Clone Sequence Records
BS01607.3prime Sequence
783 bp (752 high quality bases) assembled on 2005-11-30
> BS01607.3prime
ATGGTCTAGAAAGCTTCGCTAACGCCTCATTATGTCCTCAATGCTGAACC
CTGTTCTTCTCGGTGGTGCAGGCGGTGGTGCTATGGGCGGTGCTGCCACT
GGTGGTCCCTTTTCGGTGGTGGCTCCACTTGTTTCCGTACTCGGTGGTTT
TCCCAGAAGCTGTCTGGGGGGATGTCGCGACATATTCAAAGCATATATGC
TGGGACTATCCACAAAGGTCCTTTGACCCAATCCAGGATGGTGGTGCGGA
TCCATCAAGTCCAAGGTCGGTGCCGGAAGAATCCTCTTTCGCATGGGTAT
CGATCCCAGGAAGCTGGGCATAGCTTCATGCGGTGAATGCAAAGGTTGAT
TGGGTGGTTTACCCGACTCCGGCTGGGTTATTATAGTGGGTGGTGTATGT
GGGTGGCGGTGGAACACCAGCCTTCGAAAGGTTCAAGCTCTTGTGGTGCA
AGTCGCGTCGAACGTGCAGAATGGGCAAATAGGGATCCCCGTTGGGTGGG
AGTAAGTGTGGATGTCCTGGGTGCTGGTGGGTTGGCGGAGGAGCTCCAGG
TGGTGCAGGCGGCGGTCCAGCTGCCCCAGGTGGTACAGAATATCGCACAA
AGGAAGGTGGAACGGGTAGGCTGGCAATGCCAGAGTTCCCGGGTTCCTCC
TGATGTTTCTCGCCATGTGGCCGCATTGTGTAGGTTTCACCACCCTCATG
ATGACAGTGGGTGACTCCCTGGCGTTCCGGCTTGGTGCCCACTGACGACG
ATGATTGCGATGTGGCGGCAGCCTTACTCGCCT
BS01607.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10021-PB | 2235 | bowl-RB | 1852..2235 | 402..19 | 1920 | 100 | Minus |
| CG10021-PC | 2235 | bowl-RC | 1852..2235 | 402..19 | 1920 | 100 | Minus |
| CG10021-PD | 2235 | bowl-RD | 1852..2235 | 402..19 | 1920 | 100 | Minus |
| CG10021-PA | 2235 | bowl-RA | 1852..2235 | 402..19 | 1920 | 100 | Minus |
| CG10021-PB | 2235 | bowl-RB | 1472..1853 | 783..402 | 1910 | 100 | Minus |
| CG10021-PC | 2235 | bowl-RC | 1472..1853 | 783..402 | 1910 | 100 | Minus |
| CG10021-PD | 2235 | bowl-RD | 1472..1853 | 783..402 | 1910 | 100 | Minus |
| CG10021-PA | 2235 | bowl-RA | 1472..1853 | 783..402 | 1910 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bowl-RH | 3435 | CG10021-RH | 1835..2598 | 783..19 | 3800 | 99.9 | Minus |
| bowl-RG | 3394 | CG10021-RG | 1794..2557 | 783..19 | 3800 | 99.9 | Minus |
| bowl-RF | 3507 | CG10021-RF | 1907..2670 | 783..19 | 3800 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3782521..3783284 | 783..19 | 3775 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:39:08 has no hits.
