Clone Sequence Records
BS01601.3prime Sequence
934 bp (895 high quality bases) assembled on 2005-11-30
> BS01601.3prime
ATGGTCTAGAAAGCTTCGCTAGTAACCAGTCTCTGGCTCCTGTTTAAGTG
TCATGCGACAGGGTTCCGTTCCATAACCAGCGGGTGCGGTTAGCATCTCG
GGAGCCCGGATCTTCAGTGGAGTTCGTCGCAGCAGCTCCTCGGCACTGCT
ACCCTCGCTCCGGTTGTACTCGTTGAGCGTAATATCGGCAGGATTGCGCA
GACCCAATCCGCCGCCCCCGCTGGACACTTCGACCGGCGAGGCGACTGCT
CTTTGGTAGGGATGCATCCTCTGGGGACTGTGCTGTGTTGGCAGCGGTCC
GGACCGACTGCCATTGTAGTGCTTGACGGGCATGTCCAAGTAGGAGCTCT
CCTGTTGTTGCTGATGCGTCGCATGTTGCTGATGTTGATGTTGTGACTTG
GGGCTGTTGAGCGGAGGAGAGATCGAGGCTGGAGCAACGGATGCGGGTGC
AGAGGAGGAGGACGAGACGGCTGCAGCGGCTGCCGCTGCAGTGCTGGCCG
CGTAGGCCCGGAAGGAATCATCCGCACTGTTCGCCTCGATAAGAGCCTGA
ATGTGCTGCACCTCCAGGTCCAGACTATGCGAGCCAGGACCACCGGACGT
GGCCAGCGAGTCCAGAGAGGAGTTAACTTGATTACCGCCCTCCATGTTGC
CTGTGTGGGTGGGACTCTGGTAGTCATTTGACTGATTGGGCGGCGATAGC
GGCAGAGGATTGTCGGCCAACTCTCCTCCCAACAACATTTCCTGCAGTAA
TGAATCAATGTGGGCCACTCCAAAGATCTTGGCAAACTGGATCTGCTCGA
TCATCTGCCAGGTAATAGACTGCAGAACCGGCAGGATGAGCAGAATCTCG
CCAAAGCGACCGCGCGACTCGTATTGCCGATCTGATATGTAGTCCTCGAG
ATTATTGAGTATCTGATGCCGTAGCGATTTGATG
BS01601.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9310-PA | 2115 | Hnf4-RA | 1200..2115 | 934..19 | 4580 | 100 | Minus |
CG9310-PB | 2199 | Hnf4-RB | 1284..2199 | 934..19 | 4580 | 100 | Minus |
CG9310-PC | 2001 | Hnf4-RC | 1086..2001 | 934..19 | 4580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hnf4-RE | 3876 | CG9310-RE | 2409..3324 | 934..19 | 4580 | 100 | Minus |
Hnf4-RF | 2791 | CG9310-RF | 1351..2266 | 934..19 | 4580 | 100 | Minus |
Hnf4-RD | 3600 | CG9310-RD | 2160..3075 | 934..19 | 4580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8687889..8688550 | 66..727 | 3310 | 100 | Plus |
2L | 23513712 | 2L | 8688620..8688829 | 725..934 | 1050 | 100 | Plus |
2L | 23513712 | 2L | 8687778..8687825 | 19..66 | 240 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 23:19:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2456 | 452..308 | 153 | 61.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6802 | 409..349 | 140 | 74.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6860 | 409..340 | 135 | 71.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2390 | 409..349 | 131 | 70.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6781 | 409..349 | 131 | 72.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6891 | 496..353 | 121 | 56.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6708..6802 | 400..308 | 118 | 61.1 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1100..1152 | 409..353 | 113 | 74.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1576 | 406..350 | 110 | 70 | Minus |
BS01601.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:31 Download gff for
BS01601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hnf4-PA | 1200..2115 | 19..934 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:21:27 Download gff for
BS01601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9310-PC | 1086..2001 | 19..934 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:40:06 Download gff for
BS01601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hnf4-RB | 1299..2217 | 14..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:32:46 Download gff for
BS01601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hnf4-RD | 2160..3078 | 14..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:32:46 Download gff for
