Clone BS01589 Report

Search the DGRC for BS01589

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:15
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG11696-RA
Protein status:BS01589.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS01589.3prime Sequence

903 bp (798 high quality bases) assembled on 2005-11-29

> BS01589.3prime
ATGGTCTAGAAAGCTTCGTCAGTCGGGCGTGGGGCACACGGAGCTGTTGC
TGCCGAAATCGAAGCCCTCGGTATCGGGTATCTCAATCAGCGACTTGGCA
ATGCCACCGAGTGGCGGCAGCATGTGCCCGGCTAGATTAGTCGGAGCTGC
CGCTGGAGGAGCAGGCTGGTTAGGATGATTGGGATGAGCAAGTGGAGCCG
CTGTGGAGGTAATGCTACTGCTGGGCTGCGAGTACTTTCTCACCCAGTCG
TTGGGATGCATCTTCTTCTTGTGGTTGTGCATGTTGGCATGAGACTTGAA
GGTGCGCGTACAAAACTGGCATTGGTACAGATCGATGCCCGTGTGAGTGG
CCATGTGCTCGGCCAATGCCCGCGGCAGCTTGAACTCCTTGTCGCAGAGA
CTGCACTTGTGCCGCTTGGCGGAGTGATGGTACCGCATGTGGCTGCTGAG
TGCGGCACGGGATGACTTCTCTGCATTGCAGAGCAGGCATCGGTACTTGG
TGTCGCCGTCGCGGTCATCGTGGCGTGCCAGATGCTTGCGCAGGCTCCGT
TCGTCCCGCAGCCAGCGGCCGCACAGGGTACACTGCACCTCCGCCACCGG
CCCGTCCGGATGCAACGCCTTCTTGTGGATGAGAAAGTTGGCCTTGCTCC
TGAAGTGTGTACCGCATATGTCGCATATGATGGGCGTAAAGTCTGCCGCA
TGCATGCGCTTTACATGGGCACTTAGCTCAAACTTGGTGCGGAATGTCTT
GCTGCAGGTGTCGCACACCTCGGGACGCTCGGTGCCCTTGTGTCCTTTAA
GATGCATGGTCAGCAGGAATTTCTTGCAAAGCGCGCCTCGCAGATGGCAC
ACTGGTGGACCAGCTCTTGCTGCTGCGAGTGGAAGCGCAGCATGTGCATC
ACC

BS01589.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11696-PA 1995 CG11696-RA 1188..1995 826..19 4040 100 Minus
CG11696-PA 1995 CG11696-RA 1110..1187 903..826 390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11696-RA 2235 CG11696-RA 1237..2122 903..19 4405 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11575254..11575639 745..360 1930 100 Minus
X 23542271 X 11575698..11576039 360..19 1710 100 Minus
X 23542271 X 11575036..11575194 903..746 745 99.4 Minus
Blast to na_te.dros performed on 2015-02-10 17:19:57 has no hits.

BS01589.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:19 Download gff for BS01589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11696-PA 1110..1995 19..903 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:21:12 Download gff for BS01589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11696-PA 1110..1995 19..903 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:09:09 Download gff for BS01589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11696-RA 1237..2126 12..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:12 Download gff for BS01589.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11696-RA 1237..2126 12..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:12 Download gff for BS01589.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11575036..11575194 746..903 99 -> Minus
X 11575254..11575638 361..745 100 -> Minus
X 11575698..11576043 12..360 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:09:09 Download gff for BS01589.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11469069..11469227 746..903 99 -> Minus
arm_X 11469287..11469671 361..745 100 -> Minus
arm_X 11469731..11470076 12..360 98   Minus