BS01607.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:41 Download gff for
BS01607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bowl-PA | 1472..2235 | 19..783 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:21:42 Download gff for
BS01607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10021-PD | 1472..2235 | 19..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:07:06 Download gff for
BS01607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bowl-RF | 1907..2673 | 14..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:17:53 Download gff for
BS01607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bowl-RF | 1907..2673 | 14..783 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:17:53 Download gff for
BS01607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3782521..3783287 | 14..783 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:07:06 Download gff for
BS01607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3782521..3783287 | 14..783 | 99 | | Minus |
BS01607.5prime Sequence
881 bp (845 high quality bases) assembled on 2005-11-30
> BS01607.5prime
GAAGTTATCAGTCGACATGCCCACGGAAAGCTCATCCAGCGAGATCTCCG
GCGGAGGAGGCGGTGCGATACCCATGCTGCGACCTTCCCGGATGGATCAG
TTCATGAACTCGATGGCGGCGGCAGCGGCGGCGGTGGGTGGTGGCGGTCT
TCCTGGTGCGGCGGATAGGAACGGCGGATCCGGAGGATCGGATGGTGGCT
CCCAGAATGGCAACGGCGATTCGCGCAACTCATCGGCCAGCCGGATCTCA
GCGTATGAAACACAGCTGGCCTATCAGCAGCATTTGGCCGGACTGCATGG
TCCGCCGCCACCGCCACCACCATCGCATCATCGCGAGATCTCTGCCTTTG
TGCCGGTTCTGCCCACCGGAAAGGTGCGCCCGGGTAGTAATTCCAATTAC
GAAATCATTGCCATGATGGCGGACAAGCGAAAGGAGTTGGCCCTAAGGGA
GGCGGCTGCGGCGGCGGCAATGTTAGGACGAGGTCCTGGAGGACCCGGCG
GTCCTGGTGTGCCACCGCCTGGAGTGTTGTACGGACCAGCTGGCGTGCCA
CCTCCGCCATATCTCACCGGACCGGGTCCATCGCCCACGGGAGCCGGAAG
TTTTCCATTTCCACCAGGAGCCGCCGCCGCAGCTCTATTTCCACCTGGCC
TGGGTCCTGGAATGCATGCCGGACTCGATAGGCGCCTGCTACGTGCTCCT
GGTCGGGCATCGCGGCCTAAAAAACAGTTCATCTGCAAGTTCTGCAATCG
ACAATTCACCAAGTCGTACAATCTGCTCATCCACGAGAGGACACACACGG
ACGAGCGGCCCTATTCCTGTGATATCTGCGGCAAGGCGTTCCGGCGACAG
GATCACCTGANGGATCACAGGTATATTCACT
BS01607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10021-PB | 2235 | bowl-RB | 1..865 | 17..881 | 4306 | 99.8 | Plus |
| CG10021-PC | 2235 | bowl-RC | 1..865 | 17..881 | 4306 | 99.8 | Plus |
| CG10021-PD | 2235 | bowl-RD | 1..865 | 17..881 | 4306 | 99.8 | Plus |
| CG10021-PA | 2235 | bowl-RA | 1..865 | 17..881 | 4306 | 99.8 | Plus |
| CG3851-PA | 1179 | odd-RA | 655..785 | 725..855 | 305 | 89.3 | Plus |
| CG3242-PA | 1737 | sob-RA | 1180..1322 | 725..867 | 246 | 86.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:03:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bowl-RH | 3435 | CG10021-RH | 364..1228 | 17..881 | 4314 | 99.9 | Plus |
| bowl-RG | 3394 | CG10021-RG | 323..1187 | 17..881 | 4314 | 99.9 | Plus |
| bowl-RF | 3507 | CG10021-RF | 436..1300 | 17..881 | 4314 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3779726..3780581 | 17..872 | 4269 | 99.9 | Plus |
| 2L | 23513712 | 2L | 3605362..3605530 | 881..713 | 489 | 85.8 | Minus |
| 2L | 23513712 | 2L | 3578852..3579013 | 873..712 | 454 | 85.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:03:40 has no hits.
BS01607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:11:42 Download gff for
BS01607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bowl-PD | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:21:43 Download gff for
BS01607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10021-PA | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:15:54 Download gff for
BS01607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bowl-RF | 429..1300 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:50 Download gff for
BS01607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bowl-RF | 429..1300 | 9..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:50 Download gff for
