Clone Sequence Records
BS01583.3prime Sequence
926 bp (851 high quality bases) assembled on 2005-11-29
> BS01583.3prime
ATGGTCTAGAAAGCTTCGTCAGTGACAGCCAACGCAGTTCGGATTTCGCT
CCTCGAAATCACATATTCCGATAGCGAAACGAAAGGGTTTATGTTGAGGC
AAGTGCATGGGCTGCGTGGAGGGCATCGGTATTCGCGGAATATAGAACTC
ACGTTCTTCGTACGACTTGACTATTCGAGAATAGTCCGATGACCGTGGCA
CATGGCAGTTGACAATCGAGAGCGAACGATCAATGCTGATGAGGGGCTCG
TCGTTGGGACTGTGCCCCAGCTTTTTGCAATGGGCCAGCAGCTTAGCCTC
GCTAAGAAACTCCAATCGGCAGAAATTGCAGTGGTAATTGATCCCTTTCC
TGTGCAGCTGGAAATGCCGATCTAACTGGTGCTGCAACTCAAACTCTTCG
CGGCACTTATGGCAGATGTAGAGGCCGCGGTTCTGGAGATGCATATGGTA
GTCTAAAAAGACCTTGCTGGTGAACACATCGCCGCACTTATGACAGTAAA
ACCAGCTCATCTTCCAGTGCTCCATGTAGTCGTGCTTCATTAGAGCCACT
AGGGTGTCCGTCTGGTAGCCACAGTCAGGCGTGAAACAAGTGAATGATTT
CAGTCGCACCTGCGTCTTGAGCAGGTCCAGTAGGTAAAGATCATACTCCT
TGTCGGTGGTCATGTGCGTTTCCACCATTCCGTAGTCTCCGTACAAAAGG
GAGAGATTACCAGCGCTGTTGCTATTGCTGCGGCTGTGGTTAACAATCCA
GTCGCCAGTAAAGTTCATACGTCGCGCGTACATGGCATCCTCCTCGCCCT
CTTCTAGTTCCTCCCCACCGCTTTCTATCTCTTCATCTTCTTCGTCCTCT
TCCTCCCTCATCATGTCGTACCTATCCCAGGCTTCGGAGCATGCCCGTGA
GCGAGAGCGCATCGAGCATGCCCTTG
BS01583.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11906-PA | 1905 | CG11906-RA | 1068..1905 | 856..19 | 4165 | 99.8 | Minus |
CG11906-PA | 1905 | CG11906-RA | 998..1062 | 926..862 | 325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11906-RA | 2289 | CG11906-RA | 1177..2084 | 926..19 | 4480 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 14:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19281623..19282071 | 19..467 | 2215 | 99.6 | Plus |
2R | 25286936 | 2R | 19282369..19282653 | 642..926 | 1350 | 98.2 | Plus |
2R | 25286936 | 2R | 19282129..19282308 | 463..642 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 14:29:55 has no hits.
BS01583.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:10 Download gff for
BS01583.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11906-PA | 998..1905 | 19..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:20:58 Download gff for
BS01583.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11906-PA | 998..1905 | 19..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:10:50 Download gff for
BS01583.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11906-RA | 1177..2094 | 11..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:57:20 Download gff for
BS01583.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11906-RA | 1177..2094 | 11..926 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:57:20 Download gff for
BS01583.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19281613..19282067 | 11..463 | 98 | <- | Plus |
2R | 19282130..19282307 | 464..641 | 100 | <- | Plus |
2R | 19282369..19282653 | 642..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:10:50 Download gff for
BS01583.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15169118..15169572 | 11..463 | 98 | <- | Plus |
arm_2R | 15169635..15169812 | 464..641 | 100 | <- | Plus |
arm_2R | 15169874..15170158 | 642..926 | 99 | | Plus |
BS01583.5prime Sequence
906 bp (810 high quality bases) assembled on 2005-11-29
> BS01583.5prime
GAAGTTATCAGTCGACATGCAGGATGCCACGGCTCCGGATCCGGAACCCA
GCAGCACCAACGGCAATTGCTCCGTTGAACATGACAATCGGCAGGATCAG
GATGAGAACCACGTAGGCGCCGAGCGGGAAGCGGAGGCCAACGATGCCAA
CTGCACCGTTTGTGGTGCCGCCAAGGCATCGGCGCTTTTGGATCTGCGCT
CCAACCATGTAATGCAACGTCGCCTAAGTCGCGACTGGAAGATTCATGCA
GATGTAATCCGATCCACATTGAAGGCCATTTGCGTGGAGTGCGTGTGCAA
GCTGAACATGCACTCGGAGGTCACTCGATCCCTGATGCAGCGCATGCAAC
GGCTGCAGCGTTCCGGTGGTGAAACCACCAAGGTGACAACCACCACGACA
TCGCCCAGCCAGCACAGTCCACCCATTGCTGATGCAGAGGTGTCGACCAC
CTTGATTGAGAGTCAGGAGGAGGTGGCCCACAGCGGGCAGAGCGTTCGCT
CGCGTTCTTCCTGCTCCGTGCTGGAAGTATACCTCGCTCAACAACCATAT
TCTCCATCGGCCAAGGAAACGGAAGAGAAGCATGCGGAGGGCTGGAAATG
GCGAACACGGCTGGAGTGTCACGAATGTGGTCGGGCCTATTTTCGACGGG
ATTACTACGCCCAGCACTTGAGGCGCTGCTCCAAAACGCGCAGGAAGCAG
CCACGTCCATCGCGCGTCAAATGCCGGGTACTAAATGAGGCGAGCTATGA
TGAAGAGGCGCCATCCAGAGCCATCCGATCATCGCGCATATACTACTGCC
GGCATTGCGACGCAGAGTTTGAGACCTTAATCAGTAAGCGACAGCATGAG
CGAATGAAGCATCAGCAGCGATATCCGTGGTGATTTGTGCGAAGCCCCAG
TGGGAC
BS01583.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11906-PA | 1905 | CG11906-RA | 1..863 | 17..879 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:32:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11906-RA | 2289 | CG11906-RA | 180..1067 | 17..906 | 4385 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19282831..19283483 | 897..244 | 3205 | 99.7 | Minus |
2R | 25286936 | 2R | 19283551..19283782 | 248..17 | 1160 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:32:23 has no hits.
