Clone Sequence Records
BS01606.3prime Sequence
894 bp (848 high quality bases) assembled on 2005-11-30
> BS01606.3prime
ATGGTCTAGAAAGCTTCGTCATTTGGAGCCCAACCCGTTGGCCACCAAAG
CACCTGGAGTGGCGGCGGCCACAGCAGCAGCCGCGGCTCCACCGCCCCCT
CCACCCCCGCCTCCTCCTCCGCCACCGGATTGGCCTCCGCTTCCCGCTCC
CGTACCGACGGCTATTCCTGCACCAGGACCGCCGACCGGAGCACTGACCG
CTTCCCGGGCGCCTGCTGCAGCAGCCGCAGCAGCTGCCGCCGCCTGCAGG
TGGGCCGCTGAGTTGGGAGTGGGTGGTGAGCGGGTGGCCATCGCGTTGCG
CAGACTCAGGTTGCTGGCCGAGTGCAGGTGCTTGGCGCTCAGCTCACTGG
CCCGGGTGTTGCCACAAACCTGATGGTGACTATCCCAATCCCTGTACTGA
CACGAGGCGCTGCAATATCGGGCCATGTTGCAGCCGGAACAGGTCTCCGT
TGCCTTGCGCCCGCAGTTCCAGCACTGCTGCTGCAGATTGCTGCCATTCT
GTGCACTGGCCATTGACGGCGACTTGTTGTCCAGATCGCGTTCTCCGCTG
GAATGGCGGCTCATCTCCATGAAGAACTTCTCCATGCGCAGGCGTTCCTG
CGTCATGATCTCAGCAGCTCGAGTTTCAGCGGCCACCACTGCCCTCTGGA
TTTCAATGACAGCTTGGCGTTTCACCTGTGTCACTGCATCCTCCGCATTC
CGTTTGAACTCGGCGACCTTCTCCTCCGTCTGGCGTCGCAGCTCCGCCAT
GGCCGCGGGAGTTACCTCCTGGCCGCTGTTGGGATGCTGGGGCTCGATGC
CCCGCTGCTGGAGGATCGTGATGGCCCGCTTCGTCTTGTCCACCATGGCG
GAGATGCAGTTGAGCATGGGTGTGGATGTTCTTCCACTCCTCCT
BS01606.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3385-PA | 2232 | nvy-RA | 1382..2232 | 869..19 | 4255 | 100 | Minus |
| CG11172-PA | 4260 | NFAT-RA | 485..512 | 213..240 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:32:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nvy-RD | 3426 | CG3385-RD | 1753..2629 | 894..17 | 4365 | 99.9 | Minus |
| nvy-RC | 3104 | CG3385-RC | 1431..2307 | 894..17 | 4365 | 99.9 | Minus |
| nvy-RB | 3097 | CG3385-RB | 1424..2300 | 894..17 | 4365 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:32:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24289932..24290287 | 372..17 | 1780 | 100 | Minus |
| 2R | 25286936 | 2R | 24289132..24289353 | 894..672 | 1065 | 99.6 | Minus |
| 2R | 25286936 | 2R | 24289440..24289623 | 678..495 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 24289681..24289808 | 495..368 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 16:32:55 has no hits.