BS01589.5prime Sequence

806 bp (716 high quality bases) assembled on 2005-11-29

> BS01589.5prime
GAAGTTATCAGTCGACATGATATGCCGACTCTGCCTGGAGGATGCTGAGC
ACGGGGTGCCCATTTTCGGCCAGGAACCGCCAATGGGACAACCGGCACAT
CGCCAGCTGGCCGAGCTGATCGAGCGACATCTGCTGCTGGTGTTGGCGGA
AAACGACGTGGTGTCCACGTGCCTGTGCAACCGCTGCTGGCGGCAGCTGG
CCGAGATCGAGCAATTCTGTTCCATGGTAGCGGAGAAGCAGCGGTCGCTG
CACCGCTCCTTGCAGCTGAAAACTGAATTGCCGGAGCTGCCCGAACTGAC
GGAGCCGGAGCCCGCCCTGGTCGTGTGGAACACGGAGTCGCCAATCGAGC
CAAAGCTCAGCTATGAGGGCGATGACATCAAGGATCACATACTGTGCGAA
CCCGTCATCGACGCCTTGTCCGCGGGCGATGAAAAAGACAGTGACTATGG
CGACACCTTTGAACCGGACTTCGAGCCGGAATCGCAGCCAGATGAAGAAG
AAGAACCGGAGCCGGATCCGGTAAAACCGCGCCCCAGGGGCAGGCCGCGC
AAAACTGCGCTGCAGCAAACGCATCAAATCATCAAAAGGAAGTACGAGAA
GCGCAAACAGCAGAACAAGGCCAAGATCACAGAGTTATCATTACGGGAAT
CAAGAGCCCGGCAAAGGGAACTTAAACGCAGCAGTGCTGGAGCAGAGGAT
GATCAGGATGGCGACGAAGACGAGGAGGACGAAGAAGATGTCGGGGGCGA
GCTAACACCAGATGCCGACGAACAGCCAAAGCCGCGCGGCAAACGTGGCC
GACCCA

BS01589.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11696-PA 1995 CG11696-RA 1..790 17..806 3950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11696-RA 2235 CG11696-RA 128..917 17..806 3950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11574052..11574716 142..806 3325 100 Plus
X 23542271 X 11573858..11573983 17..142 630 100 Plus
Blast to na_te.dros performed 2015-02-11 23:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 557..652 711..805 134 63.9 Plus

BS01589.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:20 Download gff for BS01589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11696-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:21:13 Download gff for BS01589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11696-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:07:58 Download gff for BS01589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11696-RA 119..916 5..805 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:05 Download gff for BS01589.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11696-RA 119..916 5..805 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:05 Download gff for BS01589.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11573849..11573983 5..142 96 -> Plus
X 11574053..11574715 143..805 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:07:58 Download gff for BS01589.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11467882..11468016 5..142 96 -> Plus
arm_X 11468086..11468748 143..805 100   Plus