BS01583.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:11 Download gff for
BS01583.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11906-PA | 1..888 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:20:59 Download gff for
BS01583.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11906-PA | 1..888 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:08:31 Download gff for
BS01583.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11906-RA | 173..1067 | 9..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:43 Download gff for
BS01583.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11906-RA | 173..1067 | 9..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:43 Download gff for
BS01583.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19282823..19283479 | 248..906 | 99 | <- | Minus |
2R | 19283552..19283786 | 9..247 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:08:31 Download gff for
BS01583.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15170328..15170984 | 248..906 | 99 | <- | Minus |
arm_2R | 15171057..15171291 | 9..247 | 98 | | Minus |
BS01583.complete Sequence
1939 bp assembled on 2009-02-12
> BS01583.complete
GAAGTTATCAGTCGACATGCAGGATGCCACGGCTCCGGATCCGGAACCCA
GCAGCACCAACGGCAATTGCTCCGTTGAACATGACAATCGGCAGGATCAG
GATGAGAACCACGTAGGCGCCGAGCGGGAAGCGGAGGCCAACGATGCCAA
CTGCACCGTTTGTGGTGCCGCCAAGGCATCGGCGCTTTTGGATCTGCGCT
CCAACCATGTAATGCAACGTCGCCTAAGTCGCGACTGGAAGATTCATGCA
GATGTAATCCGATCCACATTGAAGGCCATTTGCGTGGAGTGCGTGTGCAA
GCTGAACATGCACTCGGAGGTCACTCGATCCCTGATGCAGCGCATGCAAC
GGCTGCAGCGTTCCGGTGGTGAAACCACCAAGGTGACAACCACCACGACA
TCGCCCAGCCAGCACAGTCCACCCATTGCTGATGCAGAGGTGTCGACCAC
CTTGATTGAGAGTCAGGAGGAGGTGGCCCACAGCGGGCAGAGCGTTCGCT
CGCGTTCTTCCTGCTCCGTGCTGGAAGTATACCTCGCTCAACAACCATAT
TCTCCATCGGCCAAGGAAACGGAAGAGAAGCATGCGGAGGGCTGGAAATG
GCGAACACGGCTGGAGTGTCACGAATGTGGTCGGGCCTATTTTCGACGGG
ATTACTACGCCCAGCACTTGAGGCGCTGCTCCAAAACGCGCAGGAAGCAG
CCACGTCCATCGCGCGTCAAATGCCGGGTACTAAATGAGGCGAGCTATGA
TGAAGAGGCGCCATCCAGAGCCATCCGATCATCGCGCATATACTACTGCC
GGCATTGCGACGCAGAGTTTGAGACCTTAATCAGTAAGCGACAGCATGAG
CGAATGAAGCATCAGCAGCGATATCCGTGTGATTTGTGCGAAGCCCAGTT
GGACACGAAGTACGAGTGGGAAATGCATCACACCATCTGCCAGGCCAAGC
AGGAGGCCTTAGCAATTGTGGAGCAGCAGGAAGCTGGCCAAACCGTTATG
ACTTCCCGGGTGCCAAGGGCATGCTCGATGCGCTCTCGCTCACGGGCATG
CTCCGAAGCCTGGGATAGGTACGACATGGATGAGGAGGAAGAGGACGAAG
AAGATGAAGAGATAGAAAGCGGTGGGGAGGAACTAGAAGAGGGCGAGGAG
GATGCCATGTACGCGCGACGTATGAACTTTACTGGCGACTGGATTGTTAA
CCACAGCCGCAGCAATAGCAACAGCGCTGGTAATCTCTCCCTTTTGTACG
GAGACTACGGAATGGTGGAAACGCACATGACCACCGACAAGGAGTATGAT
CTTTACCTACTGGACCTGCTCAAGACGCAGGTGCGACTGAAATCATTCAC
TTGTTTCACGCCTGACTGTGGCTACCAGACGGACACCCTAGTGGCTCTAA
TGAAGCACGACTACATGGAGCACTGGAAGATGAGCTGGTTTTACTGTCAT
AAGTGCGGCGATGTGTTCACCAGCAAGGTCTTTTTAGACTACCATATGCA
TCTCCAGAACCGCGGCCTCTACATCTGCCATAAGTGCCGCGAAGAGTTTG
AGTTGCAGCACCAGTTAGATCGGCATTTCCAGCTGCACAGGAAAGGGATC
AATTACCACTGCAATTTCTGCCGATTGGAGTTTCTTAGCGAGGCTAAGCT
GCTGGCCCATTGCAAAAAGCTGGGGCACAGTCCCAACGACGAGCCCCTCA
TCAGCATTGATCGTTCGCTCTCGATTGTCAACTGCCATGTGCCACGGTCA
TCGGACTATTCTCGAATAGTCAAGTCGTACGAAGAACGTGAGTTCTATAT