BS01601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8688621..8688829 | 726..934 | 100 | | Plus |
2L | 8687775..8687824 | 14..65 | 96 | <- | Plus |
2L | 8687889..8688548 | 66..725 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:40:06 Download gff for
BS01601.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8687775..8687824 | 14..65 | 96 | <- | Plus |
arm_2L | 8687889..8688548 | 66..725 | 100 | <- | Plus |
arm_2L | 8688621..8688829 | 726..934 | 100 | | Plus |
BS01601.5prime Sequence
876 bp (809 high quality bases) assembled on 2005-11-30
> BS01601.5prime
GAAGTTATCAGTCGACATGATGAAGCATCCGCAGGATCTGAGTGTCACGG
ATGACCAGCAGTTAATGAAGGTGAACAAGGTGGAGAAGATGGAGCAGGAG
TTGCACGACCCCGAATCGGAGAGCCACATAATGCACGCGGATGCCCTGGC
CTCTGCCTATCCGGCTGCCTCGCAGCCCCACAGTCCGATCGGCCTCGCCC
TCAGCCCCAATGGCGGTGGGCTGGGACTGAGCAACAGTAGCAACCAGAGC
AGCGAGAACTTTGCGCTCTGCAACGGAAACGGAAATGCGGGCAGCGCAGG
AGGCGGAAGTGCCAGCAGTGGCAGCAACAACAACAACAGCATGTTCTCAC
CCAACAACAACTTGAGCGGAAGCGGAAGTGGGACTAACAGCAGTCAGCAG
CAATTGCAGCAGCAACAACAACAGCAATCACCGACGGTCTGCGCCATTTG
TGGAGATCGGGCGACGGGCAAACATTATGGAGCCTCCAGCTGCGACGGCT
GCAAAGGATTCTTCAGGAGGAGTGTCAGGAAAAATCATCAGTACACTTGC
AGATTTGCGCGAAACTGCGTTGTGGACAAGGACAAACGGAATCAGTGCCG
CTACTGCCGGCTGAGGAAGTGCTTCAAGGCGGGCATGAAGAAGGAGGCGG
TGCAAAACGAGCGGGATCGCATTAGCTGCCGCCGCACCTCCAATGACGAC
CCGGATCCGGGCAATGGGCTGTCTGTGATTTCCTTGGTTAAGGCGGAGAA
TGAGTCGCGTCAGTCGAAGGCAGGCGCTGCCATGGAGCCAAACATTAACG
AGGACCTCTCCNNACAGCAGTTCGCGAGCATTCACGATGTCTGCGAGTCG
ATGAAGCAGCAGCTGCTGACCCTGGT
BS01601.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9310-PA | 2115 | Hnf4-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
CG9310-PB | 2199 | Hnf4-RB | 180..879 | 112..811 | 3500 | 100 | Plus |
CG9310-PC | 2001 | Hnf4-RC | 1..681 | 131..811 | 3405 | 100 | Plus |
CG9310-PA | 2115 | Hnf4-RA | 800..860 | 816..876 | 255 | 96.7 | Plus |
CG9310-PB | 2199 | Hnf4-RB | 884..944 | 816..876 | 255 | 96.7 | Plus |
CG9310-PC | 2001 | Hnf4-RC | 686..746 | 816..876 | 255 | 96.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:26:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hnf4-RE | 3876 | CG9310-RE | 1209..2069 | 16..876 | 4219 | 99.4 | Plus |
Hnf4-RA | 3307 | CG9310-RA | 640..1500 | 16..876 | 4219 | 99.4 | Plus |
Hnf4-RB | 2739 | CG9310-RB | 195..959 | 112..876 | 3739 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8689814..8690253 | 552..113 | 2200 | 100 | Minus |
2L | 23513712 | 2L | 8689302..8689629 | 876..549 | 1558 | 98.2 | Minus |
2L | 23513712 | 2L | 8704361..8704458 | 113..16 | 490 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 15:26:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6898 | 268..433 | 232 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2432 | 298..427 | 224 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2411 | 302..433 | 220 | 70.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6852 | 313..426 | 215 | 66.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6923 | 230..422 | 204 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2526 | 230..435 | 202 | 59.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2478 | 268..425 | 197 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2962 | 230..426 | 185 | 59.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2810..2927 | 321..437 | 172 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6792..6930 | 230..368 | 162 | 62.