BS01607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3779719..3780586 | 9..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:15:54 Download gff for
BS01607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3779719..3780586 | 9..878 | 99 | | Plus |
BS01607.complete Sequence
2269 bp (2269 high quality bases) assembled on 2005-06-23
GenBank Submission: FJ634657
> BS01607.complete
GAAGTTATCAGTCGACATGCCCACGGAAAGCTCATCCAGCGAGATCTCCG
GCGGAGGAGGCGGTGCGATACCCATGCTGCGACCTTCCCGGATGGATCAG
TTCATGAACTCGATGGCGGCGGCAGCGGCGGCGGTGGGTGGTGGCGGTCT
TCCTGGTGCGGCGGATAGGAACGGCGGATCCGGAGGATCGGATGGTGGCT
CCCAGAATGGCAACGGCGATTCGCGCAACTCATCGGCCAGCCGGATCTCA
GCGTATGAAACACAGCTGGCCTATCAGCAGCATTTGGCCGGACTGCATGG
TCCGCCGCCACCGCCACCACCATCGCATCATCGCGAGATCTCTGCCTTTG
TGCCGGTTCTGCCCACCGGAAAGGTGCGCCCGGGTAGTAATTCCAATTAC
GAAATCATTGCCATGATGGCGGACAAGCGAAAGGAGTTGGCCCTAAGGGA
GGCGGCTGCGGCGGCGGCAATGTTAGGACGAGGTCCTGGAGGACCCGGCG
GTCCTGGTGTGCCACCGCCTGGAGTGTTGTACGGACCAGCTGGCGTGCCA
CCTCCGCCATATCTCACCGGACCGGGTCCATCGCCCACGGGAGCCGGAAG
TTTTCCATTTCCACCAGGAGCCGCCGCCGCAGCTCTATTTCCACCTGGCC
TGGGTCCTGGAATGCATGCCGGACTCGATAGGCGCCTGCTACGTGCTCCT
GGTCGGGCATCGCGGCCTAAAAAACAGTTCATCTGCAAGTTCTGCAATCG
ACAATTCACCAAGTCGTACAATCTGCTCATCCACGAGAGGACACACACGG
ACGAGCGGCCCTATTCCTGTGATATCTGCGGCAAGGCGTTCCGGCGACAG
GATCACCTGAGGGATCACAGGTATATTCACTCCAAGGAGAAACCCTTCAA
ATGCACGGAATGCGGCAAGGGATTCTGCCAATCGAGAACCTTGGCTGTCC
ACAAGATCCTGCACATGGAGGAATCACCCCACAAGTGCCCCGTCTGCAGT
CGATCATTCAATCAGCGCTCCAACCTGAAGACCCATCTGCTCACCCACAC
GGATCACAAGCCCTACGAGTGCTCTTCATGCGGCAAAGTTTTCCGCCGTA
ACTGCGATCTACGACGCCATGCCTTGACCCATGCAGTGGGTGAGGTCAAC
TCCGGGGACTATGTGGATGTGGGCGAAGAGGATGAGGCCAGAAATTTAAG
TGGCGACGAGGAGGATTCGTTGCTGGAAGTGGACTCGCCTCGCCAGTCGC
CAGTTCACAATTTGGGCGAGTCTGGAGGATCGGGTGAGAAATCTGAGTCC
GAAAGAATGAGACTCAAGCGCAAGGCAGCCATCGATCATGAGGAAAGCGA
AGAGGAGTTCGATGACTTCGACGAGGAAGAGGAACTGCAGGATCTGCCAA
GAGTACACGATTTGCCCAGGGAAGAGGACGACGACTTTGATCCCGAGGAC
GAGGAGCAGGCAGAAGTGGCACTAGTGGCGCGTTTCCAGGCGAGTAAGGC
TGCCGCCACATCGCAATCATCGTCGTCAGTGGGCACCAAGCCGGAACGCC
AGGGAGTCACCCACTGTCATCATGAGGGTGGTGAAACCTACACAATGCGG
CCACATGGCGAGAAACATCAGGAGGAACCCGGGAACTCTGGCATTGCCAG
CCTACCCGTTCCACCTTCCTTTGTGCGATATTCTGTACCACCTGGGGCAG
CTGGACCGCCGCCTGCACCACCTGGAGCTCCTCCGCCAACCCACCAGCAC
CCAGGACATCCACACTTACTCCCACCCAACGGGGATCCCTATTTGCCCAT
TCTGCACGTTCGACGCGACTTGCACCACAAGAGCTTGAACCTTTCGAAGG
CTGGTGTTCCACCGCCACCACATACACCACCCACTATAATAACCCAGCCG
GAGTCGGGTAAACCACCCAATCAACCTTTGCATTCACCGCATGAAGCTAT
GCCCAGCTTCCTGGGATCGATACCCATGCGAAAGAGGATTCTTCCGGCAC
CGACCTTGGACTTGATGGATCCGCACCACCATCCTGGATTGGGTCAAAGG
ACCTTTGTGGATAGTCCCAGCATATATGCTTTGAATATGTCGCGACATCC
CCCCAGACAGCTTCTGGGAAAACCACCGAGTACGGAAACAAGTGGAGCCA
CCACCGAAAAGGGACCACCAGTGGCAGCACCGCCCATAGCACCACCGCCT
GCACCACCGAGAAGAACAGGGTTCAGCATTGAGGACATAATGAGGCGTTA
GCGAAGCTTTCTAGACCAT
BS01607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bowl-RH | 2235 | CG10021-PH | 1..2235 | 17..2251 | 11175 | 100 | Plus |
| bowl-RG | 2235 | CG10021-PG | 1..2235 | 17..2251 | 11175 | 100 | Plus |
| bowl-RF | 2235 | CG10021-PF | 1..2235 | 17..2251 | 11175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bowl-RH | 3435 | CG10021-RH | 364..2598 | 17..2251 | 11175 | 100 | Plus |
| bowl-RG | 3394 | CG10021-RG | 323..2557 | 17..2251 | 11175 | 100 | Plus |
| bowl-RF | 3507 | CG10021-RF | 436..2670 | 17..2251 | 11175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3781901..3783284 | 868..2251 | 6920 | 100 | Plus |
| 2L | 23513712 | 2L | 3779726..3780581 | 17..872 | 4280 | 100 | Plus |
| 2L | 23513712 | 2L | 3605212..3605530 | 1031..713 | 695 | 81.2 | Minus |
| 2L | 23513712 | 2L | 3578472..3578711 | 1107..868 | 630 | 84.2 | Minus |
| 2L | 23513712 | 2L | 3578852..3579013 | 873..712 | 465 | 85.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:50:39 has no hits.
