGCCCCCAACGCCCACGGGACCGTTCCCGACGCCGCT
GCCCCCGCCTCCTCCACCGCGGCACATGTCCAGCTGTCCATTCATCTGGT
AGTCGTGCATGCTGGCGATTCCACTGGCAGGTAGTTTCGGTGCTTGAGGC
TTTGGAACATTCCTCTTGAGTTGCATCCACTTGTAGGTGGGGATGCTGCT
GGGATGATTTGGCGACTTTGATTGCGTGCTGGCAGGATGTGCTCCATTCG
AGGCGGAGGTGGAGGAGGAAGTGGAGCTACCCGGGGAGATCACTCCCCCG
CGCTGCTGGCGATTCAT
BS01581.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1264-PA | 1890 | lab-RA | 1042..1890 | 867..19 | 4220 | 99.8 | Minus |
| CG10604-PA | 864 | bsh-RA | 534..560 | 268..242 | 135 | 100 | Minus |
| CG10604-PB | 1290 | bsh-RB | 960..986 | 268..242 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:07:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lab-RA | 2775 | CG1264-RA | 1286..2134 | 867..19 | 4230 | 99.9 | Minus |
| lab-RB | 1586 | CG1264-RB | 272..945 | 692..19 | 3370 | 100 | Minus |
| ftz-RA | 1774 | CG2047-RA | 872..1003 | 366..235 | 210 | 79.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6662569..6662988 | 275..694 | 2100 | 100 | Plus |
| 3R | 32079331 | 3R | 6662068..6662329 | 19..280 | 1310 | 100 | Plus |
| 3R | 32079331 | 3R | 6677131..6677305 | 693..867 | 860 | 99.4 | Plus |
| 3R | 32079331 | 3R | 6865342..6865473 | 366..235 | 210 | 77.3 | Minus |
Blast to na_te.dros performed 2015-02-12 05:07:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2384 | 177..127 | 117 | 72.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6837..6927 | 435..347 | 117 | 60.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2633..2674 | 160..119 | 111 | 73.8 | Minus |
BS01581.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:06 Download gff for
BS01581.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1264-PA | 1042..1890 | 19..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:20:52 Download gff for
BS01581.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1264-PA | 1042..1890 | 19..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:13:10 Download gff for
BS01581.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lab-RA | 1286..2144 | 8..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:08 Download gff for
BS01581.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lab-RA | 1286..2144 | 8..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:08 Download gff for
BS01581.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6662064..6662325 | 14..276 | 98 | <- | Plus |
| 3R | 6662571..6662986 | 277..692 | 100 | <- | Plus |
| 3R | 6677131..6677305 | 693..867 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:13:10 Download gff for
BS01581.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2487786..2488047 | 14..276 | 98 | <- | Plus |
| arm_3R | 2488293..2488708 | 277..692 | 100 | <- | Plus |
| arm_3R | 2502853..2503027 | 693..867 | 99 | | Plus |
BS01581.5prime Sequence
886 bp (787 high quality bases) assembled on 2005-11-29
> BS01581.5prime
GAAGTTATCAGTCGACATGATGGACGTAAGCAGCATGTACGGCAACCACC
CGCACCACCACCATCCACATGCCAATGCCTACGACGGCTACAGCACCACC
ACCGCGTCGGCGGCCAACGCCAGCAGCTACTTTGCTCCGCAGCAACACCA
GCCCCACCTGCAGCTGCAGCAGCAGCAACAGCATCAGCATTTGCAGCAGC
CCCAGCAGCACCTCACCTACAATGGCTACGAGAGCAGCTCCCCAGGCAAC
TACTATCCGCAGCAGCAGGCGCAGCTGACACCACCGCCCACCAGCAGCCA
CCAGGTGGTGCAGCAGCACCAGCAACAGCAGCAGGCGCAGCAGCAACAGC
TCTATCCGCATTCGCATCTCTTTAGTCCCAGTGCGGCGGAGTATGGCATC
ACCACGAGTACGACCACGGGAAATCCGGGCACGCCGCTCCATCCTAGTAG
CCACTCTCCTGCGGACTCCTACTACGAAAGTGACTCGGTGCACTCGTACT
ACGCTACCGCCGCAGTGGCCACAGTTGCTCCACCCAGCAATAGCTCACCT
ATTACCGCCGCCAATGCAAGTGCCACCAGCAACACACAACAACAGCAGCA
ACAGGCAGCAATCATCAGCTCCGAGAACGGGATGATGTACACCAACCTGG
ACTGCATGTATCCCACGGCCCAGGCTCAGGCTCCGGTTCACGGATATGCC
GGCCAGATCGAGGAGAAATACGCCGCCGTCCTGCACGCCAGCTATGCACC
CGGAATGGTGCTGGAGGATCAGGATCCAATGATGCAGCAGGCCACGCAGT
CGCAGATGTGGCACCACCAGCAACATCTGGCAGGCAGCTATGCCCTAGAT
GCCATGGACTCGCTAGGAATGCACGCCCACATGCAT
BS01581.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:20:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1264-PA | 1890 | lab-RA | 1..870 | 17..886 | 4325 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:19:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lab-RA | 2775 | CG1264-RA | 245..1114 | 17..886 | 4335 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:19:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6677477..6678346 | 886..17 | 4335 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:19:31 has no hits.
