Clone Sequence Records
BS01591.3prime Sequence
830 bp (725 high quality bases) assembled on 2005-11-29
> BS01591.3prime
ATGGTCTAGAAAGCTTCGTTATTTTGCGGATCGGCGATTCTTAAGGTTGC
GTTCCAGTTTGTGATGAGGCTTGCCTTCGTTCTTTCCTGTCTTCTGAGTG
ATTCTTTGAGCATCCCGACTGCGAGTTTGGCGCACGGATTGCTGGGCATC
CTTGGGAGGATTGGTTTTACGCTGCTTTGGAGGCGGCGGCGTGAAGGATT
CGTCGCTATCGTCTAGGTGGTCCTCATAGAGAGCATCGTCTTCTAAGTAT
TCCGTCACGAATTCTTCCTGCTTCACATTGTCCATGTCTTCAAAATCGTC
AAGATGTTCCTCCTTCTCATCGACGCCGCCTTCTCCTTCGCCGTCGTCTT
CGAACTCGTTCTGGTACGGCTCCATTTCCACCACATGATCGTCCTCGATG
TGGCGCTGCAGGCATTTCTGCGTCAAGAAGATGTGGTCACAGAACTCGCA
GGCATGGCGCTCGCTCTGCTTGTGCTGGTCCATGTGGCTCTCGACACTGT
CGATATCTTCGATCTGCTTGCGACACATGGGACATTTCAGGCTGGCGGTG
GCATGAATGAGCGCATGATCCAGTAGGTCGTTATAGTTGCTGTACGACAC
CTTGCACTCACTGCACACGAACGAGGCGTCGGAAGTCTGCGTGTGCGTGC
GCAGGTGGCGCGAGAGATGATGCGACAGCATGTAGGACTTGTGGCAGTAC
TTGCAGGGATAGGCTCTCTTCCCGGCGTGGGCAACCAGGTGGCGGGCCAG
CTTGGAAGCGGTGGAAAAGCTTCTCTCGNCATGCTGACAGGGGAAGGGAA
GATTGGTGGAGTGGACTGTCTCATGACGCT
BS01591.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3941-PA | 2052 | pita-RA | 1241..2052 | 830..19 | 4016 | 99.7 | Minus |
| CG3941-PB | 1872 | pita-RB | 1061..1872 | 830..19 | 4016 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:44:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pita-RB | 2529 | CG3941-RB | 1594..2405 | 830..19 | 4034 | 99.8 | Minus |
| pita-RA | 2472 | CG3941-RA | 1537..2348 | 830..19 | 4034 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:44:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23549091..23549893 | 19..821 | 3989 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:44:37 has no hits.
BS01591.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:23 Download gff for
BS01591.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3941-PB | 1061..1872 | 19..830 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:21:17 Download gff for
BS01591.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3941-PB | 1061..1872 | 19..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:28:55 Download gff for
BS01591.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 1537..2351 | 16..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:54:18 Download gff for
BS01591.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 1537..2351 | 16..830 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:54:18 Download gff for
BS01591.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23549088..23549893 | 16..821 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:28:55 Download gff for
BS01591.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19436611..19437416 | 16..821 | 99 | | Plus |
BS01591.5prime Sequence
840 bp (825 high quality bases) assembled on 2005-11-29
> BS01591.5prime
GAAGTTATCAGTCGACATGGCCGCGAAACTGGAGGTGCGCGAGGCCATGC
