Clone Sequence Records
BS01596.3prime Sequence
901 bp (835 high quality bases) assembled on 2005-11-29
> BS01596.3prime
ATGGTCTAGAAAGCTTCGTCAGAAGGCCAACCAAGGATGGTGCAATAGTG
ACTCCTTCGATCGGTCCCCGTAGTCATAGGTCAGTTCCTCGCCCGGCTCG
ATGTCGTCCTTGGCCAGGAGTACGAGATGCGGCCGCTGTTTGATAAGTAC
TACTTTGGTCATTAGGTTACCAGCCCGCGAGTGATTGATGAGGCGCCCCA
GCTTGCCGGTGTCAACGGTTGCATCGATGCAGTACTGCTGGGACTTGTGC
TTGAAGTAGTACATATAGCACCCAGCATTCTCGTCCAACGCATAGCGTTT
CTCCCGTTCCGCGGCTTCGCCTATAGATATGAGATCTCCCACATACTCAA
CCACAAATTCGTTGCGTTTAAAGGGCCGATCGGCGACTACGCCTCTTCCC
TTGCCCATAAAGTGGCGTACTTGGAGACCATCGCAGCGCTCTTCCAGCAC
TGCTTGCTCCAAGCCTCGCATCCATTCCTCCTTGACGGCCGTCTTAGTCT
TGCGCACACTCCTTCGCACCGGGAAGAAGTCCGTCATCTCACGATTGCCG
TTGGTGGCAGCCAAGGGCAGCGGCGGTTGTCCCTTCGTTGGCCCCTTGCT
TTTGGTCTTTGATTTCACGGGCGCAGGCTTGAGCATCGTTTTCATGCCTG
CTTTGTTGCTGTTCGCTGTGGCTGGTGCTTTGTTCTGGTTTTCACGCTCC
TCGGCAGCCTTGATCAGGGCTCGAACGTCGTCCTCGTCATCTCCTTCATC
ATCGTCGTCGTCTAGCACCACGACGATATCATCCTGCTGCTGCTGCTGCT
GTTGTGACGGTGGTTTCTGTAGCTGTGGCTGGTAAGGCGCTTGTGGCTTT
GGCTGGTTCAGTCTTCGACGCGACTTGCAGGCTGCCACCGCTGCTGTTGT
G
BS01596.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3307-PC | 2076 | pr-set7-RC | 1194..2076 | 901..19 | 4415 | 100 | Minus |
| CG3307-PA | 2076 | pr-set7-RA | 1194..2076 | 901..19 | 4415 | 100 | Minus |
| CG3307-PB | 2076 | pr-set7-RB | 1194..2076 | 901..19 | 4415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:37:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pr-set7-RD | 3175 | CG3307-RD | 1359..2246 | 901..14 | 4425 | 99.9 | Minus |
| pr-set7-RB | 4183 | CG3307-RB | 1565..2452 | 901..14 | 4425 | 99.9 | Minus |
| pr-set7-RA | 3311 | CG3307-RA | 1495..2382 | 901..14 | 4425 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14317876..14318763 | 901..14 | 4425 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-10 19:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmau\mariner | 1286 | Dmau\mariner DMMAR 1286bp Derived from M14653 (Rel. 63, Last updated, Version 2). | 368..434 | 693..627 | 119 | 64.2 | Minus |
BS01596.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:29 Download gff for
BS01596.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3307-PB | 1194..2076 | 19..901 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:21:23 Download gff for
BS01596.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3307-PB | 1194..2076 | 19..901 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:27:45 Download gff for
BS01596.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RA | 1490..2383 | 8..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:27 Download gff for
BS01596.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RA | 1495..2388 | 8..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:27 Download gff for
BS01596.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14317876..14318769 | 8..901 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:27:45 Download gff for
BS01596.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10143598..10144491 | 8..901 | 99 | | Minus |