BS01581.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:07 Download gff for
BS01581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1264-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:20:53 Download gff for
BS01581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1264-PA | 1..870 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:09:53 Download gff for
BS01581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lab-RA | 245..1114 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:51:01 Download gff for
BS01581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lab-RA | 245..1114 | 17..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:51:01 Download gff for
BS01581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6677477..6678346 | 17..886 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:09:53 Download gff for
BS01581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2503199..2504068 | 17..886 | 99 | | Minus |
BS01581.complete Sequence
1924 bp (1924 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ638766
> BS01581.complete
GAAGTTATCAGTCGACATGATGGACGTAAGCAGCATGTACGGCAACCACC
CGCACCACCACCATCCACATGCCAATGCCTACGACGGCTACAGCACCACC
ACCGCGTCGGCGGCCAACGCCAGCAGCTACTTTGCTCCGCAGCAACACCA
GCCCCACCTGCAGCTGCAGCAGCAGCAACAGCATCAGCATTTGCAGCAGC
CCCAGCAGCACCTCACCTACAATGGCTACGAGAGCAGCTCCCCAGGCAAC
TACTATCCGCAGCAGCAGGCGCAGCTGACACCACCGCCCACCAGCAGCCA
CCAGGTGGTGCAGCAGCACCAGCAACAGCAGCAGGCGCAGCAGCAACAGC
TCTATCCGCATTCGCATCTCTTTAGTCCCAGTGCGGCGGAGTATGGCATC
ACCACGAGTACGACCACGGGAAATCCGGGCACGCCGCTCCATCCTAGTAG
CCACTCTCCTGCGGACTCCTACTACGAAAGTGACTCGGTGCACTCGTACT
ACGCTACCGCCGCAGTGGCCACAGTTGCTCCACCCAGCAATAGCTCACCT
ATTACCGCCGCCAATGCAAGTGCCACCAGCAACACACAACAACAGCAGCA
ACAGGCAGCAATCATCAGCTCCGAGAACGGGATGATGTACACCAACCTGG
ACTGCATGTATCCCACGGCCCAGGCTCAGGCTCCGGTTCACGGATATGCC
GGCCAGATCGAGGAGAAATACGCCGCCGTCCTGCACGCCAGCTATGCACC
CGGAATGGTGCTGGAGGATCAGGATCCAATGATGCAGCAGGCCACGCAGT
CGCAGATGTGGCACCACCAGCAACATCTGGCAGGCAGCTATGCCCTAGAT
GCCATGGACTCGCTAGGAATGCACGCCCACATGCATCACGGCCTGCCCCA
CGGACACCTGGGCAACTTGGCCAACAATCCGCATCAGCAACAGCCACAAG
TCCAGCAGCAACAGCAGCAGCCGCACCAGCAACCGCAACATCCGCAGAAC
CAATCCCCAGCGGCACACCAGCAGCACCACCAGAACTCCGTGTCGCCCAA
CGGTGGAATGAATCGCCAGCAGCGCGGGGGAGTGATCTCCCCGGGTAGCT
CCACTTCCTCCTCCACCTCCGCCTCGAATGGAGCACATCCTGCCAGCACG
CAATCAAAGTCGCCAAATCATTCCAGCAGCATCCCCACCTACAAGTGGAT
GCAACTCAAGAGGAATGTTCCAAAGCCTCAAGCACCGAAACTACCTGCCA
GTGGAATCGCCAGCATGCACGACTACCAGATGAATGGACAGCTGGACATG
TGCCGCGGTGGAGGAGGCGGGGGCAGCGGCGTCGGGAACGGTCCCGTGGG
CGTTGGGGGCAACGGATCCCCCGGGATCGGAGGCGTCCTTTCCGTGCAGA
ACTCCCTGATAATGGCGAACAGTGCGGCGGCGGCGGGAAGTGCCCATCCC
AACGGCATGGGCGTGGGTCTGGGCAGCGGATCCGGACTGAGCAGCTGCAG
CCTCTCCAGCAACACCAACAACTCCGGCCGGACGAACTTCACCAACAAGC
AGCTGACCGAGCTGGAAAAAGAGTTCCACTTCAATCGCTACTTGACGCGG
GCGCGCCGCATTGAAATCGCCAATACGTTGCAGCTTAATGAAACGCAGGT
CAAAATCTGGTTCCAGAACCGCCGCATGAAGCAGAAGAAGCGCGTGAAGG
AGGGCCTCATTCCGGCGGACATCCTGACGCAGCACTCCACGTCCGTGATC
AGCGAGAAGCCGCCGCAGCAGCAGCAGCCACAGCCGCCGGAGCTGCAGTT
GAAGTCGCAGGGCAGCGATCTGGGCGGGAATGAGCTGGCCACAGGAGCAC
CTTCGACACCCACGACAGCCATGACACTGACAGCACCCACGAGCAAGCAA
AGTTGACGAAGCTTTCTAGACCAT
BS01581.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:56:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lab-RA | 1890 | CG1264-PA | 1..1890 | 17..1906 | 9435 | 99.9 | Plus |
| lab-RB | 642 | CG1264-PB | 1..642 | 1265..1906 | 3210 | 100 | Plus |
| ftz-RA | 1233 | CG2047-PA | 802..933 | 1559..1690 | 210 | 77.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:56:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lab-RA | 2775 | CG1264-RA | 245..2134 | 17..1906 | 9435 | 99.9 | Plus |