BS01607.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:34:31 Download gff for
BS01607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bowl-RD | 1..2235 | 17..2251 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:19:13 Download gff for
BS01607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bowl-RD | 552..2796 | 9..2256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:15 Download gff for
BS01607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bowl-RF | 436..2670 | 17..2253 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:34:31 Download gff for
BS01607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bowl-RD | 552..2796 | 9..2256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:16 Download gff for
BS01607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bowl-RF | 436..2670 | 17..2253 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:32:16 Download gff for
BS01607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3779726..3780579 | 17..870 | 100 | -> | Plus |
| 2L | 3781904..3783284 | 871..2253 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:15 Download gff for
BS01607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3779726..3780579 | 17..870 | 100 | -> | Plus |
| arm_2L | 3781904..3783284 | 871..2253 | 99 | | Plus |
BS01607.pep Sequence
Translation from 16 to 2250
> BS01607.pep
MPTESSSSEISGGGGGAIPMLRPSRMDQFMNSMAAAAAAVGGGGLPGAAD
RNGGSGGSDGGSQNGNGDSRNSSASRISAYETQLAYQQHLAGLHGPPPPP
PPSHHREISAFVPVLPTGKVRPGSNSNYEIIAMMADKRKELALREAAAAA
AMLGRGPGGPGGPGVPPPGVLYGPAGVPPPPYLTGPGPSPTGAGSFPFPP
GAAAAALFPPGLGPGMHAGLDRRLLRAPGRASRPKKQFICKFCNRQFTKS
YNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHRYIHSKEKPFKCTECG
KGFCQSRTLAVHKILHMEESPHKCPVCSRSFNQRSNLKTHLLTHTDHKPY
ECSSCGKVFRRNCDLRRHALTHAVGEVNSGDYVDVGEEDEARNLSGDEED
SLLEVDSPRQSPVHNLGESGGSGEKSESERMRLKRKAAIDHEESEEEFDD
FDEEEELQDLPRVHDLPREEDDDFDPEDEEQAEVALVARFQASKAAATSQ
SSSSVGTKPERQGVTHCHHEGGETYTMRPHGEKHQEEPGNSGIASLPVPP
SFVRYSVPPGAAGPPPAPPGAPPPTHQHPGHPHLLPPNGDPYLPILHVRR
DLHHKSLNLSKAGVPPPPHTPPTIITQPESGKPPNQPLHSPHEAMPSFLG
SIPMRKRILPAPTLDLMDPHHHPGLGQRTFVDSPSIYALNMSRHPPRQLL
GKPPSTETSGATTEKGPPVAAPPIAPPPAPPRRTGFSIEDIMRR*
BS01607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bowl-PH | 744 | CG10021-PH | 1..744 | 1..744 | 4042 | 100 | Plus |
| bowl-PG | 744 | CG10021-PG | 1..744 | 1..744 | 4042 | 100 | Plus |
| bowl-PF | 744 | CG10021-PF | 1..744 | 1..744 | 4042 | 100 | Plus |
| bowl-PA | 744 | CG10021-PA | 1..744 | 1..744 | 4042 | 100 | Plus |
| bowl-PD | 744 | CG10021-PD | 1..744 | 1..744 | 4042 | 100 | Plus |