BS01596.5prime Sequence
887 bp (665 high quality bases) assembled on 2005-11-29
> BS01596.5prime
GAAGTTATCAGTCGACATGATAATGGTGCGAAGACGACAACGGCCCGCCA
AGGAAGCCGCATCCTCATCCTCTGGTGGAGCTTCCTCGGGATCGGGAATT
CCTGTTGACCAGGCACTGCCACTGAATGTGGCGGGAAATCTGCTGGAGGA
TCAGTATTTTGCCAGCCCCAAGCGGAAAGACTGCCGTTTGATGAAGGTCA
CTCAAAATGGCCAACTGCCGGAAGCCACAATGATGGCACACAACAAAGAC
AACAAAGCGGGTCGCACAATAGGAGTTCCCTTGGCCACGCGCTCACAAAC
TCGCACCATTGAGAACTTCTTCAAAGCCAATGCTGCCGCTAAGGATTCCC
AAAAGACAATACACACAGAGGAGCAGTTGAATCTAGGAAATCAGGAACTG
AAACTGGACGATGAGGAGCTAAATGGACAGATAAAACTAGATGACGAGGT
GCTAAAGCTGGCAGACAAGCAGATAAATGAAAACCTTCCCTTTGCCGACG
AAGTAGATGCCAAGGCAGAACAAAAGCTTATGGATGAGGAACTGCAGCAG
GTGGTGGAGGAACTTCTGTTCGATGGCAGTTCCAGAGCGTCCTCCAATTC
GCCCTTTTATCAGCATGATATGGATGTCATGCAGGAGATCCAGCAGACTC
CAGAAATTCCACACATCAAAAAGGTCACAGAGCCGCTCGAGGGACTGGGC
TCTCTGGCCGACTTCCAGACACATCGCTCTGCGCTGAGGGACAGCCACAG
TTCCACGCACAGCAGCAGCACCGACAACATCTTCCTGCAGGAGCCGGTAC
TGACCCTGGACATTGATCGCACGCCCCACAAAGCCTCCAGCATAAAGATC
AATCGGAGCTTCGAACTGGCCGGAGCCGTATTCTCAT
BS01596.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3307-PC | 2076 | pr-set7-RC | 1..871 | 17..887 | 4305 | 99.7 | Plus |
| CG3307-PA | 2076 | pr-set7-RA | 1..871 | 17..887 | 4305 | 99.7 | Plus |
| CG3307-PB | 2076 | pr-set7-RB | 1..871 | 17..887 | 4305 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:19:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pr-set7-RD | 3175 | CG3307-RD | 166..1036 | 17..887 | 4325 | 99.8 | Plus |
| pr-set7-RB | 4183 | CG3307-RB | 372..1242 | 17..887 | 4325 | 99.8 | Plus |
| pr-set7-RA | 3311 | CG3307-RA | 302..1172 | 17..887 | 4325 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:19:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14316937..14317553 | 271..887 | 3055 | 99.7 | Plus |
| 3R | 32079331 | 3R | 14316612..14316868 | 17..273 | 1285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:19:20 has no hits.
BS01596.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:30 Download gff for
BS01596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3307-PB | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:21:25 Download gff for
BS01596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3307-PB | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:09:51 Download gff for
BS01596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RA | 289..1167 | 9..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:50:59 Download gff for
BS01596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RA | 294..1172 | 9..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:50:59 Download gff for
BS01596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14316604..14316867 | 9..272 | 98 | -> | Plus |
| 3R | 14316939..14317553 | 273..887 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:09:51 Download gff for
BS01596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10142326..10142589 | 9..272 | 98 | -> | Plus |
