Clone BS01593 Report

Search the DGRC for BS01593

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:15
Well:93
Vector:pDNR-Dual
Associated Gene/Transcriptsim-RA
Protein status:BS01593.pep: full length peptide match
Sequenced Size:2101

Clone Sequence Records

BS01593.3prime Sequence

888 bp (761 high quality bases) assembled on 2005-11-29

> BS01593.3prime
ATGGTCTAGAAAGCTTCGTCACCAGGTGGCGTATTGGTATTGCAGATGCT
GCTGCTCCATCAGATGCTGCTGCTGCTGCTGATGCTGATGCTGTTGCGAA
CTGTTGTCGGAGAAGTAGCTCAGCTCGAAGTTGTGACTCAGATCGCTGTA
GGTCGTCTGTGAGGGCGATGTTTCGTTCACAATCGAGGCATTTCCGGTGG
ACAGCTGCCTTTCGCTCTCCGAACTGCTCGAGCAGCTATTCGAATTGGCC
GAGAATGGGCGTATCATCGAGGTGGCCACATCCACCGTCGCATCGTAGTC
ATAGTAATAGTGATTGTTGTTATTGTAGTACAGGTTGCCGGTGGTCGTGT
CCGGATACTGCATCTCCGTGGAGTAAACGCCGGAGGACGAGGCCGACGCA
CTGGATCCACCGCCCGCACTTGAGGCGGTGCCACCGCCCACACTGCTGCT
CGAGCTCACCACCAGGTCGTTCAAGGGCGGATAAAGCTGCGTGTAACTCA
GGCTATCGTGATCCATGCTGCCGGACTGCTGCTGCTGTTGCACATGATGG
TGGTGCCACACGCCGTTGTTATTGTTGCTACTACTACTACTATTATTCGT
TGGGGGCACGGGCGTTACGGCCGGCTGCAGCGGCAGCTCTGGCTCGAAAT
ACGGATCCAGCTTGGGACTTGCACTGAGGGCCAGACTAACTGGCGTACCC
GGACCCACCGGCTGACCCGTTGCTCCGGCGCACTGCGGCTGCACCACCAC
CGACTGCTGGGGCACCACCACCACCTGGGCCTGCACCGCTTGAGCCACAT
GTGCCGCCTGTGCCGCCTGTGCCGCTTGGGCCGCTTGGGCCGCTTGAGCT
GCCTGTGCCGCTTGAGCCGCCGGCGATATGGGCTCCCG

BS01593.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7771-PA 2067 sim-RA 1198..2067 888..19 4350 100 Minus
CG7771-PB 1995 sim-RB 1126..1995 888..19 4350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
sim-RD 3186 CG7771-RD 1659..2528 888..19 4350 100 Minus
sim-RC 2882 CG7771-RC 1355..2224 888..19 4350 100 Minus
sim-RB 3162 CG7771-RB 1635..2504 888..19 4350 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13076597..13077466 888..19 4350 100 Minus
Blast to na_te.dros performed 2015-02-10 17:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker 7256 Stalker STALKER 7256bp 2758..2820 337..273 112 67.7 Minus

BS01593.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:25 Download gff for BS01593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7771-PB 1126..1995 19..888 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:21:20 Download gff for BS01593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7771-PB 1126..1995 19..888 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:08:59 Download gff for BS01593.3prime
Subject Subject Range Query Range Percent Splice Strand
sim-RB 1631..2500 19..888 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:50 Download gff for BS01593.3prime
Subject Subject Range Query Range Percent Splice Strand
sim-RB 1635..2504 19..888 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:50 Download gff for BS01593.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13076597..13077466 19..888 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:08:59 Download gff for BS01593.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8902319..8903188 19..888 100   Minus

