Clone Sequence Records
BS01593.3prime Sequence
888 bp (761 high quality bases) assembled on 2005-11-29
> BS01593.3prime
ATGGTCTAGAAAGCTTCGTCACCAGGTGGCGTATTGGTATTGCAGATGCT
GCTGCTCCATCAGATGCTGCTGCTGCTGCTGATGCTGATGCTGTTGCGAA
CTGTTGTCGGAGAAGTAGCTCAGCTCGAAGTTGTGACTCAGATCGCTGTA
GGTCGTCTGTGAGGGCGATGTTTCGTTCACAATCGAGGCATTTCCGGTGG
ACAGCTGCCTTTCGCTCTCCGAACTGCTCGAGCAGCTATTCGAATTGGCC
GAGAATGGGCGTATCATCGAGGTGGCCACATCCACCGTCGCATCGTAGTC
ATAGTAATAGTGATTGTTGTTATTGTAGTACAGGTTGCCGGTGGTCGTGT
CCGGATACTGCATCTCCGTGGAGTAAACGCCGGAGGACGAGGCCGACGCA
CTGGATCCACCGCCCGCACTTGAGGCGGTGCCACCGCCCACACTGCTGCT
CGAGCTCACCACCAGGTCGTTCAAGGGCGGATAAAGCTGCGTGTAACTCA
GGCTATCGTGATCCATGCTGCCGGACTGCTGCTGCTGTTGCACATGATGG
TGGTGCCACACGCCGTTGTTATTGTTGCTACTACTACTACTATTATTCGT
TGGGGGCACGGGCGTTACGGCCGGCTGCAGCGGCAGCTCTGGCTCGAAAT
ACGGATCCAGCTTGGGACTTGCACTGAGGGCCAGACTAACTGGCGTACCC
GGACCCACCGGCTGACCCGTTGCTCCGGCGCACTGCGGCTGCACCACCAC
CGACTGCTGGGGCACCACCACCACCTGGGCCTGCACCGCTTGAGCCACAT
GTGCCGCCTGTGCCGCCTGTGCCGCTTGGGCCGCTTGGGCCGCTTGAGCT
GCCTGTGCCGCTTGAGCCGCCGGCGATATGGGCTCCCG
BS01593.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7771-PA | 2067 | sim-RA | 1198..2067 | 888..19 | 4350 | 100 | Minus |
CG7771-PB | 1995 | sim-RB | 1126..1995 | 888..19 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:17:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sim-RD | 3186 | CG7771-RD | 1659..2528 | 888..19 | 4350 | 100 | Minus |
sim-RC | 2882 | CG7771-RC | 1355..2224 | 888..19 | 4350 | 100 | Minus |
sim-RB | 3162 | CG7771-RB | 1635..2504 | 888..19 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13076597..13077466 | 888..19 | 4350 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 17:17:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stalker | 7256 | Stalker STALKER 7256bp | 2758..2820 | 337..273 | 112 | 67.7 | Minus |
BS01593.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:25 Download gff for
BS01593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7771-PB | 1126..1995 | 19..888 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:21:20 Download gff for
BS01593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7771-PB | 1126..1995 | 19..888 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:08:59 Download gff for
BS01593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-RB | 1631..2500 | 19..888 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:50 Download gff for
BS01593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-RB | 1635..2504 | 19..888 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:50 Download gff for
BS01593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13076597..13077466 | 19..888 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:08:59 Download gff for
BS01593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8902319..8903188 | 19..888 | 100 | | Minus |
BS01593.5prime Sequence
903 bp (750 high quality bases) assembled on 2005-11-29
> BS01593.5prime
GAAGTTATCAGTCGACATGACTAACCATCGGCGAGTGCGCAAGGATTGCT
ATGAGAGCAGATTGCATGATATAGCCAAAACGTGTGCCATGAAGGAGAAA
AGCAAAAATGCGGCACGCACGCGACGTGAAAAGGAAAACACGGAATTCTG
TGAATTGGCCAAATTACTGCCGCTGCCGGCGGCGATTACTTCGCAACTGG
ACAAGGCCTCCGTCATCCGGCTGACCACGTCGTATTTGAAAATGCGCCAA
GTCTTTCCCGATGGTCTTGGCGAAGCCTGGGGCTCATCGCCTGCCATGCA