BS01589.complete Sequence

2029 bp (2029 high quality bases) assembled on 2006-03-24

GenBank Submission: FJ634651

> BS01589.complete
GAAGTTATCAGTCGACATGATATGCCGACTCTGCCTGGAGGATGCTGAGC
ACGGGGTGCCCATTTTCGGCCAGGAACCGCCAATGGGACAACCGGCACAT
CGCCAGCTGGCCGAGCTGATCGAGCGACATCTGCTGCTGGTGTTGGCGGA
AAACGACGTGGTGTCCACGTGCCTGTGCAACCGCTGCTGGCGGCAGCTGG
CCGAGATCGAGCAATTCTGTTCCATGGTAGCGGAGAAGCAGCGGTCGCTG
CACCGCTCCTTGCAGCTGAAAACTGAATTGCCGGAGCTGCCCGAACTGAC
GGAGCCGGAGCCCGCCCTGGTCGTGTGGAACACGGAGTCGCCAATCGAGC
CAAAGCTCAGCTATGAGGGCGATGACATCAAGGATCACATACTGTGCGAA
CCCGTCATCGACGCCTTGTCCGCGGGCGATGAAAAAGACAGTGACTATGG
CGACACCTTTGAACCGGACTTCGAGCCGGAATCGCAGCCAGATGAAGAAG
AAGAACCGGAGCCGGATCCGGTAAAACCGCGCCCCAGGGGCAGGCCGCGC
AAAACTGCGCTGCAGCAAACGCATCAAATCATCAAAAGGAAGTACGAGAA
GCGCAAACAGCAGAACAAGGCCAAGATCACAGAGTTATCATTACGGGAAT
CAAGAGCCCGGCAAAGGGAACTTAAACGCAGCAGTGCTGGAGCAGAGGAT
GATCAGGATGGCGACGAAGACGAGGAGGACGAAGAAGATGTCGGGGGCGA
GCTAACACCAGATGCCGACGAACAGCCAAAGCCGCGCGGCAAACGTGGCC
GACCCAAGACCAAGAAACTGGTAACCGCCGACGATAATGATGATACCTCG
GAGGTGCCCGTCAAGCGCAGCAGCATCAAGGAAATGGACGACTATATAGC
CGCCAATGTTAAGCTCGACTGCGCCATTTGCGCCGCCCCGCTGGAAGACT
TCAACGATCTCAAGCGCCACTTTCGCGTGGAGCACGACTGCACTGGCTAT
GTGAAGTGCTGCAACAATCGGTACAAGAAGCGGACACTGTACGTCGACCA
TTTGCACTGCCACAAGGATCCGCAGTACTTTAGCTGCCAGAGCTGCCGCA
AGAACTTCCTTAACCGCAACAGCCAGGTGATGCACATGCTGCGCTTCCAC
TCGCAGCAGCAAGAGCTGGTCCACCAGTGTGCCATCTGCGAGGCGCGCTT
TGCCAAGAAATTCCTGCTGACCATGCATCTTAAAGGACACAAGGGCACCG
AGCGTCCCGAGGTGTGCGACACCTGCAGCAAGACATTCCGCACCAAGTTT
GAGCTAAGTGCCCATGTAAAGCGCATGCATGCGGCAGACTTTACGCCCAT
CATATGCGACATATGCGGTACACACTTCAGGAGCAAGGCCAACTTTCTCA
TCCACAAGAAGGCGTTGCATCCGGACGGGCCGGTGGCGGAGGTGCAGTGT
ACCCTGTGCGGCCGCTGGCTGCGGGACGAACGGAGCCTGCGCAAGCATCT
GGCACGCCACGATGACCGCGACGGCGACACCAAGTACCGATGCCTGCTCT
GCAATGCAGAGAAGTCATCCCGTGCCGCACTCAGCAGCCACATGCGGTAC
CATCACTCCGCCAAGCGGCACAAGTGCAGTCTCTGCGACAAGGAGTTCAA
GCTGCCGCGGGCATTGGCCGAGCACATGGCCACTCACACGGGCATCGATC
TGTACCAATGCCAGTTTTGTACGCGCACCTTCAAGTCTCATGCCAACATG
CACAACCACAAGAAGAAGATGCATCCCAACGACTGGGTGAGAAAGTACTC
GCAGCCCAGCAGTAGCATTACCTCCACAGCGGCTCCACTTGCTCATCCCA
ATCATCCTAACCAGCCTGCTCCTCCAGCGGCAGCTCCGACTAATCTAGCC
GGGCACATGCTGCCGCCACTCGGTGGCATTGCCAAGTCGCTGATTGAGAT
ACCCGATACCGAGGGCTTCGATTTCGGCAGCAACAGCTCCGTGTGCCCCA
CGCCCGACTGACGAAGCTTTCTAGACCAT