BS01593.5prime Sequence

903 bp (750 high quality bases) assembled on 2005-11-29

> BS01593.5prime
GAAGTTATCAGTCGACATGACTAACCATCGGCGAGTGCGCAAGGATTGCT
ATGAGAGCAGATTGCATGATATAGCCAAAACGTGTGCCATGAAGGAGAAA
AGCAAAAATGCGGCACGCACGCGACGTGAAAAGGAAAACACGGAATTCTG
TGAATTGGCCAAATTACTGCCGCTGCCGGCGGCGATTACTTCGCAACTGG
ACAAGGCCTCCGTCATCCGGCTGACCACGTCGTATTTGAAAATGCGCCAA
GTCTTTCCCGATGGTCTTGGCGAAGCCTGGGGCTCATCGCCTGCCATGCA
ACGCGGCGCCACCATCAAGGAGCTGGGCTCCCATCTGCTGCAGACGCTGG
ACGGATTCATCTTCGTGGTGGCTCCGGATGGCAAAATCATGTACATCTCG
GAAACGGCCTCCGTGCATTTGGGCCTCAGTCAGGTTGAGCTGACGGGCAA
CTCGATATTCGAGTACATACACAACTACGATCAGGACGAGATGAATGCCA
TTTTGTCGCTGCATCCGCACATCAACCAGCATCCACTCGCCCAGACGCAC
ACGCCCATCGGCAGTCCCAATGGCGTCCAGCATCCATCCGCCTACGACCA
CGATCGCGGATCGCACACCATCGAGATCGAGAAGACCTTCTTCCTGCGCA
TGAAGTGCGTCCTGGCCAAAAGGAACGCGGGCCTCACCACCTCCGGATTT
AAGGTGATACACTGCTCCGGCTATCTGAAGGCTCGCATCTATCCCGATCG
CGGGGATGGACAGGGCAGCCTCATCCAGAATCTCGGCCTGGTGGGCGTCG
GTCACTCGCTGCCTTCATCCCGCATCACGGAAATCAAGCTGCACCAGAAT
ATGTTCATGTTCCCGGGCAAGCTGGACATGAAGCTCATCTTCTTCGATGC
ACG

BS01593.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7771-PA 2067 sim-RA 1..887 17..903 4310 99.4 Plus
CG7771-PB 1995 sim-RB 1..815 89..903 3950 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
sim-RA 2825 CG7771-RA 101..987 17..903 4360 99.4 Plus
sim-RB 3162 CG7771-RB 489..1324 68..903 4105 99.4 Plus
sim-RC 2882 CG7771-RC 210..1044 69..903 4100 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13072661..13072858 68..265 990 100 Plus
3R 32079331 3R 13075069..13075276 696..903 950 97.1 Plus
3R 32079331 3R 13074079..13074251 263..435 865 100 Plus
3R 32079331 3R 13074837..13075006 536..705 850 100 Plus
3R 32079331 3R 13074568..13074672 431..535 525 100 Plus
3R 32079331 3R 13072499..13072550 17..68 260 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:33:58 has no hits.

BS01593.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:26 Download gff for BS01593.5prime
Subject Subject Range Query Range Percent Splice Strand
sim-PA 1..887 17..903 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:21:21 Download gff for BS01593.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7771-PA 1..887 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:28:47 Download gff for BS01593.5prime
Subject Subject Range Query Range Percent Splice Strand
sim-RA 101..987 17..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:14:51 Download gff for BS01593.5prime
Subject Subject Range Query Range Percent Splice Strand
sim-RA 101..987 17..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:14:51 Download gff for BS01593.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13072500..13072550 18..68 100 -> Plus
3R 13072662..13072856 69..263 100 -> Plus
3R 13074080..13074249 264..433 100 -> Plus
3R 13074571..13074672 434..535 100 -> Plus
3R 13074837..13075004 536..703 100 -> Plus
3R 13075077..13075276 704..903 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:28:47 Download gff for BS01593.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8898222..8898272 18..68 100 -> Plus
arm_3R 8898384..8898578 69..263 100 -> Plus
arm_3R 8899802..8899971 264..433 100 -> Plus
arm_3R 8900293..8900394 434..535 100 -> Plus
arm_3R 8900559..8900726 536..703 100 -> Plus
arm_3R 8900799..8900998 704..903 97   Plus