BS01606.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:39 Download gff for
BS01606.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3385-PA | 1358..2232 | 19..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:21:39 Download gff for
BS01606.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3385-PA | 1358..2232 | 19..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:26:46 Download gff for
BS01606.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RB | 1424..2304 | 11..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:52:36 Download gff for
BS01606.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RB | 1424..2304 | 11..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:52:36 Download gff for
BS01606.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24289132..24289349 | 676..894 | 99 | -> | Minus |
| 2R | 24289443..24289622 | 496..675 | 100 | -> | Minus |
| 2R | 24289681..24289806 | 370..495 | 100 | -> | Minus |
| 2R | 24289935..24290291 | 11..369 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:26:46 Download gff for
BS01606.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20177204..20177329 | 370..495 | 100 | -> | Minus |
| arm_2R | 20176655..20176872 | 676..894 | 99 | -> | Minus |
| arm_2R | 20176966..20177145 | 496..675 | 100 | -> | Minus |
| arm_2R | 20177458..20177814 | 11..369 | 99 | | Minus |
BS01606.5prime Sequence
808 bp (790 high quality bases) assembled on 2005-11-30
> BS01606.5prime
GAAGTTATCAGTCGACATGATGGCGCTCGACGGCAAGGCGATAATTAAGG
AGGAGATTACCGACAAGGACGCTTACGACGCAGCTGCGGCGGCGGCAGCG
GCGGTGGCAGCGGGAGCCGCTCTGGCGGTGGCCTCTGCTGCGGCCGTCCA
GGTGCCACCCGCGTCATCGTCCTCGGCGGGATCAGCGTCATCGGCAGCCG
CCGCGGCCACCAACAACACAACATCGGCGGCAGCCACAGCGGCGGCAATT
AGTCGTCGGCTTAAAGCCAGCAGCAGCGGCGGGGACAAGAGCTCCACCTC
ATCCTCGAGCAGCAAGGACAGCAGCCACACCTCCAGCAGCAGGAGCGAGA
GGGACAGGGAGAGGGAGCGAGAACGGGAGCGGGAACGCGACCGCCTGTGC
CGCACTCCGCCGGACTCTCCGCCGGACAGCTCGCGCAGCCTGGCCCCCCG
CTCGCCCCACTCCCCACTACAGTTGCACCAGCATCCGCAGCGCAACGCCA
GCGTTTCCCCGGTGGTCAATGGATCCTCCTCGGGTGGAGGAGGCGTGGGA
TCCTCCGGCACTTCGCCTACGCCCACACCGGGCAGTCAGCATGCCGCCTC
CTTGGCCGCAGCCGCCGCCGCCGCTGCAGCCGCCCACGTGGAGCAGGCGC
GACTGGTTTCCAAGATGCGCAAGTTCCTGGGCGCCCTGGTCCAATTCTCC
CAGGAACTGGGACAGCCGGAGGTGTGCGAAAGGGTGCGCGCCCTGGTGCT
GTCCCTCTGCAGCGGCAGCATCTCCGTGGAGGAGTTCCGGCTGGCCCTGC
AGGAGGCC
BS01606.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3385-PA | 2232 | nvy-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nvy-RD | 3426 | CG3385-RD | 396..1187 | 17..808 | 3960 | 100 | Plus |
| nvy-RA | 3426 | CG3385-RA | 396..1187 | 17..808 | 3960 | 100 | Plus |
| nvy-RC | 3104 | CG3385-RC | 76..865 | 19..808 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24288023..24288566 | 265..808 | 2720 | 100 | Plus |
| 2R | 25286936 | 2R | 24284827..24285074 | 19..266 | 1240 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 20:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 559..717 | 248..94 | 137 | 56.9 | Minus |
BS01606.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:40 Download gff for
BS01606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3385-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:21:41 Download gff for
BS01606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3385-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:53:12 Download gff for
BS01606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 386..1187 | 7..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:34 Download gff for