BS01589.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11696-RA 1995 CG11696-PA 1..1995 17..2011 9975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11696-RA 2235 CG11696-RA 128..2122 17..2011 9975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11574052..11575194 142..1284 5715 100 Plus
X 23542271 X 11575254..11575639 1285..1670 1930 100 Plus
X 23542271 X 11575698..11576039 1670..2011 1710 100 Plus
X 23542271 X 11573858..11573983 17..142 630 100 Plus
Blast to na_te.dros performed 2014-11-27 14:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 557..667 711..818 150 64.3 Plus

BS01589.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:51 Download gff for BS01589.complete
Subject Subject Range Query Range Percent Splice Strand
CG11696-RA 1..1995 17..2011 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:33 Download gff for BS01589.complete
Subject Subject Range Query Range Percent Splice Strand
CG11696-RA 49..2056 5..2018 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:54 Download gff for BS01589.complete
Subject Subject Range Query Range Percent Splice Strand
CG11696-RA 128..2122 17..2013 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:52 Download gff for BS01589.complete
Subject Subject Range Query Range Percent Splice Strand
CG11696-RA 49..2056 5..2018 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:17 Download gff for BS01589.complete
Subject Subject Range Query Range Percent Splice Strand
CG11696-RA 128..2122 17..2013 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:17 Download gff for BS01589.complete
Subject Subject Range Query Range Percent Splice Strand
X 11573858..11573983 17..142 100 -> Plus
X 11574053..11575194 143..1284 100 -> Plus
X 11575254..11575638 1285..1669 100 -> Plus
X 11575698..11576039 1670..2013 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:54 Download gff for BS01589.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11467891..11468016 17..142 100 -> Plus
arm_X 11468086..11469227 143..1284 100 -> Plus
arm_X 11469287..11469671 1285..1669 100 -> Plus
arm_X 11469731..11470072 1670..2013 99   Plus

BS01589.pep Sequence

Translation from 16 to 2010

> BS01589.pep
MICRLCLEDAEHGVPIFGQEPPMGQPAHRQLAELIERHLLLVLAENDVVS
TCLCNRCWRQLAEIEQFCSMVAEKQRSLHRSLQLKTELPELPELTEPEPA
LVVWNTESPIEPKLSYEGDDIKDHILCEPVIDALSAGDEKDSDYGDTFEP
DFEPESQPDEEEEPEPDPVKPRPRGRPRKTALQQTHQIIKRKYEKRKQQN
KAKITELSLRESRARQRELKRSSAGAEDDQDGDEDEEDEEDVGGELTPDA
DEQPKPRGKRGRPKTKKLVTADDNDDTSEVPVKRSSIKEMDDYIAANVKL
DCAICAAPLEDFNDLKRHFRVEHDCTGYVKCCNNRYKKRTLYVDHLHCHK
DPQYFSCQSCRKNFLNRNSQVMHMLRFHSQQQELVHQCAICEARFAKKFL
LTMHLKGHKGTERPEVCDTCSKTFRTKFELSAHVKRMHAADFTPIICDIC
GTHFRSKANFLIHKKALHPDGPVAEVQCTLCGRWLRDERSLRKHLARHDD
RDGDTKYRCLLCNAEKSSRAALSSHMRYHHSAKRHKCSLCDKEFKLPRAL
AEHMATHTGIDLYQCQFCTRTFKSHANMHNHKKKMHPNDWVRKYSQPSSS
ITSTAAPLAHPNHPNQPAPPAAAPTNLAGHMLPPLGGIAKSLIEIPDTEG
FDFGSNSSVCPTPD*

BS01589.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11696-PA 664 CG11696-PA 1..664 1..664 3612 100 Plus
CG11695-PA 544 CG11695-PA 1..497 1..586 1072 40.3 Plus
CG8388-PA 572 CG8388-PA 32..522 34..590 613 28.1 Plus
CG15073-PA 580 CG15073-PA 1..519 1..590 586 28.6 Plus
grau-PA 570 CG33133-PA 141..531 211..590 583 33.6 Plus
CG8388-PA 572 CG8388-PA 206..426 412..642 164 24.6 Plus