TGACCGAGAAGAGGGTCTGCCGCTTCTGTCTGACCGAGCAGAAGCTGGCC
TCGATTTTCGAGGAGAATCCGCGGGTGAAAACAACCGCCAATCTGCCGCT
GCAGATTATGGCCATCACGGCGATCGAGGTCTACGCCGGCGACGGAATGC
CGGGGCACATCTGTCTGGAGTGCCGCCTCCTCTTCGAGCACTGCTACCGC
TTCAAGCAGATGTGCAAGCGGGCGGAGACCCTCCTGCGCCAGTATCCGCT
CACGGGTAACTGGCCATCGCCGCTGGAGAAGCCCCGTGCGCCCATGACGA
TGGTGGCTTCCAAGAAGTTGTTGGTCGTGCCAGCAAAGACAGCCGAGCCA
AGCGAAACGCCCAAAAAGCTGCTGAACACAATGGCCAAATCCAGTAGTCA
GGTGATCATCGAGGACGTCCAGGTGCTGGAGAGCGCCATGGTGACCCCCA
GGACGGTAGCCGGTTCCTCTCCAGTGCCACGTCGTTCGCACGCCTATGAG
CTGAAGGTGGATAACAACCAGGAGCTGTCCATGGACGATGTGCAGAGCAT
GCTGGAGGATATGGCCAGTGAGCTAGAGAAGGAGTTCCCCGATATCCCCC
AGAAGGCATCACCCGTCAAGCCGAAGGTGCTGAACAAGTCCTCGATTAGG
ATCTTGAACAAGGGACCCGCCGCTCCGGTGGAACCGCGCCTGGCCACACC
CAAAGTCAAGCGAGATGATAGTGGCAATGTGGCCATAGTGACAGAGGTTC
TGGACTCGGATCTGCCATTGGACGATCAAGATGATCCGAC
BS01591.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3941-PA | 2052 | pita-RA | 1..824 | 17..840 | 4120 | 100 | Plus |
| CG3941-PB | 1872 | pita-RB | 1..644 | 197..840 | 3220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:15:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pita-RA | 2472 | CG3941-RA | 297..1120 | 17..840 | 4120 | 100 | Plus |
| pita-RB | 2529 | CG3941-RB | 514..1177 | 177..840 | 3320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23550375..23551038 | 840..177 | 3320 | 100 | Minus |
| 2R | 25286936 | 2R | 23554253..23554416 | 180..17 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:15:29 has no hits.
BS01591.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:24 Download gff for
BS01591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-PA | 1..824 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:21:18 Download gff for
BS01591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3941-PA | 1..824 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:09:13 Download gff for
BS01591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 295..1120 | 13..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:50:28 Download gff for
BS01591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 295..1120 | 13..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:50:28 Download gff for
BS01591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23550375..23551036 | 179..840 | 100 | <- | Minus |
| 2R | 23554255..23554418 | 13..178 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:09:13 Download gff for
BS01591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19437898..19438559 | 179..840 | 100 | <- | Minus |
| arm_2R | 19441778..19441941 | 13..178 | 98 | | Minus |
BS01591.complete Sequence
2086 bp (2086 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ634652
> BS01591.complete
GAAGTTATCAGTCGACATGGCCGCGAAACTGGAGGTGCGCGAGGCCATGC