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1027..1167 | 298..436 | 159 | 59.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2371..2563 | 230..425 | 154 | 57 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1061..1151 | 268..361 | 139 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1614 | 311..421 | 136 | 59.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1085..1182 | 268..363 | 115 | 61.6 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7376..7455 | 263..346 | 112 | 65.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1582 | 313..341 | 109 | 86.2 | Plus |
BS01601.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:32 Download gff for
BS01601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hnf4-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:21:29 Download gff for
BS01601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9310-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:25:00 Download gff for
BS01601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hnf4-RA | 887..1747 | 16..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:01 Download gff for
BS01601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hnf4-RA | 640..1500 | 16..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:01 Download gff for
BS01601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8689302..8689625 | 553..876 | 98 | <- | Minus |
2L | 8689814..8690252 | 114..552 | 100 | <- | Minus |
2L | 8704361..8704458 | 16..113 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:25:00 Download gff for
BS01601.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8689302..8689625 | 553..876 | 98 | <- | Minus |
arm_2L | 8689814..8690252 | 114..552 | 100 | <- | Minus |
arm_2L | 8704361..8704458 | 16..113 | 100 | | Minus |
BS01601.complete Sequence
2149 bp (2149 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634654
> BS01601.complete
GAAGTTATCAGTCGACATGATGAAGCATCCGCAGGATCTGAGTGTCACGG
ATGACCAGCAGTTAATGAAGGTGAACAAGGTGGAGAAGATGGAGCAGGAG
TTGCACGACCCCGAATCGGAGAGCCACATAATGCACGCGGATGCCCTGGC
CTCTGCCTATCCGGCTGCCTCGCAGCCCCACAGTCCGATCGGCCTCGCCC
TCAGCCCCAATGGCGGTGGGCTGGGACTGAGCAACAGTAGCAACCAGAGC
AGCGAGAACTTTGCGCTCTGCAACGGAAACGGAAATGCGGGCAGCGCAGG
AGGCGGAAGTGCCAGCAGTGGCAGCAACAACAACAACAGCATGTTCTCAC
CCAACAACAACTTGAGCGGAAGCGGAAGTGGGACTAACAGCAGTCAGCAG
CAATTGCAGCAGCAACAACAACAGCAATCACCGACGGTCTGCGCCATTTG
TGGAGATCGGGCGACGGGCAAACATTATGGAGCCTCCAGCTGCGACGGCT
GCAAAGGATTCTTCAGGAGGAGTGTCAGGAAAAATCATCAGTACACTTGC
AGATTTGCGCGAAACTGCGTTGTGGACAAGGACAAACGGAATCAGTGCCG
CTACTGCCGGCTGAGGAAGTGCTTCAAGGCGGGCATGAAGAAGGAGGCGG
TGCAAAACGAGCGGGATCGCATTAGCTGCCGCCGCACCTCCAATGACGAC
CCGGATCCGGGCAATGGGCTGTCTGTGATTTCCTTGGTTAAGGCGGAGAA
TGAGTCGCGTCAGTCGAAGGCAGGCGCTGCCATGGAGCCAAACATTAACG
AGGACCTCTCCAACAAGCAGTTCGCGAGCATCAACGATGTCTGCGAGTCG
ATGAAGCAGCAGCTGCTGACCCTGGTGGAATGGGCTAAGCAGATTCCGGC
CTTTAACGAGCTGCAGCTGGATGACCAGGTGGCACTGCTACGCGCCCATG
CTGGCGAGCATTTGCTCCTCGGCCTGTCTCGTCGTTCGATGCACTTGAAG
GATGTTCTCCTGCTGAGCAACAATTGTGTGATCACAAGGCACTGTCCAGA
TCCCCTTGTGTCGCCGAATTTGGACATCTCCCGGATCGGCGCCCGTATCA
TCGATGAACTGGTGACGGTCATGAAGGATGTGGGTATCGATGACACTGAA
TTCGCTTGCATCAAGGCCCTAGTCTTCTTCGATCCCAATGCCAAGGGTCT
TAATGAACCGCATCGCATCAAATCGCTACGGCATCAGATACTCAATAATC
TCGAGGACTACATATCAGATCGGCAATACGAGTCGCGCGGTCGCTTTGGC
GAGATTCTGCTCATCCTGCCGGTTCTGCAGTCTATTACCTGGCAGATGAT
CGAGCAGATCCAGTTTGCCAAGATCTTTGGAGTGGCCCACATTGATTCAT
