Clone Sequence Records
BS01586.3prime Sequence
789 bp (774 high quality bases) assembled on 2005-11-29
> BS01586.3prime
ATGGTCTAGAAAGCTTCGTCACGAACATGCCACCTCCGTTGTGGTTGTGT
TGCTGCTGGCATTGCCATTGTTGTGAGGCTGTGTCGGTTCCTGCTCTACA
ACGTCTATCTCGGAGCCGTTCTTGCCAGAGCTCTTAAAGCTTGGCGCACT
TAATTGCGCCGTTGTGGGCGTGGTGGGCGTCCCTGCCCCCATATCGCTGG
AGGCATTCGAGTTCTCCTCTGTCAGCGAATCGCTGAGTCTTTGTATCTTG
GCTCCGCTATCCCGACCGCGATTTCCACTTGATGGCTGCTGGCCTGGGGG
CAGTGGATCCTGCGATTGGGCCAGTTCCGTAGAAAGTCGTTTGCGGTTAG
CCAATAGCGTGTTATTAAAATTATTGTGACTTTCCATTGACTTGCGCTCA
CGCTTTAGGAAGTCAGAGTCTAAATAAAGCGACAGCTGCTTGCGCTTTAC
ATGGCGGGCATCAATGGTCATGCCTTCCTTAAGCATTTTGATGTTAACGC
CGTGCATCATCACATGCTCTGTAAAGTTTTGTATGCTCTCGGTGAGGTCC
ACGTTAAGGTTCTCCGATCGCTCGAATTCCAAGCCTATAAACCACATGGA
GCAGAAGGGTGCCGATGTCACAGCAGACTGGTTTCCCTGCGACTGCTTCA
GATCGTCTTCATTTCCACTGTTGTTTTGTGAGTTGTTGGCACTTTGGCCC
TTCTTAAACTCAAAACACTTGGGATTGACATGGGCCAGTGCAATATGGGG
ATTTCGCTCCAAGTTTGCAATTAGCAGACGCACCTTTGA
BS01586.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9854-PC | 1980 | hrg-RC | 1210..1980 | 789..19 | 3780 | 99.6 | Minus |
| CG9854-PA | 1980 | hrg-RA | 1210..1980 | 789..19 | 3780 | 99.6 | Minus |
| CG9854-PB | 1980 | hrg-RB | 1210..1980 | 789..19 | 3780 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:53:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hrg-RD | 4043 | CG9854-RD | 2088..2859 | 789..18 | 3815 | 99.6 | Minus |
| hrg-RB | 3607 | CG9854-RB | 1652..2423 | 789..18 | 3815 | 99.6 | Minus |
| hrg-RA | 3914 | CG9854-RA | 1959..2730 | 789..18 | 3815 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:53:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19666626..19666918 | 497..789 | 1435 | 99.3 | Plus |
| 2R | 25286936 | 2R | 19666295..19666567 | 226..498 | 1350 | 99.6 | Plus |
| 2R | 25286936 | 2R | 19666023..19666231 | 18..226 | 1045 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:53:53 has no hits.