TCCGCGAATACCGATGCCCTCCACGCAGCCCATGCACTTGCCTCAACATA
AACCCTTTCGTTTCGCTATCGGAATATGTGATTTCGAGGAGCGAAATCCG
AACTGCGTTGGCTGTCACTGACGAAGCTTTCTAGACCAT
BS01583.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11906-RA | 1905 | CG11906-PA | 1..1905 | 17..1921 | 9510 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11906-RA | 2289 | CG11906-RA | 180..2084 | 17..1921 | 9510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:35:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19282771..19283483 | 956..244 | 3550 | 99.9 | Minus |
2R | 25286936 | 2R | 19281623..19282071 | 1921..1473 | 2215 | 99.6 | Minus |
2R | 25286936 | 2R | 19282369..19282713 | 1298..954 | 1725 | 100 | Minus |
2R | 25286936 | 2R | 19283551..19283782 | 248..17 | 1160 | 100 | Minus |
2R | 25286936 | 2R | 19282129..19282308 | 1477..1298 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:35:06 has no hits.
BS01583.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:35 Download gff for
BS01583.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11906-RA | 190..2094 | 17..1923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:16 Download gff for
BS01583.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11906-RA | 180..2084 | 17..1923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:55 Download gff for
BS01583.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11906-RA | 180..2084 | 17..1923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:55 Download gff for
BS01583.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19281621..19282067 | 1477..1923 | 99 | <- | Minus |
2R | 19282130..19282307 | 1299..1476 | 100 | <- | Minus |
2R | 19282369..19282711 | 956..1298 | 100 | <- | Minus |
2R | 19282772..19283479 | 248..955 | 100 | <- | Minus |
2R | 19283552..19283782 | 17..247 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:16 Download gff for
BS01583.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15169126..15169572 | 1477..1923 | 99 | <- | Minus |
arm_2R | 15169635..15169812 | 1299..1476 | 100 | <- | Minus |
arm_2R | 15169874..15170216 | 956..1298 | 100 | <- | Minus |
arm_2R | 15170277..15170984 | 248..955 | 100 | <- | Minus |
arm_2R | 15171057..15171287 | 17..247 | 100 | | Minus |
BS01583.pep Sequence
Translation from 16 to 1920
> BS01583.pep
MQDATAPDPEPSSTNGNCSVEHDNRQDQDENHVGAEREAEANDANCTVCG
AAKASALLDLRSNHVMQRRLSRDWKIHADVIRSTLKAICVECVCKLNMHS
EVTRSLMQRMQRLQRSGGETTKVTTTTTSPSQHSPPIADAEVSTTLIESQ
EEVAHSGQSVRSRSSCSVLEVYLAQQPYSPSAKETEEKHAEGWKWRTRLE
CHECGRAYFRRDYYAQHLRRCSKTRRKQPRPSRVKCRVLNEASYDEEAPS
RAIRSSRIYYCRHCDAEFETLISKRQHERMKHQQRYPCDLCEAQLDTKYE
WEMHHTICQAKQEALAIVEQQEAGQTVMTSRVPRACSMRSRSRACSEAWD
RYDMDEEEEDEEDEEIESGGEELEEGEEDAMYARRMNFTGDWIVNHSRSN
SNSAGNLSLLYGDYGMVETHMTTDKEYDLYLLDLLKTQVRLKSFTCFTPD
CGYQTDTLVALMKHDYMEHWKMSWFYCHKCGDVFTSKVFLDYHMHLQNRG
LYICHKCREEFELQHQLDRHFQLHRKGINYHCNFCRLEFLSEAKLLAHCK
KLGHSPNDEPLISIDRSLSIVNCHVPRSSDYSRIVKSYEEREFYIPRIPM
PSTQPMHLPQHKPFRFAIGICDFEERNPNCVGCH*
BS01583.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11906-PA | 634 | CG11906-PA | 1..634 | 1..634 | 3447 | 100 | Plus |