| arm_3R | 10142661..10143275 | 273..887 | 99 | | Plus |
BS01596.complete Sequence
2110 bp (2110 high quality bases) assembled on 2006-03-24
GenBank Submission: FJ634653
> BS01596.complete
GAAGTTATCAGTCGACATGATAATGGTGCGAAGACGACAACGGCCCGCCA
AGGAAGCCGCATCCTCATCCTCTGGTGGAGCTTCCTCGGGATCGGGAATT
CCTGTTGACCAGGCACTGCCACTGAATGTGGCGGGAAATCTGCTGGAGGA
TCAGTATTTTGCCAGCCCCAAGCGGAAAGACTGCCGTTTGATGAAGGTCA
CTCAAAATGGCCAACTGCCGGAAGCCACAATGATGGCACACAACAAAGAC
AACAAAGCGGGTCGCACAATAGGAGTTCCCTTGGCCACGCGCTCACAAAC
TCGCACCATTGAGAACTTCTTCAAAGCCAATGCTGCCGCTAAGGATTCCC
AAAAGACAATACACACAGAGGAGCAGTTGAATCTAGGAAATCAGGAACTG
AAACTGGACGATGAGGAGCTAAATGGACAGATAAAACTAGATGACGAGGT
GCTAAAGCTGGCAGACAAGCAGATAAATGAAAACCTTCCCTTTGCCGACG
AAGTAGATGCCAAGGCAGAACAAAAGCTTATGGATGAGGAACTGCAGCAG
GTGGTGGAGGAACTTCTGTTCGATGGCAGTTCCAGAGCGTCCTCCAATTC
GCCCTTTTATCAGCATGATATGGATGTCATGCAGGAGATCCAGCAGACTC
CAGAAATTCCACACATCAAAAAGGTCACAGAGCCGCTCGAGGGACTGGGC
TCTCTGGCCGACTTCCAGACACATCGCTCTGCGCTGAGGGACAGCCACAG
TTCCACGCACAGCAGCAGCACCGACAACATCTTCCTGCAGGAGCCGGTAC
TGACCCTGGACATTGATCGCACGCCCACCAAAGCCTCCAGCATAAAGATC
AATCGGAGCTTCGAACTGGCCGGAGCCGTATTCTCATCACCTCCGTCGGT
GCTAAACGCCTGTCTCAATGGACGCTTCAATCAAATAGTAAGCCTGAATG
GACAAAAGGAGGCGCTGGACTTGCCGCACTTCGATTTGGATCAACATGAC
AGTAGTTCTTGCGACAGCGGAGTAGCCTGTGGTCTCACTGCCAATACAGA
ATCGCCAGCGGGGCAACCCCGACGCAGAAAACCAGCCACACCGCATCGCA
TCCTCTGCCCCTCGCCAATCAAAACGGCTTTGAAGGTAACTGGAGGGATT
TGCAAGGTCGGATCTGCGGATCCATTGTCGCCGCGCAAGTCTCCTCGAAA
ACTGCCGACCACAACAGCAGCGGTGGCAGCCTGCAAGTCGCGTCGAAGAC
TGAACCAGCCAAAGCCACAAGCGCCTTACCAGCCACAGCTACAGAAACCA
CCGTCACAACAGCAGCAGCAGCAGCAGGATGATATCGTCGTGGTGCTAGA
CGACGACGATGATGAAGGAGATGACGAGGACGACGTTCGAGCCCTGATCA
AGGCTGCCGAGGAGCGTGAAAACCAGAACAAAGCACCAGCCACAGCGAAC
AGCAACAAAGCAGGCATGAAAACGATGCTCAAGCCTGCGCCCGTGAAATC
AAAGACCAAAAGCAAGGGGCCAACGAAGGGACAACCGCCGCTGCCCTTGG
CTGCCACCAACGGCAATCGTGAGATGACGGACTTCTTCCCGGTGCGAAGG
AGTGTGCGCAAGACTAAGACGGCCGTCAAGGAGGAATGGATGCGAGGCTT
GGAGCAAGCAGTGCTGGAAGAGCGCTGCGATGGTCTCCAAGTACGCCACT
TTATGGGCAAGGGAAGAGGCGTAGTCGCCGATCGGCCCTTTAAACGCAAC
GAATTTGTGGTTGAGTATGTGGGAGATCTCATATCTATAGGCGAAGCCGC
GGAACGGGAGAAACGCTATGCGTTGGACGAGAATGCTGGGTGCTATATGT
ACTACTTCAAGCACAAGTCCCAGCAGTACTGCATCGATGCAACCGTTGAC
ACCGGCAAGCTGGGGCGCCTCATCAATCACTCGCGGGCTGGTAACCTAAT
GACCAAAGTAGTACTTATCAAACAGCGGCCGCATCTCGTACTCCTGGCCA
AGGACGACATCGAGCCGGGCGAGGAACTGACCTATGACTACGGGGACCGA
TCGAAGGAGTCACTATTGCACCATCCTTGGTTGGCCTTCTGACGAAGCTT
TCTAGACCAT
BS01596.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pr-set7-RD | 2076 | CG3307-PD | 1..2076 | 17..2092 | 10380 | 100 | Plus |
| pr-set7-RB | 2076 | CG3307-PB | 1..2076 | 17..2092 | 10380 | 100 | Plus |
| pr-set7-RA | 2076 | CG3307-PA | 1..2076 | 17..2092 | 10380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pr-set7-RD | 3175 | CG3307-RD | 166..2246 | 17..2097 | 10390 | 100 | Plus |
| pr-set7-RB | 4183 | CG3307-RB | 372..2452 | 17..2097 | 10390 | 100 | Plus |
| pr-set7-RA | 3311 | CG3307-RA | 302..2382 | 17..2097 | 10390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:58:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14316937..14318763 | 271..2097 | 9120 | 99.9 | Plus |