| lab-RB | 1586 | CG1264-RB | 272..945 | 1233..1906 | 3370 | 100 | Plus |
| ftz-RA | 1774 | CG2047-RA | 872..1003 | 1559..1690 | 210 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:56:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6677131..6678346 | 1232..17 | 6065 | 99.9 | Minus |
| 3R | 32079331 | 3R | 6662569..6662988 | 1650..1231 | 2100 | 100 | Minus |
| 3R | 32079331 | 3R | 6662068..6662329 | 1906..1645 | 1310 | 100 | Minus |
| 3R | 32079331 | 3R | 6865342..6865473 | 1559..1690 | 210 | 77.3 | Plus |
Blast to na_te.dros performed 2014-11-28 07:56:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2417..2539 | 912..1029 | 197 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2384 | 1748..1798 | 117 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6837..6927 | 1490..1578 | 117 | 60.4 | Plus |
BS01581.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:58 Download gff for
BS01581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lab-RA | 1..1890 | 17..1906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:59 Download gff for
BS01581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lab-RA | 245..2136 | 17..1908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:58 Download gff for
BS01581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lab-RA | 245..2136 | 17..1908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:58 Download gff for
BS01581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lab-RA | 245..2144 | 17..1917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:07:31 Download gff for
BS01581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lab-RA | 245..2136 | 17..1908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:07:31 Download gff for
BS01581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6662066..6662325 | 1649..1908 | 99 | <- | Minus |
| 3R | 6662571..6662986 | 1233..1648 | 100 | <- | Minus |
| 3R | 6677131..6678346 | 17..1232 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:58 Download gff for
BS01581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2487788..2488047 | 1649..1908 | 99 | <- | Minus |
| arm_3R | 2488293..2488708 | 1233..1648 | 100 | <- | Minus |
| arm_3R | 2502853..2504068 | 17..1232 | 99 | | Minus |
BS01581.pep Sequence
Translation from 16 to 1905
> BS01581.pep
MMDVSSMYGNHPHHHHPHANAYDGYSTTTASAANASSYFAPQQHQPHLQL
QQQQQHQHLQQPQQHLTYNGYESSSPGNYYPQQQAQLTPPPTSSHQVVQQ
HQQQQQAQQQQLYPHSHLFSPSAAEYGITTSTTTGNPGTPLHPSSHSPAD
SYYESDSVHSYYATAAVATVAPPSNSSPITAANASATSNTQQQQQQAAII
SSENGMMYTNLDCMYPTAQAQAPVHGYAGQIEEKYAAVLHASYAPGMVLE
DQDPMMQQATQSQMWHHQQHLAGSYALDAMDSLGMHAHMHHGLPHGHLGN
LANNPHQQQPQVQQQQQQPHQQPQHPQNQSPAAHQQHHQNSVSPNGGMNR
QQRGGVISPGSSTSSSTSASNGAHPASTQSKSPNHSSSIPTYKWMQLKRN
VPKPQAPKLPASGIASMHDYQMNGQLDMCRGGGGGGSGVGNGPVGVGGNG
SPGIGGVLSVQNSLIMANSAAAAGSAHPNGMGVGLGSGSGLSSCSLSSNT
NNSGRTNFTNKQLTELEKEFHFNRYLTRARRIEIANTLQLNETQVKIWFQ
NRRMKQKKRVKEGLIPADILTQHSTSVISEKPPQQQQPQPPELQLKSQGS
DLGGNELATGAPSTPTTAMTLTAPTSKQS*
BS01581.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lab-PA | 629 | CG1264-PA | 1..629 | 1..629 | 3348 | 100 | Plus |
| lab-PB | 213 | CG1264-PB | 1..213 | 417..629 | 1103 | 100 | Plus |
| Scr-PB | 417 | CG1030-PB | 85..384 | 288..561 | 307 | 34 | Plus |
| Scr-PA | 417 | CG1030-PA | 85..384 | 288..561 | 307 | 34 | Plus |
| abd-A-PB | 590 | CG10325-PB | 9..458 | 112..561 | 262 | 24.8 | Plus |