BS01586.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:14 Download gff for
BS01586.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-PB | 1211..1980 | 19..788 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:21:04 Download gff for
BS01586.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9854-PB | 1211..1980 | 19..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:05:39 Download gff for
BS01586.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RA | 1960..2732 | 15..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:24:30 Download gff for
BS01586.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RA | 1960..2732 | 15..788 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:24:30 Download gff for
BS01586.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19666021..19666230 | 15..225 | 99 | <- | Plus |
| 2R | 19666295..19666567 | 226..498 | 99 | <- | Plus |
| 2R | 19666628..19666917 | 499..788 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:05:39 Download gff for
BS01586.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15553526..15553735 | 15..225 | 99 | <- | Plus |
| arm_2R | 15553800..15554072 | 226..498 | 99 | <- | Plus |
| arm_2R | 15554133..15554422 | 499..788 | 99 | | Plus |
BS01586.5prime Sequence
798 bp (796 high quality bases) assembled on 2005-11-29
> BS01586.5prime
GAAGTTATCAGTCGACATGTGGAATTCCGAACCAACACATCGCCAGCACC
ATCAGCACAATGGAAATTCTACCTCGGGCGGACCGCCCGCCAAGCAATTG
GGCATGACCTCGGCTATCAGTCTGGCCGAGCCACGGCCTGAGGATCTCCA
GCGCACTGATGAGCTCCGCGGCTCACTGGAGCCGTACAACGTCTTTGAGA
GCCAGGACGAGCTAAATCACCGTATGGAGATCCTGGCCAAGCTCAACACA
CTGGTCAAGCAGTGGGTCAAGGAAATCTCTGTCAGCAAGAACATGCCAGA
GTCAGCCGCCGAGAAGCTTGGCGGCAAGATCTACACATTCGGCTCGTATC
GATTGGGTGTCCATCACAAGGGTGCCGATATAGATGCCTTATGTGTTGCT
CCGCGAAATATTGAGCGCACCGACTACTTTCAGAGCTTCTTTGAGGTGCT
CAAGAAGCAGCCAGAGGTAACCGAGTGCCGCTCGGTGGAAGAGGCCTTTG
TGCCCGTCATCAAAATGAACTTTGATGGCATCGAAATTGATTTGCTGTTT
GCCCGTCTGTCCCTAAAAGAAATTCCTGATGACTTTGATCTACGGGATGA
TAACTTACTGCGGAATCTGGATCACCGTTCGGTGCGCAGCCTCAACGGCT
GTCGTGTGACGGACGAGATCCTGGCCCTGGTGCCCAATATTGAAAATTTC
CGCCTGGCACTGCGCACTATCAAATTGTGGGCAAAGAAGCACGGAATCTA
CTCAAATTCATTGGGTTATTTCGGTGGTGTGACCTGGGCCATGTTAGT
BS01586.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9854-PC | 1980 | hrg-RC | 1..782 | 17..798 | 3910 | 100 | Plus |
| CG9854-PA | 1980 | hrg-RA | 1..782 | 17..798 | 3910 | 100 | Plus |
| CG9854-PB | 1980 | hrg-RB | 1..782 | 17..798 | 3910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:35:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hrg-RD | 4043 | CG9854-RD | 877..1660 | 15..798 | 3920 | 100 | Plus |
| hrg-RB | 3607 | CG9854-RB | 441..1224 | 15..798 | 3920 | 100 | Plus |
| hrg-RA | 3914 | CG9854-RA | 748..1531 | 15..798 | 3920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19667528..19668250 | 737..15 | 3615 | 100 | Minus |
| 2R | 25286936 | 2R | 19667404..19667464 | 798..738 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:35:58 has no hits.
BS01586.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:15 Download gff for
BS01586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-PB | 1..782 | 17..798 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:21:06 Download gff for
BS01586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9854-PB | 1..782 | 17..798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:29:42 Download gff for
BS01586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RA | 739..1531 | 3..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:18:21 Download gff for
BS01586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RA | 739..1531 | 3..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:18:21 Download gff for