BS01606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 386..1187 | 7..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:34 Download gff for
BS01606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24284819..24285074 | 8..266 | 98 | -> | Plus |
| 2R | 24288025..24288566 | 267..808 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:53:12 Download gff for
BS01606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20172342..20172597 | 8..266 | 98 | -> | Plus |
| arm_2R | 20175548..20176089 | 267..808 | 100 | | Plus |
BS01606.complete Sequence
2266 bp (2266 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634656
> BS01606.complete
GAAGTTATCAGTCGACATGATGGCGCTCGACGGCAAGGCGATAATTAAGG
AGGAGATTACCGACAAGGACGCTTACGACGCAGCTGCGGCGGCGGCAGCG
GCGGTGGCAGCGGGAGCCGCTCTGGCGGTGGCCTCTGCTGCGGCCGTCCA
GGTGCCACCCGCGTCATCGTCCTCGGCGGGATCAGCGTCATCGGCAGCCG
CCGCGGCCACCAACAACACAACATCGGCGGCAGCCACAGCGGCGGCAATT
AGTCGTCGGCTTAAAGCCAGCAGCAGCGGCGGGGACAAGAGCTCCACCTC
ATCCTCGAGCAGCAAGGACAGCAGCCACACCTCCAGCAGCAGGAGCGAGA
GGGACAGGGAGAGGGAGCGAGAACGGGAGCGGGAACGCGACCGCCTGTGC
CGCACTCCGCCGGACTCTCCGCCGGACAGCTCGCGCAGCCTGGCCCCCCG
CTCGCCCCACTCCCCACTACAGTTGCACCAGCATCCGCAGCGCAACGCCA
GCGTTTCCCCGGTGGTCAATGGATCCTCCTCGGGTGGAGGAGGCGTGGGA
TCCTCCGGCACTTCGCCTACGCCCACACCGGGCAGTCAGCATGCCGCCTC
CTTGGCCGCAGCCGCCGCCGCCGCTGCAGCCGCCCACGTGGAGCAGGCGC
GACTGGTTTCCAAGATGCGCAAGTTCCTGGGCGCCCTGGTCCAATTCTCC
CAGGAACTGGGACAGCCGGAGGTGTGCGAAAGGGTGCGCGCCCTGGTGCT
GTCCCTCTGCAGCGGCAGCATCTCCGTGGAGGAGTTCCGGCTGGCCCTGC
AGGAGGCCATCAACCTGCCACTCCGGCCCTATGTGGTTCCGCTCCTCAAA
AACAGCATCGCTCTGGTGCAGCGGGAGATTCTGGCACTGGCCAGAGCCAC
CAACCAATCCGCCCTGCAGTACGTGACCAACAACGAGCAGGCGGTGATGG
AGTTCGCTCCCCACGGAGTGGCCAGTGCCGAGTTCGGGGACATATTCATT
CAGCTGGAGGCACCCACATCAAACGGCAGCAGTGCGGTCTTCAAGCGCCG
CTCCTCGGACTCCATGATGGAGCATGGCGGCCACAACGGCCTGCAGGAGT
GGAACGAATACATGGCCAGCGGCGGAGCGGGCTATCCTCCACCGCCCAGC
AAGCGCCTCACACTGCATCCCGCCCACTCGGTGGTGGCCTACGGGGAATA
CGGGGTATCGTCCGCGGAAGGACTGCCCTCGGCGGCGGCCTTCATGCAGC
GCGACGAACGGGATCTGCGGATGAGCGAGGCGCAGGCCAGGCACGCCGCT
CCTCCACAAAGGGCAGGAAACCCACAGCCCAATCCCAATGCAGCTGCTCC
TGGAGCTCCGGGAGCGGGTGGCGAGGAGGAGTGGAAGAACATCCACACCA
TGCTCAACTGCATCTCCGCCATGGTGGACAAGACGAAGCGGGCCATCACG
ATCCTCCAGCAGCGGGGCATCGAGCCCCAGCATCCCAACAGCGGCCAGGA
GGTAACTCCCGCGGCCATGGCGGAGCTGCGACGCCAGACGGAGGAGAAGG
TCGCCGAGTTCAAACGGAATGCGGAGGATGCAGTGACACAGGTGAAACGC
CAAGCTGTCATTGAAATCCAGAGGGCAGTGGTGGCCGCTGAAACTCGAGC
TGCTGAGATCATGACGCAGGAACGCCTGCGCATGGAGAAGTTCTTCATGG
AGATGAGCCGCCATTCCAGCGGAGAACGCGATCTGGACAACAAGTCGCCG
TCAATGGCCAGTGCACAGAATGGCAGCAATCTGCAGCAGCAGTGCTGGAA
CTGCGGGCGCAAGGCAACGGAGACCTGTTCCGGCTGCAACATGGCCCGAT
ATTGCAGCGCCTCGTGTCAGTACAGGGATTGGGATAGTCACCATCAGGTT
TGTGGCAACACCCGGGCCAGTGAGCTGAGCGCCAAGCACCTGCACTCGGC
CAGCAACCTGAGTCTGCGCAACGCGATGGCCACCCGCTCACCACCCACTC
CCAACTCAGCGGCCCACCTGCAGGCGGCGGCAGCTGCTGCGGCTGCTGCA
GCAGGCGCCCGGGAAGCGGTCAGTGCTCCGGTCGGCGGTCCTGGTGCAGG
AATAGCCGTCGGTACGGGAGCGGGAAGCGGAGGCCAATCCGGTGGCGGAG
GAGGAGGCGGGGGTGGAGGGGGCGGTGGAGCCGCGGCTGCTGCTGTGGCC
GCCGCCACTCCAGGTGCTTTGGTGGCCAACGGGTTGGGCTCCAAATGACG
AAGCTTTCTAGACCAT
BS01606.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nvy-RD | 2274 | CG3385-PD | 1..2234 | 17..2250 | 11170 | 100 | Plus |
| nvy-RA | 2232 | CG3385-PA | 1..2232 | 17..2248 | 11160 | 100 | Plus |
| nvy-RC | 2229 | CG3385-PC | 1..2229 | 20..2248 | 11145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nvy-RD | 3426 | CG3385-RD | 396..2629 | 17..2250 | 11170 | 100 | Plus |
| nvy-RA | 3426 | CG3385-RA | 396..2629 | 17..2250 | 11170 | 100 | Plus |