TGACCGAGAAGAGGGTCTGCCGCTTCTGTCTGACCGAGCAGAAGCTGGCC
TCGATTTTCGAGGAGAATCCGCGGGTGAAAACAACCGCCAATCTGCCGCT
GCAGATTATGGCCATCACGGCGATCGAGGTCTACGCCGGCGACGGAATGC
CGGGGCACATCTGTCTGGAGTGCCGCCTCCTCTTCGAGCACTGCTACCGC
TTCAAGCAGATGTGCAAGCGGGCGGAGACCCTCCTGCGCCAGTATCCGCT
CACGGGTAACTGGCCATCGCCGCTGGAGAAGCCCCGTGCGCCCATGACGA
TGGTGGCTTCCAAGAAGTTGTTGGTCGTGCCAGCAAAGACAGCCGAGCCA
AGCGAAACGCCCAAAAAGCTGCTGAACACAATGGCCAAATCCAGTAGTCA
GGTGATCATCGAGGACGTCCAGGTGCTGGAGAGCGCCATGGTGACCCCCA
GGACGGTAGCCGGTTCCTCTCCAGTGCCACGTCGTTCGCACGCCTATGAG
CTGAAGGTGGATAACAACCAGGAGCTGTCCATGGACGATGTGCAGAGCAT
GCTGGAGGATATGGCCAGTGAGCTAGAGAAGGAGTTCCCCGATATCCCCC
AGAAGGCATCACCCGTCAAGCCGAAGGTGCTGAACAAGTCCTCGATTAGG
ATCTTGAACAAGGGACCCGCCGCTCCGGTGGAACCGCGCCTGGCCACACC
CAAAGTCAAGCGAGATGATAGTGGCAATGTGGCCATAGTGACAGAGGTTC
TGGACTCGGATCTGCCATTGGACGATCAAGATGATCCGACCAAGAACGCC
GAGAAGGTGGCCACCGATGTGTTCCCCTGTCCCGATTGCGAACGCTCCTT
TCCGCTGCAGCAGCTGCTCGAGATCCATCGGCTGAATCACACTCGCTCGC
GCAGCTTCCAGTGTCTCCTGTGCGAGAAGAGCTTCTTCTCCAAGTACGAC
CTGGCCAAGCACAACTTTGTGCACACCGGCGAGCGGCCATTCAAGTGCGC
CATCTGCTCGAAAGCCTTCACACGGAAGGCATTGCTCCATCGCCACGAGC
GCACCCACACGGACGTACCCAAGTTCATCTGCGTGTACTGCGAGAAGCCC
TTCCTTTCGCGCCAGGAGATGGAGAAGCACGCCGAGCGACATCAGAAGAA
GCGTCCGTTCCAATGCGGTGTCTGCACCAAGTCGTTTGCCTTCAAGCAGG
GATTGGAGCGTCATGAGACAGTCCACTCCACCAATCTTCCCTTCCCCTGT
CAGCATTGCGAGAGAAGCTTTTCCACCGCTTCCAAGCTGGCCCGCCACCT
GGTTGCCCACGCCGGGAAGAGAGCCTATCCCTGCAAGTACTGCCACAAGT
CCTACATGCTGTCGCATCATCTCTCGCGCCACCTGCGCACGCACACGCAG
ACTTCCGACGCCTCGTTCGTGTGCAGTGAGTGCAAGGTGTCGTACAGCAA
CTATAACGACCTACTGGATCATGCGCTCATTCATGCCACCGCCAGCCTGA
AATGTCCCATGTGTCGCAAGCAGATCGAAGATATCGACAGTGTCGAGAGC
CACATGGACCAGCACAAGCAGAGCGAGCGCCATGCCTGCGAGTTCTGTGA
CCACATCTTCTTGACGCAGAAATGCCTGCAGCGCCACATCGAGGACGATC
ATGTGGTGGAAATGGAGCCGTACCAGAACGAGTTCGAAGACGACGGCGAA
GGAGAAGGCGGCGTCGATGAGAAGGAGGAACATCTTGACGATTTTGAAGA
CATGGACAATGTGAAGCAGGAAGAATTCGTGACGGAATACTTAGAAGACG
ATGCTCTCTATGAGGACCACCTAGACGATAGCGACGAATCCTTCACGCCG
CCGCCTCCAAAGCAGCGTAAAACCAATCCTCCCAAGGATGCCCAGCAATC
CGTGCGCCAAACTCGCAGTCGGGATGCTCAAAGAATCACTCAGAAGACAG
GAAAGAACGAAGGCAAGCCTCATCACAAACTGGAACGCAACCTTAAGAAT
CGCCGATCCGCAAAATAACGAAGCTTTCTAGACCAT
BS01591.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pita-RA | 2052 | CG3941-PA | 1..2052 | 17..2068 | 10260 | 100 | Plus |
| pita-RB | 1872 | CG3941-PB | 1..1872 | 197..2068 | 9360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pita-RA | 2472 | CG3941-RA | 297..2348 | 17..2068 | 10260 | 100 | Plus |
| pita-RB | 2529 | CG3941-RB | 514..2405 | 177..2068 | 9460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23549948..23551038 | 1267..177 | 5455 | 100 | Minus |
| 2R | 25286936 | 2R | 23549091..23549893 | 2068..1266 | 4015 | 100 | Minus |
| 2R | 25286936 | 2R | 23554253..23554416 | 180..17 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:51:53 has no hits.