BS01586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19667404..19667464 | 738..798 | 100 | <- | Minus |
| 2R | 19667528..19668259 | 3..737 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:29:42 Download gff for
BS01586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15554909..15554969 | 738..798 | 100 | <- | Minus |
| arm_2R | 15555033..15555764 | 3..737 | 99 | | Minus |
BS01586.complete Sequence
2014 bp (2014 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ634650
> BS01586.complete
GAAGTTATCAGTCGACATGTGGAATTCCGAACCAACACATCGCCAGCACC
ATCAGCACAATGGAAATTCTACCTCGGGCGGACCGCCCGCCAAGCAATTG
GGCATGACCTCGGCTATCAGTCTGGCCGAGCCACGGCCTGAGGATCTCCA
GCGCACTGATGAGCTCCGCGGCTCACTGGAGCCGTACAACGTCTTTGAGA
GCCAGGACGAGCTAAATCACCGTATGGAGATCCTGGCCAAGCTCAACACA
CTGGTCAAGCAGTGGGTCAAGGAAATCTCTGTCAGCAAGAACATGCCAGA
GTCAGCCGCCGAGAAGCTTGGCGGCAAGATCTACACATTCGGCTCGTATC
GATTGGGTGTCCATCACAAGGGTGCCGATATAGATGCCTTATGTGTTGCT
CCGCGAAATATTGAGCGCACCGACTACTTTCAGAGCTTCTTTGAGGTGCT
CAAGAAGCAGCCAGAGGTAACCGAGTGCCGCTCGGTGGAAGAGGCCTTTG
TGCCCGTCATCAAAATGAACTTTGATGGCATCGAAATTGATTTGCTGTTT
GCCCGTCTGTCCCTAAAAGAAATTCCTGATGACTTTGATCTACGGGATGA
TAACTTACTGCGGAATCTGGATCACCGTTCGGTGCGCAGCCTCAACGGCT
GTCGTGTGACGGACGAGATCCTGGCCCTGGTGCCCAATATTGAAAATTTC
CGCCTGGCACTGCGCACTATCAAATTGTGGGCAAAGAAGCACGGAATCTA
CTCAAATTCATTGGGTTATTTCGGTGGTGTGACCTGGGCCATGTTAGTGG
CCAGAACCTGTCAGCTGTATCCCAACGCTGCGGCTGCCACACTGGTGCAC
AAGTTTTTCTTGGTCTTTTCGCGCTGGAAGTGGCCTAACCCAGTGCTACT
CAAGCACCCGGACAACGTTAATCTAAGATTTCAAGTCTGGGATCCGCGTG
TCAATGCCTCGGATCGGTATCATCTGATGCCCATTATTACGCCCGCATAC
CCACAACAGAATTCCACATTTAATGTGTCCGAATCCACCAAGAAGGTCAT
ATTGACCGAGTTCAATCGCGGCATGAACATCACGGATGAAATCATGCTCG
GTCGCATTCCGTGGGAGCGTTTGTTTGAGGCACCTAGCTTTTTTTACAGA
TACCGCCACTTTATCGTGTTGTTAGTCAACTCGCAGACGGCTGACGATCA
TTTAGAGTGGTGCGGCCTTGTTGAGTCAAAGGTGCGTCTGCTAATTGGCA
ACTTGGAGCGAAATCCCCATATTGCACTGGCCCATGTCAATCCCAAGTGT
TTTGAGTTTAAGAAGGGCCAAAGTGCCAACAACTCACAAAACAACAGTGG
AAATGAAGACGATCTGAAGCAGTCGCAGGGAAACCAGTCTGCTGTGACAT
CGGCACCCTTCTGCTCCATGTGGTTTATAGGCTTGGAATTCGAGCGATCG
GAGAACCTTAACGTGGACCTCACCGAGAGCATACAAAACTTTACAGAGCA
TGTGATGATGCACGGCGTTAACATCAAAATGCTTAAGGAAGGCATGACCA
TTGATGCCCGCCATGTAAAGCGCAAGCAGCTGTCGCTTTATTTAGACTCT
GACTTCCTAAAGCGTGAGCGCAAGTCAATGGAAAGTCACAATAATTTTAA
TAACACGCTATTGGCTAACCGCAAACGACTTTCTACGGAACTGGCCCAAT
CGCAGGATCCACTGCCCCCAGGCCAGCAGCCATCAAGTGGAAATCGCGGT
CGGGATAGCGGAGCCAAGATACAAAGACTCAGCGATTCGCTGACAGAGGA
GAACTCGAATGCCTCCAGCGATATGGGGGCAGGGACGCCCACCACGCCCA
CAACGGCGCAATTAAGTGCGCCAAGCTTTAAGAGCTCTGGCAAGAACGGC
TCCGAGATAGACGTTGTAGAGCAGGAACCGACACAGCCTCACAACAATGG
CAATGCCAGCAGCAACACAACCACAACGGAGGTGGCATGTTCGTGACGAA
GCTTTCTAGACCAT
BS01586.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:35:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hrg-RD | 2484 | CG9854-PD | 1..1981 | 17..1997 | 9890 | 99.9 | Plus |
| hrg-RB | 1980 | CG9854-PB | 1..1980 | 17..1996 | 9885 | 99.9 | Plus |
| hrg-RA | 1980 | CG9854-PA | 1..1980 | 17..1996 | 9885 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hrg-RD | 4043 | CG9854-RD | 877..2859 | 15..1997 | 9900 | 99.9 | Plus |
| hrg-RB | 3607 | CG9854-RB | 441..2423 | 15..1997 | 9900 | 99.9 | Plus |
| hrg-RA | 3914 | CG9854-RA | 748..2730 | 15..1997 | 9900 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:35:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19667528..19668250 | 737..15 | 3615 | 100 | Minus |
| 2R | 25286936 | 2R | 19666626..19667209 | 1518..935 | 2920 | 100 | Minus |
| 2R | 25286936 | 2R | 19666295..19666567 | 1789..1517 | 1350 | 99.6 | Minus |
| 2R | 25286936 | 2R | 19666023..19666231 | 1997..1789 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 19667266..19667464 | 936..738 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:35:23 has no hits.