BS01593.complete Sequence

2101 bp assembled on 2009-02-12

> BS01593.complete
GAAGTTATCAGTCGACATGACTAACCATCGGCGAGTGCGCAAGGATTGCT
ATGAGAGCAGATTGCATGATATAGCCAAAACGTGTGCCATGAAGGAGAAA
AGCAAAAATGCGGCACGCACGCGACGTGAAAAGGAAAACACGGAATTCTG
TGAATTGGCCAAATTACTGCCGCTGCCGGCGGCGATTACTTCGCAACTGG
ACAAGGCCTCCGTCATCCGGCTGACCACGTCGTATTTGAAAATGCGCCAA
GTCTTTCCCGATGGTCTTGGCGAAGCCTGGGGCTCATCGCCTGCCATGCA
ACGCGGCGCCACCATCAAGGAGCTGGGCTCCCATCTGCTGCAGACGCTGG
ACGGATTCATCTTCGTGGTGGCTCCGGATGGCAAAATCATGTACATCTCG
GAAACGGCCTCCGTGCATTTGGGCCTCAGTCAGGTTGAGCTGACGGGCAA
CTCGATATTCGAGTACATACACAACTACGATCAGGACGAGATGAATGCCA
TTTTGTCGCTGCATCCGCACATCAACCAGCATCCACTCGCCCAGACGCAC
ACGCCCATCGGCAGTCCCAATGGCGTCCAGCATCCATCCGCCTACGACCA
CGATCGCGGATCGCACACCATCGAGATCGAGAAGACCTTCTTCCTGCGCA
TGAAGTGCGTCCTGGCCAAAAGGAACGCGGGCCTCACCACCTCCGGATTT
AAGGTGATACACTGCTCCGGCTATCTGAAGGCTCGCATCTATCCCGATCG
CGGGGATGGACAGGGCAGCCTCATCCAGAATCTCGGCCTGGTGGCCGTCG
GTCACTCGCTGCCTTCATCCGCCATCACGGAAATCAAGCTGCACCAGAAT
ATGTTCATGTTCCGGGCCAAGCTGGACATGAAGCTCATCTTCTTCGATGC
ACGCGTATCGCAGCTAACAGGATACGAGCCGCAGGACCTCATCGAGAAGA
CCCTGTATCAGTATATCCACGCCGCGGACATCATGGCCATGCGCTGCTCT
CATCAAATCCTGCTGTACAAAGGACAAGTGACCACCAAGTACTACCGCTT
CCTCACCAAAGGCGGCGGCTGGGTGTGGGTGCAGTCGTACGCGACACTGG
TGCACAATTCGCGATCCTCGCGAGAAGTGTTCATCGTGAGCGTGAACTAT
GTGCTGAGCGAACGAGAGGTGAAAGACTTGGTGCTGAACGAGATTCAGAC
GGGCGTTGTGAAGCGGGAGCCCATATCGCCGGCGGCTCAAGCGGCACAGG
CAGCTCAAGCGGCCCAAGCGGCCCAAGCGGCACAGGCGGCACAGGCGGCA
CATGTGGCTCAAGCGGTGCAGGCCCAGGTGGTGGTGGTGCCCCAGCAGTC
GGTGGTGGTGCAGCCGCAGTGCGCCGGAGCAACGGGTCAGCCGGTGGGTC
CGGGTACGCCAGTTAGTCTGGCCCTCAGTGCAAGTCCCAAGCTGGATCCG
TATTTCGAGCCAGAGCTGCCGCTGCAGCCGGCCGTAACGCCCGTGCCCCC
AACGAATAATAGTAGTAGTAGTAGCAACAATAACAACGGCGTGTGGCACC
ACCATCATGTGCAACAGCAGCAGCAGTCCGGCAGCATGGATCACGATAGC
CTGAGTTACACGCAGCTTTATCCGCCCTTGAACGACCTGGTGGTGAGCTC
GAGCAGCAGTGTGGGCGGTGGCACCGCCTCAAGTGCGGGCGGTGGATCCA
GTGCGTCGGCCTCGTCCTCCGGCGTTTACTCCACGGAGATGCAGTATCCG
GACACGACCACCGGCAACCTGTACTACAATAACAACAATCACTATTACTA
TGACTACGATGCGACGGTGGATGTGGCCACCTCGATGATACGCCCATTCT
CGGCCAATTCGAATAGCTGCTCGAGCAGTTCGGAGAGCGAAAGGCAGCTG
TCCACCGGAAATGCCTCGATTGTGAACGAAACATCGCCCTCACAGACGAC
CTACAGCGATCTGAGTCACAACTTCGAGCTGAGCTACTTCTCCGACAACA
GTTCGCAACAGCATCAGCATCAGCAGCAGCAGCAGCATCTGATGGAGCAG
CAGCATCTGCAATACCAATACGCCACCTGGTGACGAAGCTTTCTAGACCA
T