ACGCGGCGCCACCATCAAGGAGCTGGGCTCCCATCTGCTGCAGACGCTGG
ACGGATTCATCTTCGTGGTGGCTCCGGATGGCAAAATCATGTACATCTCG
GAAACGGCCTCCGTGCATTTGGGCCTCAGTCAGGTTGAGCTGACGGGCAA
CTCGATATTCGAGTACATACACAACTACGATCAGGACGAGATGAATGCCA
TTTTGTCGCTGCATCCGCACATCAACCAGCATCCACTCGCCCAGACGCAC
ACGCCCATCGGCAGTCCCAATGGCGTCCAGCATCCATCCGCCTACGACCA
CGATCGCGGATCGCACACCATCGAGATCGAGAAGACCTTCTTCCTGCGCA
TGAAGTGCGTCCTGGCCAAAAGGAACGCGGGCCTCACCACCTCCGGATTT
AAGGTGATACACTGCTCCGGCTATCTGAAGGCTCGCATCTATCCCGATCG
CGGGGATGGACAGGGCAGCCTCATCCAGAATCTCGGCCTGGTGGGCGTCG
GTCACTCGCTGCCTTCATCCCGCATCACGGAAATCAAGCTGCACCAGAAT
ATGTTCATGTTCCCGGGCAAGCTGGACATGAAGCTCATCTTCTTCGATGC
ACG
BS01593.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7771-PA | 2067 | sim-RA | 1..887 | 17..903 | 4310 | 99.4 | Plus |
CG7771-PB | 1995 | sim-RB | 1..815 | 89..903 | 3950 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:33:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sim-RA | 2825 | CG7771-RA | 101..987 | 17..903 | 4360 | 99.4 | Plus |
sim-RB | 3162 | CG7771-RB | 489..1324 | 68..903 | 4105 | 99.4 | Plus |
sim-RC | 2882 | CG7771-RC | 210..1044 | 69..903 | 4100 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:33:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13072661..13072858 | 68..265 | 990 | 100 | Plus |
3R | 32079331 | 3R | 13075069..13075276 | 696..903 | 950 | 97.1 | Plus |
3R | 32079331 | 3R | 13074079..13074251 | 263..435 | 865 | 100 | Plus |
3R | 32079331 | 3R | 13074837..13075006 | 536..705 | 850 | 100 | Plus |
3R | 32079331 | 3R | 13074568..13074672 | 431..535 | 525 | 100 | Plus |
3R | 32079331 | 3R | 13072499..13072550 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:33:58 has no hits.
BS01593.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:26 Download gff for
BS01593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:21:21 Download gff for
BS01593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7771-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:28:47 Download gff for
BS01593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-RA | 101..987 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:14:51 Download gff for
BS01593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-RA | 101..987 | 17..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:14:51 Download gff for
BS01593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13072500..13072550 | 18..68 | 100 | -> | Plus |
3R | 13072662..13072856 | 69..263 | 100 | -> | Plus |
3R | 13074080..13074249 | 264..433 | 100 | -> | Plus |
3R | 13074571..13074672 | 434..535 | 100 | -> | Plus |
3R | 13074837..13075004 | 536..703 | 100 | -> | Plus |
3R | 13075077..13075276 | 704..903 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:28:47 Download gff for
BS01593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8898222..8898272 | 18..68 | 100 | -> | Plus |
arm_3R | 8898384..8898578 | 69..263 | 100 | -> | Plus |
arm_3R | 8899802..8899971 | 264..433 | 100 | -> | Plus |
arm_3R | 8900293..8900394 | 434..535 | 100 | -> | Plus |
arm_3R | 8900559..8900726 | 536..703 | 100 | -> | Plus |
arm_3R | 8900799..8900998 | 704..903 | 97 | | Plus |
BS01593.complete Sequence
2101 bp assembled on 2009-02-12
> BS01593.complete
GAAGTTATCAGTCGACATGACTAACCATCGGCGAGTGCGCAAGGATTGCT