BS01586.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:39:59 Download gff for
BS01586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RB | 1..1980 | 17..1996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:08 Download gff for
BS01586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RB | 424..2417 | 3..2000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:00 Download gff for
BS01586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RA | 750..2730 | 17..1998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:39:59 Download gff for
BS01586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RB | 424..2417 | 3..2000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:15 Download gff for
BS01586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hrg-RA | 750..2730 | 17..1998 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:15 Download gff for
BS01586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19666022..19666230 | 1790..1998 | 99 | <- | Minus |
| 2R | 19666295..19666567 | 1517..1789 | 99 | <- | Minus |
| 2R | 19666628..19667209 | 935..1516 | 100 | <- | Minus |
| 2R | 19667268..19667464 | 738..934 | 100 | <- | Minus |
| 2R | 19667528..19668248 | 17..737 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:00 Download gff for
BS01586.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15553527..15553735 | 1790..1998 | 99 | <- | Minus |
| arm_2R | 15553800..15554072 | 1517..1789 | 99 | <- | Minus |
| arm_2R | 15554133..15554714 | 935..1516 | 100 | <- | Minus |
| arm_2R | 15554773..15554969 | 738..934 | 100 | <- | Minus |
| arm_2R | 15555033..15555753 | 17..737 | 100 | | Minus |
BS01586.pep Sequence
Translation from 16 to 1995
> BS01586.pep
MWNSEPTHRQHHQHNGNSTSGGPPAKQLGMTSAISLAEPRPEDLQRTDEL
RGSLEPYNVFESQDELNHRMEILAKLNTLVKQWVKEISVSKNMPESAAEK
LGGKIYTFGSYRLGVHHKGADIDALCVAPRNIERTDYFQSFFEVLKKQPE
VTECRSVEEAFVPVIKMNFDGIEIDLLFARLSLKEIPDDFDLRDDNLLRN
LDHRSVRSLNGCRVTDEILALVPNIENFRLALRTIKLWAKKHGIYSNSLG
YFGGVTWAMLVARTCQLYPNAAAATLVHKFFLVFSRWKWPNPVLLKHPDN
VNLRFQVWDPRVNASDRYHLMPIITPAYPQQNSTFNVSESTKKVILTEFN
RGMNITDEIMLGRIPWERLFEAPSFFYRYRHFIVLLVNSQTADDHLEWCG
LVESKVRLLIGNLERNPHIALAHVNPKCFEFKKGQSANNSQNNSGNEDDL
KQSQGNQSAVTSAPFCSMWFIGLEFERSENLNVDLTESIQNFTEHVMMHG
VNIKMLKEGMTIDARHVKRKQLSLYLDSDFLKRERKSMESHNNFNNTLLA
NRKRLSTELAQSQDPLPPGQQPSSGNRGRDSGAKIQRLSDSLTEENSNAS
SDMGAGTPTTPTTAQLSAPSFKSSGKNGSEIDVVEQEPTQPHNNGNASSN
TTTTEVACS*
BS01586.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hrg-PD | 827 | CG9854-PD | 1..659 | 1..659 | 3464 | 100 | Plus |
| hrg-PB | 659 | CG9854-PB | 1..659 | 1..659 | 3464 | 100 | Plus |
| hrg-PA | 659 | CG9854-PA | 1..659 | 1..659 | 3464 | 100 | Plus |
| hrg-PC | 659 | CG9854-PC | 1..659 | 1..659 | 3464 | 100 | Plus |