TACTGCAGGAAATGTTGTTGGGAGGAGAGTTGGCCGACAATCCTCTGCCG
CTATCGCCGCCCAATCAGTCAAATGACTACCAGAGTCCCACCCACACAGG
CAACATGGAGGGCGGTAATCAAGTTAACTCCTCTCTGGACTCGCTGGCCA
CGTCCGGTGGTCCTGGCTCGCATAGTCTGGACCTGGAGGTGCAGCACATT
CAGGCTCTTATCGAGGCGAACAGTGCGGATGATTCCTTCCGGGCCTACGC
GGCCAGCACTGCAGCGGCAGCCGCTGCAGCCGTCTCGTCCTCCTCCTCTG
CACCCGCATCCGTTGCTCCAGCCTCGATCTCTCCTCCGCTCAACAGCCCC
AAGTCACAACATCAACATCAGCAACATGCGACGCATCAGCAACAACAGGA
GAGCTCCTACTTGGACATGCCCGTCAAGCACTACAATGGCAGTCGGTCCG
GACCGCTGCCAACACAGCACAGTCCCCAGAGGATGCATCCCTACCAAAGA
GCAGTCGCCTCGCCGGTCGAAGTGTCCAGCGGGGGCGGCGGATTGGGTCT
GCGCAATCCTGCCGATATTACGCTCAACGAGTACAACCGGAGCGAGGGTA
GCAGTGCCGAGGAGCTGCTGCGACGAACTCCACTGAAGATCCGGGCTCCC
GAGATGCTAACCGCACCCGCTGGTTATGGAACGGAACCCTGTCGCATGAC
ACTTAAACAGGAGCCAGAGACTGGTTACTAGCGAAGCTTTCTAGACCAT
BS01601.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hnf4-RE | 2115 | CG9310-PE | 1..2115 | 17..2131 | 10575 | 100 | Plus |
Hnf4-RA | 2115 | CG9310-PA | 1..2115 | 17..2131 | 10575 | 100 | Plus |
Hnf4-RB | 2199 | CG9310-PB | 180..2199 | 112..2131 | 10100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:58:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hnf4-RE | 3876 | CG9310-RE | 1209..3324 | 16..2131 | 10580 | 100 | Plus |
Hnf4-RA | 3307 | CG9310-RA | 640..2755 | 16..2131 | 10580 | 100 | Plus |
Hnf4-RB | 2739 | CG9310-RB | 195..2214 | 112..2131 | 10100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:58:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8687889..8688550 | 2084..1423 | 3310 | 100 | Minus |
2L | 23513712 | 2L | 8689129..8689629 | 1049..549 | 2505 | 100 | Minus |
2L | 23513712 | 2L | 8689814..8690253 | 552..113 | 2200 | 100 | Minus |
2L | 23513712 | 2L | 8688620..8688857 | 1425..1188 | 1190 | 100 | Minus |
2L | 23513712 | 2L | 8688921..8689063 | 1187..1045 | 715 | 100 | Minus |
2L | 23513712 | 2L | 8704361..8704458 | 113..16 | 490 | 100 | Minus |
2L | 23513712 | 2L | 8687778..8687825 | 2131..2084 | 240 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 07:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6898 | 268..433 | 232 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2432 | 298..427 | 224 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2411 | 302..433 | 220 | 70.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6852 | 313..426 | 215 | 66.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6923 | 230..422 | 204 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2526 | 230..435 | 202 | 59.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2478 | 268..425 | 197 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2767..2962 | 230..426 | 185 | 59.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2810..2927 | 321..437 | 172 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6792..6930 | 230..368 | 162 | 62.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1027..1167 | 298..436 | 159 | 59.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2371..2563 | 230..425 | 154 | 57 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2456 | 1698..1842 | 153 | 61.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6802 | 1741..1801 | 140 | 74.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1061..1151 | 268..361 | 139 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1614 | 311..421 | 136 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6860 | 1741..1810 | 135 | 71.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2390 | 1741..1801 | 131 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6781 | 1741..1801 | 131 | 72.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6891 | 1654..1797 | 121 | 56.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6708..6802 | 1750..1842 | 118 | 61.1 | Plus |