ATGAGAGCAGATTGCATGATATAGCCAAAACGTGTGCCATGAAGGAGAAA
AGCAAAAATGCGGCACGCACGCGACGTGAAAAGGAAAACACGGAATTCTG
TGAATTGGCCAAATTACTGCCGCTGCCGGCGGCGATTACTTCGCAACTGG
ACAAGGCCTCCGTCATCCGGCTGACCACGTCGTATTTGAAAATGCGCCAA
GTCTTTCCCGATGGTCTTGGCGAAGCCTGGGGCTCATCGCCTGCCATGCA
ACGCGGCGCCACCATCAAGGAGCTGGGCTCCCATCTGCTGCAGACGCTGG
ACGGATTCATCTTCGTGGTGGCTCCGGATGGCAAAATCATGTACATCTCG
GAAACGGCCTCCGTGCATTTGGGCCTCAGTCAGGTTGAGCTGACGGGCAA
CTCGATATTCGAGTACATACACAACTACGATCAGGACGAGATGAATGCCA
TTTTGTCGCTGCATCCGCACATCAACCAGCATCCACTCGCCCAGACGCAC
ACGCCCATCGGCAGTCCCAATGGCGTCCAGCATCCATCCGCCTACGACCA
CGATCGCGGATCGCACACCATCGAGATCGAGAAGACCTTCTTCCTGCGCA
TGAAGTGCGTCCTGGCCAAAAGGAACGCGGGCCTCACCACCTCCGGATTT
AAGGTGATACACTGCTCCGGCTATCTGAAGGCTCGCATCTATCCCGATCG
CGGGGATGGACAGGGCAGCCTCATCCAGAATCTCGGCCTGGTGGCCGTCG
GTCACTCGCTGCCTTCATCCGCCATCACGGAAATCAAGCTGCACCAGAAT
ATGTTCATGTTCCGGGCCAAGCTGGACATGAAGCTCATCTTCTTCGATGC
ACGCGTATCGCAGCTAACAGGATACGAGCCGCAGGACCTCATCGAGAAGA
CCCTGTATCAGTATATCCACGCCGCGGACATCATGGCCATGCGCTGCTCT
CATCAAATCCTGCTGTACAAAGGACAAGTGACCACCAAGTACTACCGCTT
CCTCACCAAAGGCGGCGGCTGGGTGTGGGTGCAGTCGTACGCGACACTGG
TGCACAATTCGCGATCCTCGCGAGAAGTGTTCATCGTGAGCGTGAACTAT
GTGCTGAGCGAACGAGAGGTGAAAGACTTGGTGCTGAACGAGATTCAGAC
GGGCGTTGTGAAGCGGGAGCCCATATCGCCGGCGGCTCAAGCGGCACAGG
CAGCTCAAGCGGCCCAAGCGGCCCAAGCGGCACAGGCGGCACAGGCGGCA
CATGTGGCTCAAGCGGTGCAGGCCCAGGTGGTGGTGGTGCCCCAGCAGTC
GGTGGTGGTGCAGCCGCAGTGCGCCGGAGCAACGGGTCAGCCGGTGGGTC
CGGGTACGCCAGTTAGTCTGGCCCTCAGTGCAAGTCCCAAGCTGGATCCG
TATTTCGAGCCAGAGCTGCCGCTGCAGCCGGCCGTAACGCCCGTGCCCCC
AACGAATAATAGTAGTAGTAGTAGCAACAATAACAACGGCGTGTGGCACC
ACCATCATGTGCAACAGCAGCAGCAGTCCGGCAGCATGGATCACGATAGC
CTGAGTTACACGCAGCTTTATCCGCCCTTGAACGACCTGGTGGTGAGCTC
GAGCAGCAGTGTGGGCGGTGGCACCGCCTCAAGTGCGGGCGGTGGATCCA
GTGCGTCGGCCTCGTCCTCCGGCGTTTACTCCACGGAGATGCAGTATCCG
GACACGACCACCGGCAACCTGTACTACAATAACAACAATCACTATTACTA
TGACTACGATGCGACGGTGGATGTGGCCACCTCGATGATACGCCCATTCT
CGGCCAATTCGAATAGCTGCTCGAGCAGTTCGGAGAGCGAAAGGCAGCTG
TCCACCGGAAATGCCTCGATTGTGAACGAAACATCGCCCTCACAGACGAC
CTACAGCGATCTGAGTCACAACTTCGAGCTGAGCTACTTCTCCGACAACA
GTTCGCAACAGCATCAGCATCAGCAGCAGCAGCAGCATCTGATGGAGCAG
CAGCATCTGCAATACCAATACGCCACCTGGTGACGAAGCTTTCTAGACCA
T
BS01593.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sim-RA | 2067 | CG7771-PA | 1..2067 | 17..2083 | 10335 | 100 | Plus |
sim-RC | 2028 | CG7771-PC | 14..2028 | 69..2083 | 10075 | 100 | Plus |
sim-RB | 1995 | CG7771-PB | 1..1995 | 89..2083 | 9975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sim-RA | 2825 | CG7771-RA | 101..2167 | 17..2083 | 10335 | 100 | Plus |
sim-RB | 3162 | CG7771-RB | 489..2504 | 68..2083 | 10080 | 100 | Plus |
sim-RC | 2882 | CG7771-RC | 210..2224 | 69..2083 | 10075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13076394..13077466 | 1011..2083 | 5365 | 100 | Plus |
3R | 32079331 | 3R | 13075069..13075276 | 696..903 | 1025 | 99.5 | Plus |
3R | 32079331 | 3R | 13072661..13072858 | 68..265 | 990 | 100 | Plus |
3R | 32079331 | 3R | 13074079..13074251 | 263..435 | 865 | 100 | Plus |
3R | 32079331 | 3R | 13074837..13075006 | 536..705 | 850 | 100 | Plus |
3R | 32079331 | 3R | 13076198..13076305 | 903..1010 | 540 | 100 | Plus |
3R | 32079331 | 3R | 13074568..13074672 | 431..535 | 525 | 100 | Plus |
3R | 32079331 | 3R | 13072499..13072550 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:37:32 has no hits.