| nvy-RC | 3104 | CG3385-RC | 76..2307 | 19..2250 | 11160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24288023..24289353 | 265..1595 | 6655 | 100 | Plus |
| 2R | 25286936 | 2R | 24289932..24290287 | 1895..2250 | 1780 | 100 | Plus |
| 2R | 25286936 | 2R | 24284827..24285074 | 19..266 | 1240 | 100 | Plus |
| 2R | 25286936 | 2R | 24289440..24289623 | 1589..1772 | 920 | 100 | Plus |
| 2R | 25286936 | 2R | 24289681..24289808 | 1772..1899 | 640 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:55:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 559..717 | 248..94 | 137 | 56.9 | Minus |
BS01606.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:30 Download gff for
BS01606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 1..2232 | 17..2248 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:11 Download gff for
BS01606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 383..2630 | 7..2256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:23 Download gff for
BS01606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 396..2629 | 17..2250 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:30 Download gff for
BS01606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 383..2630 | 7..2256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:04 Download gff for
BS01606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nvy-RA | 396..2629 | 17..2250 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:04 Download gff for
BS01606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24284826..24285074 | 17..266 | 99 | -> | Plus |
| 2R | 24289443..24289622 | 1592..1771 | 100 | -> | Plus |
| 2R | 24289681..24289806 | 1772..1897 | 100 | -> | Plus |
| 2R | 24288025..24289349 | 267..1591 | 100 | -> | Plus |
| 2R | 24289935..24290287 | 1898..2250 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:23 Download gff for
BS01606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20172349..20172597 | 17..266 | 99 | -> | Plus |
| arm_2R | 20175548..20176872 | 267..1591 | 100 | -> | Plus |
| arm_2R | 20176966..20177145 | 1592..1771 | 100 | -> | Plus |
| arm_2R | 20177204..20177329 | 1772..1897 | 100 | -> | Plus |
| arm_2R | 20177458..20177810 | 1898..2250 | 100 | | Plus |
BS01606.pep Sequence
Translation from 16 to 2247
> BS01606.pep
MMALDGKAIIKEEITDKDAYDAAAAAAAAVAAGAALAVASAAAVQVPPAS
SSSAGSASSAAAAATNNTTSAAATAAAISRRLKASSSGGDKSSTSSSSSK
DSSHTSSSRSERDRERERERERERDRLCRTPPDSPPDSSRSLAPRSPHSP
LQLHQHPQRNASVSPVVNGSSSGGGGVGSSGTSPTPTPGSQHAASLAAAA
AAAAAAHVEQARLVSKMRKFLGALVQFSQELGQPEVCERVRALVLSLCSG
SISVEEFRLALQEAINLPLRPYVVPLLKNSIALVQREILALARATNQSAL
QYVTNNEQAVMEFAPHGVASAEFGDIFIQLEAPTSNGSSAVFKRRSSDSM
MEHGGHNGLQEWNEYMASGGAGYPPPPSKRLTLHPAHSVVAYGEYGVSSA
EGLPSAAAFMQRDERDLRMSEAQARHAAPPQRAGNPQPNPNAAAPGAPGA
GGEEEWKNIHTMLNCISAMVDKTKRAITILQQRGIEPQHPNSGQEVTPAA
MAELRRQTEEKVAEFKRNAEDAVTQVKRQAVIEIQRAVVAAETRAAEIMT
QERLRMEKFFMEMSRHSSGERDLDNKSPSMASAQNGSNLQQQCWNCGRKA
TETCSGCNMARYCSASCQYRDWDSHHQVCGNTRASELSAKHLHSASNLSL
RNAMATRSPPTPNSAAHLQAAAAAAAAAAGAREAVSAPVGGPGAGIAVGT
GAGSGGQSGGGGGGGGGGGGGAAAAAVAAATPGALVANGLGSK*
BS01606.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nvy-PD | 757 | CG3385-PD | 1..743 | 1..743 | 3748 | 100 | Plus |
| nvy-PA | 743 | CG3385-PA | 1..743 | 1..743 | 3748 | 100 | Plus |
| nvy-PC | 742 | CG3385-PC | 1..742 | 2..743 | 3743 | 100 | Plus |
| nvy-PB | 742 | CG3385-PB | 1..742 | 2..743 | 3743 | 100 | Plus |
| fru-PA | 516 | CG14307-PA | 196..434 | 22..205 | 182 | 31.7 | Plus |