BS01601.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:27 Download gff for
BS01601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hnf4-RA | 1..2115 | 17..2131 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:18 Download gff for
BS01601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hnf4-RA | 637..2751 | 17..2133 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:12 Download gff for
BS01601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hnf4-RA | 888..3002 | 17..2133 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:28 Download gff for
BS01601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hnf4-RA | 636..2754 | 16..2136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:09 Download gff for
BS01601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hnf4-RA | 641..2755 | 17..2133 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:09 Download gff for
BS01601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8687775..8687824 | 2085..2133 | 96 | <- | Minus |
2L | 8687889..8688548 | 1425..2084 | 100 | <- | Minus |
2L | 8688621..8688857 | 1188..1424 | 100 | <- | Minus |
2L | 8688921..8689058 | 1050..1187 | 100 | <- | Minus |
2L | 8689129..8689625 | 553..1049 | 100 | <- | Minus |
2L | 8689814..8690252 | 114..552 | 100 | <- | Minus |
2L | 8704361..8704457 | 17..113 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:12 Download gff for
BS01601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8687775..8687824 | 2085..2133 | 96 | <- | Minus |
arm_2L | 8687889..8688548 | 1425..2084 | 100 | <- | Minus |
arm_2L | 8688621..8688857 | 1188..1424 | 100 | <- | Minus |
arm_2L | 8688921..8689058 | 1050..1187 | 100 | <- | Minus |
arm_2L | 8689129..8689625 | 553..1049 | 100 | <- | Minus |
arm_2L | 8689814..8690252 | 114..552 | 100 | <- | Minus |
arm_2L | 8704361..8704457 | 17..113 | 100 | | Minus |
BS01601.pep Sequence
Translation from 16 to 2130
> BS01601.pep
MMKHPQDLSVTDDQQLMKVNKVEKMEQELHDPESESHIMHADALASAYPA
ASQPHSPIGLALSPNGGGLGLSNSSNQSSENFALCNGNGNAGSAGGGSAS
SGSNNNNSMFSPNNNLSGSGSGTNSSQQQLQQQQQQQSPTVCAICGDRAT
GKHYGASSCDGCKGFFRRSVRKNHQYTCRFARNCVVDKDKRNQCRYCRLR
KCFKAGMKKEAVQNERDRISCRRTSNDDPDPGNGLSVISLVKAENESRQS
KAGAAMEPNINEDLSNKQFASINDVCESMKQQLLTLVEWAKQIPAFNELQ
LDDQVALLRAHAGEHLLLGLSRRSMHLKDVLLLSNNCVITRHCPDPLVSP
NLDISRIGARIIDELVTVMKDVGIDDTEFACIKALVFFDPNAKGLNEPHR
IKSLRHQILNNLEDYISDRQYESRGRFGEILLILPVLQSITWQMIEQIQF
AKIFGVAHIDSLLQEMLLGGELADNPLPLSPPNQSNDYQSPTHTGNMEGG
NQVNSSLDSLATSGGPGSHSLDLEVQHIQALIEANSADDSFRAYAASTAA
AAAAAVSSSSSAPASVAPASISPPLNSPKSQHQHQQHATHQQQQESSYLD
MPVKHYNGSRSGPLPTQHSPQRMHPYQRAVASPVEVSSGGGGLGLRNPAD
ITLNEYNRSEGSSAEELLRRTPLKIRAPEMLTAPAGYGTEPCRMTLKQEP
ETGY*
BS01601.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hnf4-PE | 704 | CG9310-PE | 1..704 | 1..704 | 3662 | 100 | Plus |
Hnf4-PA | 704 | CG9310-PA | 1..704 | 1..704 | 3662 | 100 | Plus |
Hnf4-PD | 708 | CG9310-PD | 30..708 | 26..704 | 3503 | 99.4 | Plus |
Hnf4-PB | 732 | CG9310-PB | 61..732 | 33..704 | 3494 | 100 | Plus |
Hnf4-PF | 666 | CG9310-PF | 1..666 | 39..704 | 3464 | 100 | Plus |