BS01593.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:40 Download gff for
BS01593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-RA | 98..2164 | 17..2085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:32 Download gff for
BS01593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-RA | 101..2167 | 17..2085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:52 Download gff for
BS01593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sim-RA | 101..2167 | 17..2085 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:52 Download gff for
BS01593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13072499..13072550 | 17..68 | 100 | -> | Plus |
3R | 13072662..13072856 | 69..263 | 100 | -> | Plus |
3R | 13074080..13074249 | 264..433 | 100 | -> | Plus |
3R | 13074571..13074672 | 434..535 | 100 | -> | Plus |
3R | 13074837..13075004 | 536..703 | 100 | -> | Plus |
3R | 13075077..13075276 | 704..903 | 100 | -> | Plus |
3R | 13076199..13076305 | 904..1010 | 100 | -> | Plus |
3R | 13076394..13077466 | 1011..2085 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:32 Download gff for
BS01593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8900799..8900998 | 704..903 | 100 | -> | Plus |
arm_3R | 8901921..8902027 | 904..1010 | 100 | -> | Plus |
arm_3R | 8898221..8898272 | 17..68 | 100 | -> | Plus |
arm_3R | 8898384..8898578 | 69..263 | 100 | -> | Plus |
arm_3R | 8899802..8899971 | 264..433 | 100 | -> | Plus |
arm_3R | 8900293..8900394 | 434..535 | 100 | -> | Plus |
arm_3R | 8900559..8900726 | 536..703 | 100 | -> | Plus |
arm_3R | 8902116..8903188 | 1011..2085 | 99 | | Plus |
BS01593.pep Sequence
Translation from 16 to 2082
> BS01593.pep
MTNHRRVRKDCYESRLHDIAKTCAMKEKSKNAARTRREKENTEFCELAKL
LPLPAAITSQLDKASVIRLTTSYLKMRQVFPDGLGEAWGSSPAMQRGATI
KELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSIFEY
IHNYDQDEMNAILSLHPHINQHPLAQTHTPIGSPNGVQHPSAYDHDRGSH
TIEIEKTFFLRMKCVLAKRNAGLTTSGFKVIHCSGYLKARIYPDRGDGQG
SLIQNLGLVAVGHSLPSSAITEIKLHQNMFMFRAKLDMKLIFFDARVSQL
TGYEPQDLIEKTLYQYIHAADIMAMRCSHQILLYKGQVTTKYYRFLTKGG
GWVWVQSYATLVHNSRSSREVFIVSVNYVLSEREVKDLVLNEIQTGVVKR
EPISPAAQAAQAAQAAQAAQAAQAAQAAHVAQAVQAQVVVVPQQSVVVQP
QCAGATGQPVGPGTPVSLALSASPKLDPYFEPELPLQPAVTPVPPTNNSS
SSSNNNNGVWHHHHVQQQQQSGSMDHDSLSYTQLYPPLNDLVVSSSSSVG
GGTASSAGGGSSASASSSGVYSTEMQYPDTTTGNLYYNNNNHYYYDYDAT
VDVATSMIRPFSANSNSCSSSSESERQLSTGNASIVNETSPSQTTYSDLS
HNFELSYFSDNSSQQHQHQQQQQHLMEQQHLQYQYATW*
BS01593.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sim-PA | 688 | CG7771-PA | 1..688 | 1..688 | 3570 | 100 | Plus |
sim-PC | 675 | CG7771-PC | 5..675 | 18..688 | 3469 | 99.9 | Plus |
sim-PB | 664 | CG7771-PB | 1..664 | 25..688 | 3437 | 100 | Plus |
sim-PD | 672 | CG7771-PD | 1..672 | 25..688 | 3418 | 98.8 | Plus |
trh-PG | 923 | CG42865-PG | 88..481 | 26..391 | 671 | 41 | Plus |