BS01591.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:40:00 Download gff for
BS01591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 1..2052 | 17..2068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:26:09 Download gff for
BS01591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 301..2357 | 13..2071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:55 Download gff for
BS01591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 297..2350 | 17..2070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:40:01 Download gff for
BS01591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 301..2357 | 13..2071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:53 Download gff for
BS01591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pita-RA | 297..2350 | 17..2070 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:53 Download gff for
BS01591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23549089..23549891 | 1268..2070 | 99 | <- | Minus |
| 2R | 23549948..23551036 | 179..1267 | 100 | <- | Minus |
| 2R | 23554255..23554416 | 17..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:55 Download gff for
BS01591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19436612..19437414 | 1268..2070 | 99 | <- | Minus |
| arm_2R | 19437471..19438559 | 179..1267 | 100 | <- | Minus |
| arm_2R | 19441778..19441939 | 17..178 | 100 | | Minus |
BS01591.pep Sequence
Translation from 16 to 2067
> BS01591.pep
MAAKLEVREAMLTEKRVCRFCLTEQKLASIFEENPRVKTTANLPLQIMAI
TAIEVYAGDGMPGHICLECRLLFEHCYRFKQMCKRAETLLRQYPLTGNWP
SPLEKPRAPMTMVASKKLLVVPAKTAEPSETPKKLLNTMAKSSSQVIIED
VQVLESAMVTPRTVAGSSPVPRRSHAYELKVDNNQELSMDDVQSMLEDMA
SELEKEFPDIPQKASPVKPKVLNKSSIRILNKGPAAPVEPRLATPKVKRD
DSGNVAIVTEVLDSDLPLDDQDDPTKNAEKVATDVFPCPDCERSFPLQQL
LEIHRLNHTRSRSFQCLLCEKSFFSKYDLAKHNFVHTGERPFKCAICSKA
FTRKALLHRHERTHTDVPKFICVYCEKPFLSRQEMEKHAERHQKKRPFQC
GVCTKSFAFKQGLERHETVHSTNLPFPCQHCERSFSTASKLARHLVAHAG
KRAYPCKYCHKSYMLSHHLSRHLRTHTQTSDASFVCSECKVSYSNYNDLL
DHALIHATASLKCPMCRKQIEDIDSVESHMDQHKQSERHACEFCDHIFLT
QKCLQRHIEDDHVVEMEPYQNEFEDDGEGEGGVDEKEEHLDDFEDMDNVK
QEEFVTEYLEDDALYEDHLDDSDESFTPPPPKQRKTNPPKDAQQSVRQTR
SRDAQRITQKTGKNEGKPHHKLERNLKNRRSAK*
BS01591.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pita-PA | 683 | CG3941-PA | 1..683 | 1..683 | 3644 | 100 | Plus |
| pita-PB | 623 | CG3941-PB | 1..623 | 61..683 | 3346 | 100 | Plus |
| crol-PG | 878 | CG14938-PG | 276..552 | 285..562 | 478 | 32.3 | Plus |
| crol-PD | 878 | CG14938-PD | 276..552 | 285..562 | 460 | 32.3 | Plus |
| CG5245-PA | 501 | CG5245-PA | 31..409 | 194..560 | 455 | 29.4 | Plus |
| crol-PG | 878 | CG14938-PG | 333..647 | 286..568 | 452 | 30.2 | Plus |
| crol-PG | 878 | CG14938-PG | 216..492 | 281..558 | 449 | 28.3 | Plus |
| CG5245-PA | 501 | CG5245-PA | 221..491 | 286..558 | 439 | 33.2 | Plus |
| CG5245-PA | 501 | CG5245-PA | 297..492 | 279..474 | 387 | 37.4 | Plus |
| CG5245-PA | 501 | CG5245-PA | 274..490 | 284..502 | 370 | 33.3 | Plus |
| CG5245-PA | 501 | CG5245-PA | 381..493 | 279..391 | 203 | 34.5 | Plus |