BS01593.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
sim-RA 2067 CG7771-PA 1..2067 17..2083 10335 100 Plus
sim-RC 2028 CG7771-PC 14..2028 69..2083 10075 100 Plus
sim-RB 1995 CG7771-PB 1..1995 89..2083 9975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
sim-RA 2825 CG7771-RA 101..2167 17..2083 10335 100 Plus
sim-RB 3162 CG7771-RB 489..2504 68..2083 10080 100 Plus
sim-RC 2882 CG7771-RC 210..2224 69..2083 10075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13076394..13077466 1011..2083 5365 100 Plus
3R 32079331 3R 13075069..13075276 696..903 1025 99.5 Plus
3R 32079331 3R 13072661..13072858 68..265 990 100 Plus
3R 32079331 3R 13074079..13074251 263..435 865 100 Plus
3R 32079331 3R 13074837..13075006 536..705 850 100 Plus
3R 32079331 3R 13076198..13076305 903..1010 540 100 Plus
3R 32079331 3R 13074568..13074672 431..535 525 100 Plus
3R 32079331 3R 13072499..13072550 17..68 260 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:37:32 has no hits.

BS01593.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:40 Download gff for BS01593.complete
Subject Subject Range Query Range Percent Splice Strand
sim-RA 98..2164 17..2085 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:32 Download gff for BS01593.complete
Subject Subject Range Query Range Percent Splice Strand
sim-RA 101..2167 17..2085 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:52 Download gff for BS01593.complete
Subject Subject Range Query Range Percent Splice Strand
sim-RA 101..2167 17..2085 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:52 Download gff for BS01593.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13072499..13072550 17..68 100 -> Plus
3R 13072662..13072856 69..263 100 -> Plus
3R 13074080..13074249 264..433 100 -> Plus
3R 13074571..13074672 434..535 100 -> Plus
3R 13074837..13075004 536..703 100 -> Plus
3R 13075077..13075276 704..903 100 -> Plus
3R 13076199..13076305 904..1010 100 -> Plus
3R 13076394..13077466 1011..2085 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:32 Download gff for BS01593.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8900799..8900998 704..903 100 -> Plus
arm_3R 8901921..8902027 904..1010 100 -> Plus
arm_3R 8898221..8898272 17..68 100 -> Plus
arm_3R 8898384..8898578 69..263 100 -> Plus
arm_3R 8899802..8899971 264..433 100 -> Plus
arm_3R 8900293..8900394 434..535 100 -> Plus
arm_3R 8900559..8900726 536..703 100 -> Plus
arm_3R 8902116..8903188 1011..2085 99   Plus

BS01593.pep Sequence

Translation from 16 to 2082

> BS01593.pep
MTNHRRVRKDCYESRLHDIAKTCAMKEKSKNAARTRREKENTEFCELAKL
LPLPAAITSQLDKASVIRLTTSYLKMRQVFPDGLGEAWGSSPAMQRGATI
KELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSIFEY
IHNYDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRGSH
TIEIEKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYPDRGDGQG
SLIQNLGLVAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQL
TGYEPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYRFLTKGG
GWVWVQSYATLVHNSRSSREVFIVSVNYVLSEREVKDLVLNEIQTGVVKR
EPISPAAQAAQAAQAAQAAQAAQAAQAAHVAQAVQAQVVVVPQQSVVVQP
QCAGATGQPVGPGTPVSLALSASPKLDPYFEPELPLQPAVTPVPPTNNSS
SSSNNNNGVWHHHHVQQQQQSGSMDHDSLSYTQLYPPLNDLVVSSSSSVG
GGTASSAGGGSSASASSSGVYSTEMQYPDTTTGNLYYNNNNHYYYDYDAT
VDVATSMIRPFSANSNSCSSSSESERQLSTGNASIVNETSPSQTTYSDLS
HNFELSYFSDNSSQQHQHQQQQQHLMEQQHLQYQYATW*

BS01593.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
sim-PA 688 CG7771-PA 1..688 1..688 3570 100 Plus
sim-PC 675 CG7771-PC 5..675 18..688 3469 99.9 Plus
sim-PB 664 CG7771-PB 1..664 25..688 3437 100 Plus
sim-PD 672 CG7771-PD 1..672 25..688 3418 98.8 Plus
trh-PG 923 CG42865-PG 88..481 26..391 671 41 Plus