| 3R | 32079331 | 3R | 14316612..14316868 | 17..273 | 1285 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 12:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmau\mariner | 1286 | Dmau\mariner DMMAR 1286bp Derived from M14653 (Rel. 63, Last updated, Version 2). | 368..434 | 1418..1484 | 119 | 64.2 | Plus |
BS01596.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:37:59 Download gff for
BS01596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RB | 1..2076 | 17..2092 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:31 Download gff for
BS01596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RB | 359..2453 | 9..2103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:34 Download gff for
BS01596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RA | 297..2373 | 17..2094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:37:59 Download gff for
BS01596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RB | 359..2453 | 9..2103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:34 Download gff for
BS01596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-set7-RA | 302..2378 | 17..2094 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:34 Download gff for
BS01596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14316612..14316867 | 17..272 | 100 | -> | Plus |
| 3R | 14316939..14318759 | 273..2094 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:34 Download gff for
BS01596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10142334..10142589 | 17..272 | 100 | -> | Plus |
| arm_3R | 10142661..10144481 | 273..2094 | 99 | | Plus |
BS01596.pep Sequence
Translation from 16 to 2091
> BS01596.pep
MIMVRRRQRPAKEAASSSSGGASSGSGIPVDQALPLNVAGNLLEDQYFAS
PKRKDCRLMKVTQNGQLPEATMMAHNKDNKAGRTIGVPLATRSQTRTIEN
FFKANAAAKDSQKTIHTEEQLNLGNQELKLDDEELNGQIKLDDEVLKLAD
KQINENLPFADEVDAKAEQKLMDEELQQVVEELLFDGSSRASSNSPFYQH
DMDVMQEIQQTPEIPHIKKVTEPLEGLGSLADFQTHRSALRDSHSSTHSS
STDNIFLQEPVLTLDIDRTPTKASSIKINRSFELAGAVFSSPPSVLNACL
NGRFNQIVSLNGQKEALDLPHFDLDQHDSSSCDSGVACGLTANTESPAGQ
PRRRKPATPHRILCPSPIKTALKVTGGICKVGSADPLSPRKSPRKLPTTT
AAVAACKSRRRLNQPKPQAPYQPQLQKPPSQQQQQQQDDIVVVLDDDDDE
GDDEDDVRALIKAAEERENQNKAPATANSNKAGMKTMLKPAPVKSKTKSK
GPTKGQPPLPLAATNGNREMTDFFPVRRSVRKTKTAVKEEWMRGLEQAVL
EERCDGLQVRHFMGKGRGVVADRPFKRNEFVVEYVGDLISIGEAAEREKR
YALDENAGCYMYYFKHKSQQYCIDATVDTGKLGRLINHSRAGNLMTKVVL
IKQRPHLVLLAKDDIEPGEELTYDYGDRSKESLLHHPWLAF*
BS01596.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:35:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pr-set7-PD | 691 | CG3307-PD | 1..691 | 1..691 | 3569 | 100 | Plus |
| pr-set7-PB | 691 | CG3307-PB | 1..691 | 1..691 | 3569 | 100 | Plus |
| pr-set7-PA | 691 | CG3307-PA | 1..691 | 1..691 | 3569 | 100 | Plus |
| trr-PC | 2410 | CG3848-PC | 2280..2385 | 565..675 | 168 | 35.1 | Plus |
| trr-PD | 2431 | CG3848-PD | 2301..2406 | 565..675 | 168 | 35.1 | Plus |
